Strain Fitness in Pantoea sp. MT58 around IAI47_14480

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,059,658	-				+0.5
3,059,658	-				+0.4
3,059,658	-				+0.8
3,059,658	-				-0.4
3,059,660	-				+0.9
3,059,660	-				-0.5
3,059,660	-				-0.6
3,059,660	-				-0.7
3,059,671	-				-1.3
3,059,671	-				+0.7
3,059,682	+				-1.4
3,059,682	+				+1.3
3,059,683	-				-0.6
3,059,704	+				+1.7
3,059,705	-				+4.0
3,059,705	-				+0.0
3,059,761	+				-0.7
3,059,761	+				-0.7
3,059,762	-				-0.4
3,059,762	-				-0.4
3,059,788	+				-1.4
3,059,788	+				-0.9
3,059,788	+				-0.1
3,059,789	-				-0.2
3,059,843	+		IAI47_14480	0.15	-0.8
3,059,846	+		IAI47_14480	0.16	-0.4
3,059,846	+		IAI47_14480	0.16	-0.3
3,059,846	+		IAI47_14480	0.16	+1.6
3,059,847	-		IAI47_14480	0.16	-2.9
3,060,001	+		IAI47_14480	0.44	-0.8
3,060,002	-		IAI47_14480	0.44	-0.8
3,060,013	+		IAI47_14480	0.46	+0.9
3,060,013	+		IAI47_14480	0.46	-0.4
3,060,013	+		IAI47_14480	0.46	+0.9
3,060,013	+		IAI47_14480	0.46	-2.4
3,060,013	+		IAI47_14480	0.46	-0.2
3,060,014	-		IAI47_14480	0.46	-0.2
3,060,014	-		IAI47_14480	0.46	-1.8
3,060,014	-		IAI47_14480	0.46	-0.6
3,060,014	-		IAI47_14480	0.46	-1.5
3,060,014	-		IAI47_14480	0.46	+0.5
3,060,014	-		IAI47_14480	0.46	-0.4
3,060,014	-		IAI47_14480	0.46	-0.4
3,060,025	+		IAI47_14480	0.48	-0.1
3,060,026	-		IAI47_14480	0.48	-2.6
3,060,026	-		IAI47_14480	0.48	+0.9
3,060,084	+		IAI47_14480	0.59	-2.3
3,060,084	+		IAI47_14480	0.59	+0.2
3,060,085	-		IAI47_14480	0.59	-0.5
3,060,137	+		IAI47_14480	0.68	+0.9
3,060,138	-		IAI47_14480	0.68	-0.3
3,060,138	-		IAI47_14480	0.68	-0.7
3,060,149	+		IAI47_14480	0.70	-0.7
3,060,149	+		IAI47_14480	0.70	+0.0
3,060,149	+		IAI47_14480	0.70	-0.8
3,060,149	+		IAI47_14480	0.70	+0.9
3,060,150	-		IAI47_14480	0.71	-0.1
3,060,150	-		IAI47_14480	0.71	-0.1
3,060,150	-		IAI47_14480	0.71	-0.1
3,060,150	-		IAI47_14480	0.71	-2.1
3,060,153	-		IAI47_14480	0.71	-0.2
3,060,153	-		IAI47_14480	0.71	-0.9
3,060,190	+		IAI47_14480	0.78	-0.5
3,060,190	+		IAI47_14480	0.78	+0.5
3,060,191	-		IAI47_14480	0.78	-0.1
3,060,191	-		IAI47_14480	0.78	+1.9
3,060,191	-		IAI47_14480	0.78	-1.1
3,060,245	+		IAI47_14480	0.88	-2.1
3,060,246	-		IAI47_14480	0.88	+0.3
3,060,246	-		IAI47_14480	0.88	+0.4
3,060,246	-		IAI47_14480	0.88	-0.5
3,060,266	+				-1.3
3,060,266	+				-2.1
3,060,266	+				+0.9
3,060,266	+				-1.1
3,060,266	+				-1.3
3,060,266	+				-1.8
3,060,267	-				-0.8
3,060,267	-				-1.1
3,060,267	-				-1.4
3,060,311	+				+0.0
3,060,311	+				-1.1
3,060,311	+				-0.6
3,060,312	-				-0.1
3,060,312	-				-0.8
3,060,317	+				+0.5
3,060,318	-				+0.1
3,060,318	-				+2.5
3,060,360	+				-2.3
3,060,363	+				-1.0
3,060,363	+				+0.9
3,060,363	+				-2.6
3,060,363	+				-0.3
3,060,363	+				-0.8
3,060,363	+				-1.7
3,060,364	-				-0.3
3,060,364	-				+0.1
3,060,370	+				-0.3
3,060,370	+				-2.1
3,060,370	+				-0.1
3,060,370	+				-1.4
3,060,371	-				-1.0
3,060,446	-				-0.8
3,060,457	+				+0.9
3,060,503	+		IAI47_14485	0.12	+0.1
