Strain Fitness in Pantoea sp. MT58 around IAI47_06750

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,406,666	+		IAI47_06745	0.45	+0.4
1,406,666	+		IAI47_06745	0.45	+0.9
1,406,666	+		IAI47_06745	0.45	+0.3
1,406,666	+		IAI47_06745	0.45	+0.3
1,406,666	+		IAI47_06745	0.45	+1.1
1,406,667	-		IAI47_06745	0.45	+0.4
1,406,669	+		IAI47_06745	0.45	-0.8
1,406,669	+		IAI47_06745	0.45	-0.6
1,406,669	+		IAI47_06745	0.45	-0.4
1,406,669	+		IAI47_06745	0.45	+0.5
1,406,669	+		IAI47_06745	0.45	-2.3
1,406,670	-		IAI47_06745	0.45	+0.1
1,406,670	-		IAI47_06745	0.45	-0.5
1,406,777	+		IAI47_06745	0.56	-0.5
1,406,777	+		IAI47_06745	0.56	+0.4
1,406,777	+		IAI47_06745	0.56	+1.1
1,406,778	-		IAI47_06745	0.56	+0.1
1,406,778	-		IAI47_06745	0.56	-0.6
1,406,778	-		IAI47_06745	0.56	-0.1
1,406,778	-		IAI47_06745	0.56	+0.9
1,406,778	-		IAI47_06745	0.56	-0.5
1,406,915	+		IAI47_06745	0.69	-0.7
1,406,915	+		IAI47_06745	0.69	-1.5
1,406,915	+		IAI47_06745	0.69	-1.5
1,406,915	+		IAI47_06745	0.69	+1.5
1,406,915	+		IAI47_06745	0.69	-0.7
1,406,915	+		IAI47_06745	0.69	+1.0
1,406,916	-		IAI47_06745	0.70	+0.4
1,406,916	-		IAI47_06745	0.70	+0.3
1,406,931	+		IAI47_06745	0.71	+1.0
1,406,931	+		IAI47_06745	0.71	-0.5
1,406,932	-		IAI47_06745	0.71	+1.2
1,406,932	-		IAI47_06745	0.71	+0.3
1,406,932	-		IAI47_06745	0.71	+1.6
1,406,932	-		IAI47_06745	0.71	+0.3
1,406,936	+		IAI47_06745	0.72	-1.3
1,406,936	+		IAI47_06745	0.72	+0.1
1,406,936	+		IAI47_06745	0.72	-0.3
1,406,937	-		IAI47_06745	0.72	+1.1
1,406,937	-		IAI47_06745	0.72	-0.4
1,406,968	+		IAI47_06745	0.75	+0.3
1,406,968	+		IAI47_06745	0.75	-0.1
1,406,998	+		IAI47_06745	0.78	+0.6
1,406,998	+		IAI47_06745	0.78	-1.0
1,406,998	+		IAI47_06745	0.78	+1.6
1,406,999	-		IAI47_06745	0.78	+0.2
1,406,999	-		IAI47_06745	0.78	+0.0
1,406,999	-		IAI47_06745	0.78	-0.1
1,406,999	-		IAI47_06745	0.78	+0.9
1,406,999	-		IAI47_06745	0.78	-0.3
1,407,002	+		IAI47_06745	0.78	-1.5
1,407,002	+		IAI47_06745	0.78	+0.4
1,407,002	+		IAI47_06745	0.78	-0.1
1,407,002	+		IAI47_06745	0.78	+0.2
1,407,002	+		IAI47_06745	0.78	+0.0
1,407,002	+		IAI47_06745	0.78	+1.3
1,407,003	-		IAI47_06745	0.78	+0.3
1,407,003	-		IAI47_06745	0.78	+1.1
1,407,003	-		IAI47_06745	0.78	-0.7
1,407,003	-		IAI47_06745	0.78	-0.7
1,407,003	-		IAI47_06745	0.78	-0.1
1,407,069	+		IAI47_06745	0.85	-0.1
1,407,069	+		IAI47_06745	0.85	-0.3
1,407,090	+		IAI47_06745	0.87	+0.9
1,407,090	+		IAI47_06745	0.87	+0.2
1,407,090	+		IAI47_06745	0.87	+0.6
1,407,091	-		IAI47_06745	0.87	+1.1
1,407,091	-		IAI47_06745	0.87	-0.1
1,407,091	-		IAI47_06745	0.87	-1.6
1,407,113	+		IAI47_06745	0.89	-0.2
1,407,113	+		IAI47_06745	0.89	+0.9
1,407,113	+		IAI47_06745	0.89	+0.0
1,407,114	-		IAI47_06745	0.89	-0.5
1,407,114	-		IAI47_06745	0.89	+1.1
1,407,125	+				+0.3
1,407,125	+				-1.2
1,407,125	+				+0.3
1,407,125	+				+0.1
1,407,125	+				-1.0
1,407,125	+				-0.5
1,407,125	+				+0.2
1,407,126	-				-0.0
1,407,126	-				+2.1
1,407,126	-				-0.4
1,407,127	+				-1.7
1,407,152	+				-0.5
