Strain Fitness in Pantoea sp. MT58 around IAI47_10365

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
2,194,867	+		IAI47_10360	0.29	+0.1
2,194,867	+		IAI47_10360	0.29	+0.8
2,194,867	+		IAI47_10360	0.29	-0.1
2,194,867	+		IAI47_10360	0.29	-0.4
2,194,867	+		IAI47_10360	0.29	+1.5
2,194,867	+		IAI47_10360	0.29	-0.0
2,194,867	+		IAI47_10360	0.29	+0.3
2,194,868	-		IAI47_10360	0.29	+2.2
2,194,874	+		IAI47_10360	0.30	-0.6
2,194,874	+		IAI47_10360	0.30	-0.5
2,194,875	-		IAI47_10360	0.30	+0.4
2,194,875	-		IAI47_10360	0.30	+0.7
2,194,875	-		IAI47_10360	0.30	-1.4
2,194,875	-		IAI47_10360	0.30	+0.8
2,194,875	-		IAI47_10360	0.30	+0.2
2,194,884	+		IAI47_10360	0.31	+0.0
2,194,884	+		IAI47_10360	0.31	+1.8
2,194,885	-		IAI47_10360	0.31	-1.1
2,194,896	+		IAI47_10360	0.32	-0.4
2,194,896	+		IAI47_10360	0.32	+0.4
2,194,896	+		IAI47_10360	0.32	+0.9
2,194,897	-		IAI47_10360	0.32	+0.5
2,194,897	-		IAI47_10360	0.32	-0.4
2,194,898	+		IAI47_10360	0.32	+0.8
2,194,899	-		IAI47_10360	0.32	-1.8
2,194,906	+		IAI47_10360	0.33	+0.2
2,194,973	+		IAI47_10360	0.38	+1.1
2,195,135	+		IAI47_10360	0.52	+1.0
2,195,136	-		IAI47_10360	0.52	-1.1
2,195,136	-		IAI47_10360	0.52	-0.5
2,195,141	+		IAI47_10360	0.53	+1.2
2,195,141	+		IAI47_10360	0.53	+0.8
2,195,142	-		IAI47_10360	0.53	-0.7
2,195,165	+		IAI47_10360	0.55	+0.8
2,195,165	+		IAI47_10360	0.55	-0.3
2,195,166	-		IAI47_10360	0.55	+0.2
2,195,166	-		IAI47_10360	0.55	-0.1
2,195,166	-		IAI47_10360	0.55	-0.2
2,195,207	+		IAI47_10360	0.58	+0.6
2,195,219	+		IAI47_10360	0.59	+1.0
2,195,219	+		IAI47_10360	0.59	+0.1
2,195,395	+		IAI47_10360	0.74	+0.4
2,195,395	+		IAI47_10360	0.74	+0.5
2,195,403	+		IAI47_10360	0.75	+1.2
2,195,403	+		IAI47_10360	0.75	+0.2
2,195,404	-		IAI47_10360	0.75	+0.8
2,195,404	-		IAI47_10360	0.75	+1.6
2,195,409	+		IAI47_10360	0.75	+0.4
2,195,462	+		IAI47_10360	0.80	+4.0
2,195,462	+		IAI47_10360	0.80	+2.2
2,195,462	+		IAI47_10360	0.80	-0.8
2,195,463	-		IAI47_10360	0.80	+0.8
2,195,463	-		IAI47_10360	0.80	+0.1
2,195,463	-		IAI47_10360	0.80	+0.1
2,195,487	+		IAI47_10360	0.82	+1.4
2,195,488	-		IAI47_10360	0.82	-0.4
2,195,504	+		IAI47_10360	0.84	+0.1
2,195,504	+		IAI47_10360	0.84	+0.6
2,195,505	-		IAI47_10360	0.84	-0.4
2,195,505	-		IAI47_10360	0.84	+0.7
2,195,505	-		IAI47_10360	0.84	-0.7
2,195,519	+		IAI47_10360	0.85	-0.2
2,195,570	+		IAI47_10360	0.89	+0.5
2,195,570	+		IAI47_10360	0.89	+1.4
2,195,586	+				-0.1
2,195,618	+				+1.1
2,195,619	-				+0.1
2,195,619	-				-0.8
2,195,619	-				-0.1
2,195,619	-				+1.0
