Strain Fitness in Pantoea sp. MT58 around IAI47_13735

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
2,906,338	+				+0.4
2,906,338	+				-1.4
2,906,338	+				-1.0
2,906,338	+				+0.2
2,906,338	+				-0.1
2,906,338	+				+1.3
2,906,339	-				+0.3
2,906,346	+				+0.3
2,906,346	+				+0.1
2,906,346	+				+0.8
2,906,347	-				+0.3
2,906,347	-				-0.1
2,906,371	+				+0.3
2,906,371	+				+0.5
2,906,371	+				+0.1
2,906,371	+				+1.5
2,906,372	-				+0.3
2,906,372	-				+1.1
2,906,372	-				+0.5
2,906,392	+				-0.8
2,906,392	+				-1.1
2,906,392	+				+1.2
2,906,417	+				-1.3
2,906,417	+				-0.5
2,906,417	+				+1.9
2,906,417	+				-0.2
2,906,418	-				+1.3
2,906,418	-				-0.5
2,906,418	-				+1.0
2,906,418	-				-0.5
2,906,418	-				-0.1
2,906,418	-				+0.5
2,906,418	-				-0.7
2,906,438	+				-1.1
2,906,438	+				-1.0
2,906,439	-				-1.4
2,906,460	+				-0.1
2,906,613	+		IAI47_13730	0.20	-0.7
2,907,099	-		IAI47_13730	0.76	-1.1
2,908,153	+		IAI47_13735	0.72	-0.1
2,908,510	-				+1.9
2,908,659	-				-0.7
2,908,676	-		IAI47_13740	0.11	-0.7
2,909,052	-		IAI47_13740	0.41	-0.1
2,909,062	-		IAI47_13740	0.42	+0.9
2,909,209	-		IAI47_13740	0.54	-1.1