3,060,504	-		IAI47_14485	0.12	+1.5
3,060,504	-		IAI47_14485	0.12	-1.1
3,060,512	+		IAI47_14485	0.14	-0.3
3,060,512	+		IAI47_14485	0.14	+0.5
3,060,512	+		IAI47_14485	0.14	-0.3
3,060,512	+		IAI47_14485	0.14	-0.6
3,060,512	+		IAI47_14485	0.14	-0.5
3,060,513	-		IAI47_14485	0.15	+1.0
3,060,513	-		IAI47_14485	0.15	-1.7
3,060,513	-		IAI47_14485	0.15	+0.3
3,060,513	-		IAI47_14485	0.15	-0.1
3,060,513	-		IAI47_14485	0.15	+1.4
3,060,590	+		IAI47_14485	0.34	+0.5
3,060,591	-		IAI47_14485	0.35	-1.0
3,060,604	-		IAI47_14485	0.38	+0.5
3,060,614	+		IAI47_14485	0.41	-0.1
3,060,614	+		IAI47_14485	0.41	-0.6
3,060,614	+		IAI47_14485	0.41	+0.7
3,060,615	-		IAI47_14485	0.41	+0.0
3,060,615	-		IAI47_14485	0.41	+1.5
3,060,615	-		IAI47_14485	0.41	+0.2
3,060,670	+		IAI47_14485	0.55	-0.3
3,060,671	-		IAI47_14485	0.55	+0.9
3,060,764	+		IAI47_14485	0.79	+1.5
3,060,764	+		IAI47_14485	0.79	+0.9
3,060,764	+		IAI47_14485	0.79	+1.4
3,060,764	+		IAI47_14485	0.79	+0.6
3,060,765	-		IAI47_14485	0.79	+0.0
3,060,765	-		IAI47_14485	0.79	-0.7
3,060,768	+		IAI47_14485	0.80	-1.3
3,060,768	+		IAI47_14485	0.80	-0.7
3,060,768	+		IAI47_14485	0.80	+0.7
3,060,768	+		IAI47_14485	0.80	+1.4
3,060,768	+		IAI47_14485	0.80	+0.5
3,060,769	-		IAI47_14485	0.80	+1.8
3,060,769	-		IAI47_14485	0.80	+1.5
3,060,771	+		IAI47_14485	0.81	-0.8
3,060,771	+		IAI47_14485	0.81	+0.7
3,060,772	-		IAI47_14485	0.81	+0.3
3,060,772	-		IAI47_14485	0.81	-0.1
3,060,772	-		IAI47_14485	0.81	+0.1
3,060,772	-		IAI47_14485	0.81	+0.9
3,060,777	+		IAI47_14485	0.82	-0.4
3,060,777	+		IAI47_14485	0.82	-0.7
3,060,778	-		IAI47_14485	0.83	+0.8
3,060,778	-		IAI47_14485	0.83	-0.7
3,060,780	+		IAI47_14485	0.83	+0.9
3,060,780	+		IAI47_14485	0.83	-0.6
3,060,780	+		IAI47_14485	0.83	-0.2
3,060,780	+		IAI47_14485	0.83	-0.4
3,060,780	+		IAI47_14485	0.83	-1.2
3,060,781	-		IAI47_14485	0.83	+1.4
3,060,781	-		IAI47_14485	0.83	+0.9
3,060,781	-		IAI47_14485	0.83	-0.7
3,060,781	-		IAI47_14485	0.83	+0.2
3,060,781	-		IAI47_14485	0.83	-1.1
3,060,781	-		IAI47_14485	0.83	-1.2
3,060,781	-		IAI47_14485	0.83	-0.1
3,060,781	-		IAI47_14485	0.83	+1.7
3,060,781	-		IAI47_14485	0.83	+0.1
3,060,781	-		IAI47_14485	0.83	-0.4
3,060,781	-		IAI47_14485	0.83	+0.2
3,060,825	+				-0.3
3,060,826	-				+0.1
3,060,826	-				-0.8
3,060,828	+				-1.0
3,060,828	+				+0.2
3,060,829	-				+1.6
3,060,829	-				-1.1
3,060,876	+				-0.4
3,060,876	+				-0.2
3,060,876	+				+1.1
3,060,877	-				+0.3
3,060,877	-				-0.2
3,060,881	+				+1.9
3,060,881	+				-2.1
3,060,882	-				+2.2
3,060,882	-				-0.3
3,060,992	+		IAI47_14490	0.17	-0.3
3,060,992	+		IAI47_14490	0.17	+0.7
3,060,993	-		IAI47_14490	0.17	-0.1
3,060,993	-		IAI47_14490	0.17	-0.3
3,061,047	+		IAI47_14490	0.27	+0.9
3,061,048	-		IAI47_14490	0.27	+0.4
3,061,048	-		IAI47_14490	0.27	+0.5
3,061,170	-		IAI47_14490	0.50	-0.2
3,061,227	+		IAI47_14490	0.61	+0.1
3,061,227	+		IAI47_14490	0.61	-0.3
3,061,228	-		IAI47_14490	0.61	-2.1
3,061,237	-		IAI47_14490	0.63	+0.9