2,195,636	+				+1.6
2,195,637	-				+0.4
2,195,637	-				-0.7
2,195,666	+				+1.5
2,195,666	+				+0.9
2,195,667	-				-0.2
2,195,677	+				+1.3
2,195,677	+				+1.5
2,195,678	-				-0.7
2,195,731	-				+0.5
2,195,737	-				-0.7
2,195,737	-				+0.6
2,195,737	-				-0.4
2,195,740	+				+0.8
2,195,740	+				+1.9
2,195,740	+				+1.8
2,195,740	+				+0.9
2,195,740	+				+1.8
2,195,740	+				+1.9
2,195,740	+				+2.2
2,195,740	+				+2.0
2,195,741	-				+1.1
2,195,741	-				+1.0
2,195,741	-				-0.3
2,195,741	-				-0.2
2,195,741	-				-0.6
2,195,741	-				-1.1
2,195,741	-				-0.8
2,195,741	-				+0.4
2,195,741	-				-1.8
2,195,771	+				+0.5
2,195,772	-				-1.1
2,195,772	-				+0.8
2,195,772	-				-0.1
2,195,772	-				-1.8
2,195,794	-				-0.5
2,195,794	-				-0.1
2,195,800	-				-1.5
2,195,801	+				+1.9
2,195,801	+				+0.4
2,195,801	+				-0.1
2,195,801	+				+0.0
2,195,802	-				+0.0
2,195,802	-				-0.8
2,195,802	-				+1.5
2,195,869	+				-0.1
2,195,919	+				+0.0
2,195,920	-				-1.1
2,195,933	-				-0.5
2,195,939	-				-2.5
2,196,119	+		IAI47_10365	0.28	-0.5
2,196,119	+		IAI47_10365	0.28	+1.4
2,196,120	-		IAI47_10365	0.28	-0.2
2,196,146	+		IAI47_10365	0.31	+1.0
2,196,147	-		IAI47_10365	0.31	-0.4
2,196,147	-		IAI47_10365	0.31	-1.8
2,196,147	-		IAI47_10365	0.31	+0.6
2,196,147	-		IAI47_10365	0.31	+0.2
2,196,148	+		IAI47_10365	0.31	-0.0
2,196,148	+		IAI47_10365	0.31	-0.1
2,196,148	+		IAI47_10365	0.31	-0.2
2,196,148	+		IAI47_10365	0.31	+1.6
2,196,148	+		IAI47_10365	0.31	+0.6
2,196,148	+		IAI47_10365	0.31	-0.8
2,196,148	+		IAI47_10365	0.31	-0.5
2,196,149	-		IAI47_10365	0.31	+0.0
2,196,149	-		IAI47_10365	0.31	-0.9
2,196,208	-		IAI47_10365	0.37	-0.9
2,196,253	+		IAI47_10365	0.41	-2.3
2,196,254	-		IAI47_10365	0.42	-0.1
2,196,254	-		IAI47_10365	0.42	-1.2
2,196,256	+		IAI47_10365	0.42	-3.2
2,196,256	+		IAI47_10365	0.42	-0.8
2,196,256	+		IAI47_10365	0.42	-0.8
2,196,256	+		IAI47_10365	0.42	-2.5
2,196,257	-		IAI47_10365	0.42	-2.0
2,196,257	-		IAI47_10365	0.42	-1.5
2,196,266	-		IAI47_10365	0.43	-1.7
2,196,266	-		IAI47_10365	0.43	-3.1
2,196,426	+		IAI47_10365	0.59	-1.0
2,196,426	+		IAI47_10365	0.59	-1.9
2,196,426	+		IAI47_10365	0.59	-0.4
2,196,426	+		IAI47_10365	0.59	-0.9
2,196,426	+		IAI47_10365	0.59	+2.2
2,196,427	-		IAI47_10365	0.59	-0.7
2,196,427	-		IAI47_10365	0.59	+0.6
2,196,427	-		IAI47_10365	0.59	-0.2
2,196,427	-		IAI47_10365	0.59	-0.4
2,196,427	-		IAI47_10365	0.59	-0.4
2,196,493	+		IAI47_10365	0.66	-0.2
2,196,493	+		IAI47_10365	0.66	+0.2
2,196,493	+		IAI47_10365	0.66	-2.2
