Strain Fitness in Pantoea sp. MT58 around IAI47_14920

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,148,003	+		IAI47_14915	0.32	-0.5
3,148,003	+		IAI47_14915	0.32	+0.6
3,148,003	+		IAI47_14915	0.32	+0.9
3,148,003	+		IAI47_14915	0.32	-0.6
3,148,004	-		IAI47_14915	0.32	+1.1
3,148,004	-		IAI47_14915	0.32	-1.1
3,148,004	-		IAI47_14915	0.32	-0.1
3,148,029	+		IAI47_14915	0.34	+0.6
3,148,030	-		IAI47_14915	0.34	+0.4
3,148,030	-		IAI47_14915	0.34	+0.2
3,148,056	+		IAI47_14915	0.36	+1.6
3,148,056	+		IAI47_14915	0.36	-0.1
3,148,056	+		IAI47_14915	0.36	+0.2
3,148,057	-		IAI47_14915	0.36	-1.7
3,148,057	-		IAI47_14915	0.36	+0.1
3,148,057	-		IAI47_14915	0.36	-0.9
3,148,057	-		IAI47_14915	0.36	-0.3
3,148,057	-		IAI47_14915	0.36	+1.1
3,148,069	-		IAI47_14915	0.37	+0.6
3,148,069	-		IAI47_14915	0.37	+0.9
3,148,076	-		IAI47_14915	0.37	+0.7
3,148,076	-		IAI47_14915	0.37	-0.1
3,148,076	-		IAI47_14915	0.37	+0.9
3,148,076	-		IAI47_14915	0.37	-1.0
3,148,098	-		IAI47_14915	0.39	+0.4
3,148,118	+		IAI47_14915	0.40	-0.4
3,148,118	+		IAI47_14915	0.40	+2.0
3,148,118	+		IAI47_14915	0.40	+0.2
3,148,118	+		IAI47_14915	0.40	+0.7
3,148,118	+		IAI47_14915	0.40	-0.4
3,148,118	+		IAI47_14915	0.40	+1.6
3,148,118	+		IAI47_14915	0.40	-0.9
3,148,118	+		IAI47_14915	0.40	+0.1
3,148,119	-		IAI47_14915	0.40	-1.7
3,148,139	+		IAI47_14915	0.42	-0.3
3,148,139	+		IAI47_14915	0.42	+1.6
3,148,139	+		IAI47_14915	0.42	+1.2
3,148,140	-		IAI47_14915	0.42	+0.3
3,148,140	-		IAI47_14915	0.42	+0.6
3,148,155	+		IAI47_14915	0.43	+0.1
3,148,160	-		IAI47_14915	0.43	+0.7
3,148,196	+		IAI47_14915	0.46	-0.1
3,148,196	+		IAI47_14915	0.46	-0.1
3,148,250	+		IAI47_14915	0.49	+0.4
3,148,250	+		IAI47_14915	0.49	-0.5
3,148,250	+		IAI47_14915	0.49	-0.7
3,148,250	+		IAI47_14915	0.49	+1.6
3,148,251	-		IAI47_14915	0.49	-0.6
3,148,251	-		IAI47_14915	0.49	-0.8
3,148,265	+		IAI47_14915	0.50	-0.1
3,148,266	-		IAI47_14915	0.51	-0.8
3,148,266	-		IAI47_14915	0.51	+0.7
3,148,308	-		IAI47_14915	0.54	+0.1
3,148,472	+		IAI47_14915	0.65	-0.1
3,148,473	-		IAI47_14915	0.65	-1.9
3,148,473	-		IAI47_14915	0.65	+0.5
3,148,499	+		IAI47_14915	0.67	-0.8
3,148,499	+		IAI47_14915	0.67	-0.1
3,148,499	+		IAI47_14915	0.67	-1.1
3,148,499	+		IAI47_14915	0.67	-1.3
3,148,500	-		IAI47_14915	0.67	+0.4
3,148,500	-		IAI47_14915	0.67	+0.5
3,148,500	-		IAI47_14915	0.67	+1.1
3,148,500	-		IAI47_14915	0.67	-1.1