1,407,153	-				+0.4
1,407,153	-				+0.5
1,407,153	-				-0.7
1,407,160	+				+0.6
1,407,161	-				+1.2
1,407,175	+				+1.5
1,407,175	+				+0.9
1,407,175	+				-0.6
1,407,175	+				+0.2
1,407,175	+				+1.3
1,407,175	+				+0.4
1,407,176	-				+0.1
1,407,176	-				-2.1
1,407,176	-				+1.3
1,407,176	-				+0.2
1,407,176	-				+0.5
1,407,206	+				+0.1
1,407,207	-				+0.3
1,407,215	-				-0.2
1,407,215	-				-0.9
1,407,221	+				-0.5
1,407,221	+				+2.1
1,407,221	+				+0.9
1,407,222	-				-0.8
1,407,222	-				+0.0
1,407,222	-				-2.1
1,407,293	+				+0.6
1,407,293	+				+0.9
1,407,374	+				+1.7
1,407,374	+				-0.5
1,407,374	+				-0.2
1,407,374	+				+0.3
1,407,374	+				-0.0
1,407,375	-				-0.1
1,407,375	-				+0.3
1,407,375	-				+0.3
1,407,396	+				-0.2
1,407,396	+				-1.5
1,407,396	+				+1.3
1,407,560	-				+0.1
1,407,560	-				+0.3
1,407,560	-				+0.9
1,407,591	+				+0.9
1,407,591	+				-0.6
1,407,592	-				+1.2
1,407,592	-				+0.6
1,407,592	-				-0.5
1,407,592	-				-0.4
1,407,592	-				+0.7
1,407,620	+				+0.2
1,407,620	+				-1.0
1,407,620	+				-1.7
1,407,621	-				-1.3
1,407,643	+				-0.5
1,407,643	+				+0.0
1,407,721	+				+1.2
1,407,721	+				+0.1
1,407,722	-				+0.5
1,407,751	-		IAI47_06750	0.12	+0.1
1,407,761	+		IAI47_06750	0.13	-0.4
1,407,762	-		IAI47_06750	0.13	+0.9
1,407,765	+		IAI47_06750	0.14	-0.7
1,407,766	-		IAI47_06750	0.14	-0.0
1,407,766	-		IAI47_06750	0.14	-0.7
1,407,777	+		IAI47_06750	0.15	-0.1
1,407,777	+		IAI47_06750	0.15	-0.4
1,407,778	-		IAI47_06750	0.16	-0.9
1,407,778	-		IAI47_06750	0.16	-1.8
1,407,886	+		IAI47_06750	0.31	+0.9
1,407,886	+		IAI47_06750	0.31	-2.1
1,407,887	-		IAI47_06750	0.31	+0.5
1,407,887	-		IAI47_06750	0.31	+0.1
1,407,903	-		IAI47_06750	0.33	-0.7
1,407,912	+		IAI47_06750	0.34	-1.0
1,407,913	-		IAI47_06750	0.34	+0.6
1,407,921	-		IAI47_06750	0.35	-0.2
1,407,921	-		IAI47_06750	0.35	-0.1
1,407,956	+		IAI47_06750	0.40	-0.0
1,407,956	+		IAI47_06750	0.40	+0.2
1,407,957	-		IAI47_06750	0.40	+1.5
1,407,959	+		IAI47_06750	0.41	+0.1
1,407,960	-		IAI47_06750	0.41	-1.6
1,407,960	-		IAI47_06750	0.41	-1.5
1,407,960	-		IAI47_06750	0.41	+0.5
1,407,974	+		IAI47_06750	0.43	-0.3
1,407,974	+		IAI47_06750	0.43	+0.1
1,407,975	-		IAI47_06750	0.43	+0.9
1,407,986	+		IAI47_06750	0.44	-0.1
1,407,986	+		IAI47_06750	0.44	+0.5
1,407,986	+		IAI47_06750	0.44	-1.5
1,407,987	-		IAI47_06750	0.45	-0.4
1,407,987	-		IAI47_06750	0.45	-0.6
1,408,027	+		IAI47_06750	0.50	-0.4
1,408,097	+		IAI47_06750	0.60	+0.9
1,408,097	+		IAI47_06750	0.60	-0.5
1,408,097	+		IAI47_06750	0.60	-1.6
1,408,097	+		IAI47_06750	0.60	+0.2
1,408,098	-		IAI47_06750	0.60	-0.7
1,408,098	-		IAI47_06750	0.60	-2.6
1,408,098	-		IAI47_06750	0.60	+0.5
1,408,098	-		IAI47_06750	0.60	-0.1
1,408,100	-		IAI47_06750	0.60	+0.1
1,408,100	-		IAI47_06750	0.60	-0.7
1,408,135	+		IAI47_06750	0.65	-1.1
1,408,135	+		IAI47_06750	0.65	+2.9
1,408,136	-		IAI47_06750	0.65	+0.5
1,408,136	-		IAI47_06750	0.65	-0.8
1,408,157	-		IAI47_06750	0.68	+0.9
1,408,157	-		IAI47_06750	0.68	-0.4