2,196,494	-		IAI47_10365	0.66	+1.0
2,196,494	-		IAI47_10365	0.66	-0.0
2,196,494	-		IAI47_10365	0.66	-0.0
2,196,494	-		IAI47_10365	0.66	-0.8
2,196,494	-		IAI47_10365	0.66	-2.9
2,196,494	-		IAI47_10365	0.66	+0.1
2,196,494	-		IAI47_10365	0.66	-3.7
2,196,494	-		IAI47_10365	0.66	-1.3
2,196,494	-		IAI47_10365	0.66	-0.8
2,196,562	+		IAI47_10365	0.72	-0.1
2,196,587	-		IAI47_10365	0.75	-1.3
2,196,833	+				-0.3
2,196,833	+				+1.2
2,196,834	-				-1.0
2,196,846	+				-1.2
2,196,926	+				+0.6
2,196,926	+				+1.5
2,196,927	-				+0.0
2,196,927	-				-1.0
2,197,074	+				-0.2
2,197,075	-				+0.7
2,197,075	-				-0.9
2,197,075	-				+0.8
2,197,117	+				+1.4
2,197,117	+				-0.7
2,197,118	-				+0.1
2,197,118	-				-0.2
2,197,118	-				+0.5
2,197,118	-				+1.8
2,197,126	-				-0.2
2,197,126	-				-0.8
2,197,270	+		IAI47_10370	0.13	+0.6
2,197,270	+		IAI47_10370	0.13	+0.8
2,197,271	-		IAI47_10370	0.13	+0.0
2,197,271	-		IAI47_10370	0.13	+1.1
2,197,271	-		IAI47_10370	0.13	-0.8
2,197,271	-		IAI47_10370	0.13	-0.2
2,197,271	-		IAI47_10370	0.13	+0.5
2,197,273	+		IAI47_10370	0.14	+0.8
2,197,274	-		IAI47_10370	0.14	+0.1
2,197,282	+		IAI47_10370	0.14	-0.7
2,197,282	+		IAI47_10370	0.14	+0.8
2,197,283	-		IAI47_10370	0.15	+0.5
2,197,283	-		IAI47_10370	0.15	-0.2
2,197,308	-		IAI47_10370	0.17	-1.0
2,197,335	+		IAI47_10370	0.19	+0.1
2,197,336	-		IAI47_10370	0.20	-1.5
2,197,429	+		IAI47_10370	0.28	-0.2
2,197,429	+		IAI47_10370	0.28	-0.5
2,197,429	+		IAI47_10370	0.28	-1.5
2,197,429	+		IAI47_10370	0.28	-1.0
2,197,429	+		IAI47_10370	0.28	-0.2
2,197,430	-		IAI47_10370	0.29	+0.1
2,197,430	-		IAI47_10370	0.29	+1.5
2,197,430	-		IAI47_10370	0.29	-0.5
2,197,430	-		IAI47_10370	0.29	+0.2
2,197,430	-		IAI47_10370	0.29	+0.8
2,197,463	+		IAI47_10370	0.32	+0.3
2,197,463	+		IAI47_10370	0.32	-0.6
2,197,463	+		IAI47_10370	0.32	-0.1
2,197,463	+		IAI47_10370	0.32	-0.7
2,197,463	+		IAI47_10370	0.32	-0.2
2,197,464	-		IAI47_10370	0.32	+0.4
2,197,464	-		IAI47_10370	0.32	-0.8
2,197,525	+		IAI47_10370	0.38	+1.2
2,197,526	-		IAI47_10370	0.38	-1.1
2,197,546	+		IAI47_10370	0.40	+0.3
2,197,546	+		IAI47_10370	0.40	+1.8
2,197,592	+		IAI47_10370	0.44	+0.5
2,197,592	+		IAI47_10370	0.44	+1.9
2,197,593	-		IAI47_10370	0.44	+1.2
2,197,593	-		IAI47_10370	0.44	-0.7
2,197,593	-		IAI47_10370	0.44	+0.1
2,197,595	+		IAI47_10370	0.44	-0.4
2,197,655	-		IAI47_10370	0.50	+1.7
2,197,655	-		IAI47_10370	0.50	-1.5
2,197,698	-		IAI47_10370	0.54	-2.4
2,197,738	+		IAI47_10370	0.58	+0.1
2,197,739	-		IAI47_10370	0.58	+0.4