3,148,500	-		IAI47_14915	0.67	+1.9
3,148,500	-		IAI47_14915	0.67	-0.2
3,148,500	-		IAI47_14915	0.67	-0.7
3,148,500	-		IAI47_14915	0.67	+0.2
3,148,500	-		IAI47_14915	0.67	-1.4
3,148,523	+		IAI47_14915	0.69	-2.1
3,148,523	+		IAI47_14915	0.69	-0.1
3,148,542	+		IAI47_14915	0.70	+0.7
3,148,542	+		IAI47_14915	0.70	+0.3
3,148,543	-		IAI47_14915	0.70	+1.6
3,148,543	-		IAI47_14915	0.70	+1.4
3,148,543	-		IAI47_14915	0.70	+0.3
3,148,547	+		IAI47_14915	0.70	+0.9
3,148,596	+		IAI47_14915	0.74	-0.1
3,148,596	+		IAI47_14915	0.74	+0.3
3,148,596	+		IAI47_14915	0.74	-1.9
3,148,596	+		IAI47_14915	0.74	-0.9
3,148,596	+		IAI47_14915	0.74	+0.8
3,148,597	-		IAI47_14915	0.74	-1.1
3,148,598	+		IAI47_14915	0.74	-1.1
3,148,598	+		IAI47_14915	0.74	-0.5
3,148,598	+		IAI47_14915	0.74	-1.4
3,148,598	+		IAI47_14915	0.74	+1.1
3,148,598	+		IAI47_14915	0.74	+0.7
3,148,598	+		IAI47_14915	0.74	+0.7
3,148,598	+		IAI47_14915	0.74	+0.6
3,148,598	+		IAI47_14915	0.74	-2.1
3,148,598	+		IAI47_14915	0.74	+0.7
3,148,598	+		IAI47_14915	0.74	-1.1
3,148,598	+		IAI47_14915	0.74	-0.4
3,148,599	-		IAI47_14915	0.74	+1.1
3,148,599	-		IAI47_14915	0.74	+1.6
3,148,599	-		IAI47_14915	0.74	-0.7
3,148,599	-		IAI47_14915	0.74	+0.2
3,148,599	-		IAI47_14915	0.74	-0.7
3,148,599	-		IAI47_14915	0.74	-0.0
3,148,599	-		IAI47_14915	0.74	+1.7
3,148,599	-		IAI47_14915	0.74	-1.3
3,148,599	-		IAI47_14915	0.74	+0.3
3,148,599	-		IAI47_14915	0.74	+0.5
3,148,599	-		IAI47_14915	0.74	+0.5
3,148,599	-		IAI47_14915	0.74	+0.1
3,148,599	-		IAI47_14915	0.74	+0.5
3,148,640	+		IAI47_14915	0.77	+0.6
3,148,640	+		IAI47_14915	0.77	-0.2
3,148,640	+		IAI47_14915	0.77	-0.1
3,148,640	+		IAI47_14915	0.77	-0.1
3,148,640	+		IAI47_14915	0.77	-2.1
3,148,640	+		IAI47_14915	0.77	+3.2
3,148,640	+		IAI47_14915	0.77	-0.3
3,148,641	-		IAI47_14915	0.77	+0.6
3,148,641	-		IAI47_14915	0.77	-0.9
3,148,656	+		IAI47_14915	0.78	-0.1
3,148,681	-		IAI47_14915	0.80	-0.3
3,148,706	+		IAI47_14915	0.82	-0.6
3,148,707	-		IAI47_14915	0.82	+1.3
3,148,707	-		IAI47_14915	0.82	-0.9
3,148,707	-		IAI47_14915	0.82	+1.1
3,148,707	-		IAI47_14915	0.82	-1.1
3,148,804	-		IAI47_14915	0.89	+3.2
3,148,813	+		IAI47_14915	0.89	+0.0
3,148,813	+		IAI47_14915	0.89	-0.7
3,148,814	-		IAI47_14915	0.89	-1.1
3,148,814	-		IAI47_14915	0.89	-0.9
3,148,814	-		IAI47_14915	0.89	-0.5
3,148,814	-		IAI47_14915	0.89	-1.1
3,148,814	-		IAI47_14915	0.89	-0.9