1,408,189	+		IAI47_06750	0.73	+0.1
1,408,189	+		IAI47_06750	0.73	-0.5
1,408,189	+		IAI47_06750	0.73	-0.3
1,408,189	+		IAI47_06750	0.73	-0.1
1,408,189	+		IAI47_06750	0.73	+1.3
1,408,189	+		IAI47_06750	0.73	-1.5
1,408,189	+		IAI47_06750	0.73	+0.2
1,408,189	+		IAI47_06750	0.73	-0.7
1,408,190	-		IAI47_06750	0.73	-0.0
1,408,190	-		IAI47_06750	0.73	-0.6
1,408,190	-		IAI47_06750	0.73	-1.0
1,408,190	-		IAI47_06750	0.73	-0.5
1,408,190	-		IAI47_06750	0.73	+0.9
1,408,190	-		IAI47_06750	0.73	-1.0
1,408,190	-		IAI47_06750	0.73	+0.9
1,408,190	-		IAI47_06750	0.73	-0.9
1,408,193	-		IAI47_06750	0.73	+1.8
1,408,193	-		IAI47_06750	0.73	-0.5
1,408,193	-		IAI47_06750	0.73	+1.2
1,408,216	+		IAI47_06750	0.76	-0.4
1,408,219	+		IAI47_06750	0.77	-0.4
1,408,219	+		IAI47_06750	0.77	+0.2
1,408,219	+		IAI47_06750	0.77	-1.9
1,408,220	-		IAI47_06750	0.77	+0.1
1,408,220	-		IAI47_06750	0.77	-2.0
1,408,283	+		IAI47_06750	0.86	-0.5
1,408,283	+		IAI47_06750	0.86	-0.4
1,408,283	+		IAI47_06750	0.86	-1.7
1,408,344	+				-0.7
1,408,344	+				-1.5
1,408,344	+				-0.5
1,408,345	-				-0.9
1,408,345	-				-0.5
1,408,429	+				-0.8
1,408,429	+				-0.3
1,408,429	+				-1.1
1,408,430	-				+0.9
1,408,430	-				-0.7
1,408,430	-				-1.1
1,408,430	-				-1.3
1,408,457	-				+1.3
1,408,457	-				+0.7
1,408,523	-				+1.6
1,408,523	-				-1.3
1,408,532	+				-0.5
1,408,549	+				+0.5
1,408,549	+				-0.9
1,408,637	+				+1.3
1,408,676	+				+0.3
1,408,676	+				+0.4
1,408,677	-				-0.4
1,408,677	-				-0.5
1,408,766	+		IAI47_06755	0.14	+0.9
1,408,767	-		IAI47_06755	0.14	-0.1
1,408,823	+		IAI47_06755	0.18	+1.5
1,408,824	-		IAI47_06755	0.18	+0.9
1,408,824	-		IAI47_06755	0.18	-1.5
1,408,824	-		IAI47_06755	0.18	+0.9
1,408,825	+		IAI47_06755	0.18	-1.5
1,408,825	+		IAI47_06755	0.18	-1.4
1,408,825	+		IAI47_06755	0.18	+0.9
1,408,825	+		IAI47_06755	0.18	+0.9
1,408,825	+		IAI47_06755	0.18	+0.4
1,408,825	+		IAI47_06755	0.18	-0.2
1,408,825	+		IAI47_06755	0.18	-0.6
1,408,825	+		IAI47_06755	0.18	+0.9
1,408,826	-		IAI47_06755	0.18	-1.0
1,408,826	-		IAI47_06755	0.18	-0.0
1,408,826	-		IAI47_06755	0.18	-0.3
1,408,826	-		IAI47_06755	0.18	-0.5
1,408,826	-		IAI47_06755	0.18	+0.1
1,408,853	-		IAI47_06755	0.20	-0.5
1,408,859	+		IAI47_06755	0.20	+0.9
1,408,859	+		IAI47_06755	0.20	-0.5
1,408,859	+		IAI47_06755	0.20	-1.1
1,408,860	-		IAI47_06755	0.20	-1.1
1,408,860	-		IAI47_06755	0.20	-0.7
1,408,931	+		IAI47_06755	0.24	-1.5
1,408,994	+		IAI47_06755	0.28	-0.5
1,408,994	+		IAI47_06755	0.28	+0.3
1,408,994	+		IAI47_06755	0.28	+1.5
1,408,995	-		IAI47_06755	0.28	+0.5
1,408,995	-		IAI47_06755	0.28	+0.9
1,409,085	+		IAI47_06755	0.33	-1.9
1,409,086	-		IAI47_06755	0.33	-0.7
1,409,189	+		IAI47_06755	0.39	+0.8
1,409,189	+		IAI47_06755	0.39	-0.7
1,409,190	-		IAI47_06755	0.39	-0.4
1,409,190	-		IAI47_06755	0.39	+0.1
1,409,190	-		IAI47_06755	0.39	+0.5
1,409,190	-		IAI47_06755	0.39	+0.0
1,409,190	-		IAI47_06755	0.39	-0.3
1,409,190	-		IAI47_06755	0.39	-0.5
1,409,224	-		IAI47_06755	0.41	+0.9