3,148,820	+		IAI47_14915	0.90	-1.1
3,148,821	-		IAI47_14915	0.90	+1.5
3,148,855	+				+1.5
3,148,856	-				+0.9
3,148,856	-				-0.8
3,148,856	-				-0.1
3,148,856	-				+0.6
3,148,889	-				-1.1
3,148,897	+				-0.1
3,148,897	+				+0.3
3,148,898	-				+1.9
3,148,917	-				-2.4
3,148,944	+				-1.4
3,148,944	+				-2.2
3,148,944	+				-0.7
3,148,944	+				+0.9
3,148,945	-				-0.3
3,148,945	-				+0.6
3,148,945	-				+0.4
3,148,945	-				+0.3
3,148,955	+				-0.9
3,148,962	+				+2.5
3,148,994	+				+0.0
3,149,001	+				+0.3
3,149,012	+				+0.6
3,149,024	+		IAI47_14920	0.10	+1.2
3,149,024	+		IAI47_14920	0.10	+1.5
3,149,024	+		IAI47_14920	0.10	+0.6
3,149,024	+		IAI47_14920	0.10	-1.3
3,149,024	+		IAI47_14920	0.10	-0.0
3,149,024	+		IAI47_14920	0.10	+1.5
3,149,025	-		IAI47_14920	0.11	-0.7
3,149,025	-		IAI47_14920	0.11	-2.1
3,149,025	-		IAI47_14920	0.11	-0.7
3,149,076	+		IAI47_14920	0.28	-0.9
3,149,076	+		IAI47_14920	0.28	+0.9
3,149,077	-		IAI47_14920	0.28	+0.5
3,149,077	-		IAI47_14920	0.28	+0.2
3,149,077	-		IAI47_14920	0.28	+0.1
3,149,133	+		IAI47_14920	0.47	+0.3
3,149,186	+		IAI47_14920	0.65	+0.6
3,149,186	+		IAI47_14920	0.65	+1.6
3,149,187	-		IAI47_14920	0.65	-0.9
3,149,187	-		IAI47_14920	0.65	-0.8
3,149,187	-		IAI47_14920	0.65	-0.3
3,149,247	+		IAI47_14920	0.86	-0.3
3,149,271	-				-1.0
3,149,271	-				-0.8
3,149,271	-				+0.5
3,149,277	+				+0.0
3,149,289	+				-1.4
3,149,289	+				+0.2
3,149,289	+				+0.7
3,149,289	+				-1.0
3,149,289	+				-0.3
3,149,290	-				-0.1
3,149,290	-				-0.6
3,149,292	+				-0.4
3,149,292	+				+0.6
3,149,292	+				+1.3
3,149,292	+				-0.4
3,149,292	+				+0.5
3,149,292	+				-0.0
3,149,292	+				-0.5
3,149,292	+				-0.3
3,149,292	+				+0.5
3,149,292	+				-0.1
3,149,293	-				-0.4
3,149,293	-				-0.7
3,149,293	-				+0.5
3,149,293	-				-0.6
3,149,293	-				-1.7
3,149,293	-				-1.5
3,149,293	-				-0.4
3,149,293	-				+0.4
3,149,293	-				+0.0
3,149,328	+				-1.0
3,149,328	+				-0.3
3,149,328	+				+0.0
3,149,328	+				+0.3
3,149,328	+				-0.5
3,149,329	-				+0.6
3,149,329	-				-0.7
3,149,329	-				-0.7
3,149,473	+				+0.3
3,149,490	+				+0.9
3,149,490	+				-0.3
3,149,491	-				-1.3
3,149,491	-				+0.9
3,149,491	-				+0.3
3,149,491	-				-0.0
3,149,491	-				+0.0
3,149,504	+				-0.4
3,149,504	+				-1.4
3,149,504	+				-3.1
3,149,532	+				-0.3
3,149,533	-				+0.2
3,149,567	-				+0.0
3,149,567	-				+0.9
3,149,567	-				+0.0
3,149,587	+		IAI47_14925	0.11	-1.0
3,149,597	+		IAI47_14925	0.17	-0.5
3,149,597	+		IAI47_14925	0.17	-0.1
3,149,598	-		IAI47_14925	0.17	-0.0
3,149,598	-		IAI47_14925	0.17	+1.2
3,149,638	-		IAI47_14925	0.38	+0.5
3,149,638	-		IAI47_14925	0.38	-0.7
3,149,638	-		IAI47_14925	0.38	-0.9
3,149,674	+		IAI47_14925	0.57	+0.1
3,149,674	+		IAI47_14925	0.57	-1.2
3,149,674	+		IAI47_14925	0.57	+0.9
3,149,675	-		IAI47_14925	0.57	-0.8
3,149,682	+		IAI47_14925	0.61	-0.9
3,149,682	+		IAI47_14925	0.61	+0.0
3,149,687	+		IAI47_14925	0.64	-0.1
3,149,687	+		IAI47_14925	0.64	-0.1
3,149,687	+		IAI47_14925	0.64	-0.9
3,149,687	+		IAI47_14925	0.64	+1.5
3,149,687	+		IAI47_14925	0.64	-1.4
3,149,688	-		IAI47_14925	0.64	+0.2
3,149,688	-		IAI47_14925	0.64	+0.4
3,149,688	-		IAI47_14925	0.64	+0.1
3,149,688	-		IAI47_14925	0.64	-1.9
3,149,688	-		IAI47_14925	0.64	-0.1
3,149,688	-		IAI47_14925	0.64	-1.4
3,149,688	-		IAI47_14925	0.64	-0.5
3,149,688	-		IAI47_14925	0.64	+1.1
3,149,688	-		IAI47_14925	0.64	+1.1
3,149,690	+		IAI47_14925	0.65	-1.4
3,149,690	+		IAI47_14925	0.65	+1.6
3,149,690	+		IAI47_14925	0.65	+0.9
3,149,691	-		IAI47_14925	0.66	+1.1
3,149,691	-		IAI47_14925	0.66	-2.8
3,149,691	-		IAI47_14925	0.66	+0.7
3,149,691	-		IAI47_14925	0.66	-0.8
3,149,751	-				+2.1
3,149,751	-				-0.0
3,149,751	-				+1.5
3,149,756	+				+2.5
3,149,756	+				+0.3
3,149,756	+				+1.2
3,149,756	+				-0.9
3,149,756	+				-0.7
3,149,756	+				-1.1
3,149,757	-				+0.5
3,149,757	-				-0.7
3,149,757	-				+0.3
3,149,757	-				+0.3
3,149,757	-				-0.8
3,149,810	+				-0.1
3,149,810	+				+0.1
3,149,810	+				+1.2
3,149,815	+				+0.5
3,149,815	+				-0.3
3,149,815	+				-0.1
3,149,815	+				+0.9
3,149,815	+				-0.0
3,149,815	+				-0.1
3,149,815	+				-0.8
3,149,815	+				+0.9
3,149,816	-				-2.3
3,149,816	-				+0.2
3,149,816	-				-0.8
3,149,816	-				+0.1
3,149,819	+				+1.4
3,149,819	+				+0.5
3,149,819	+				-0.1
3,149,820	-				+0.3
3,149,820	-				+0.1
3,149,820	-				+0.1
3,149,820	-				-0.4
3,149,820	-				-0.1
3,149,821	+				-0.0
3,149,821	+				+0.4
3,149,821	+				-1.9
3,149,822	-				+0.3
3,149,822	-				+0.0
3,149,822	-				-0.6
3,149,870	-				-1.0
3,149,870	-				-1.1
3,150,025	-		IAI47_14930	0.30	+0.1
3,150,123	-		IAI47_14930	0.49	+0.2
3,150,123	-		IAI47_14930	0.49	+0.1
3,150,123	-		IAI47_14930	0.49	+1.3
3,150,123	-		IAI47_14930	0.49	-0.1
3,150,123	-		IAI47_14930	0.49	+0.9
3,150,123	-		IAI47_14930	0.49	+3.2