Strain Fitness in Pantoea sp. MT58 around IAI47_05435

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,149,409	+				-0.5
1,149,511	+				-0.1
1,149,512	-				+0.4
1,149,512	-				+1.4
1,149,529	-				+1.3
1,149,535	-				+0.5
1,149,542	-				+0.3
1,149,565	+				+1.4
1,149,566	-				+0.9
1,149,592	+				-0.5
1,149,592	+				-1.9
1,149,592	+				-0.0
1,149,593	-				+0.9
1,149,593	-				-1.2
1,149,597	+				+0.3
1,149,608	+				-0.1
1,149,691	+				-0.4
1,149,691	+				-1.1
1,149,692	-				+1.3
1,149,692	-				-0.5
1,149,923	+				-0.3
1,149,924	-				-2.1
1,149,930	-				-1.3
1,149,950	+				+0.7
1,149,951	-				-2.3
1,149,965	-				+0.4
1,149,965	-				-0.7
1,149,987	+				+1.9
1,149,988	-				+0.2
1,149,988	-				-0.7
1,149,988	-				+0.9
1,150,022	+				+0.9
1,150,023	-				-0.7
1,150,035	-				-0.1
1,150,036	+				+0.6
1,150,036	+				-1.1
1,150,036	+				-0.2
1,150,036	+				-0.8
1,150,037	-				-0.3
1,150,037	-				-1.3
1,150,037	-				+0.9
1,150,037	-				-0.0
1,150,037	-				+0.1
1,150,037	-				+0.3
1,150,037	-				-0.7
1,150,037	-				-2.5
1,150,074	+				+0.3
1,150,117	+		IAI47_05435	0.23	+0.3
1,150,117	+		IAI47_05435	0.23	-0.6
1,150,118	-		IAI47_05435	0.24	-0.0
1,150,122	-		IAI47_05435	0.25	-1.0
1,150,122	-		IAI47_05435	0.25	+0.4
1,150,122	-		IAI47_05435	0.25	+1.1
1,150,122	-		IAI47_05435	0.25	-0.4
1,150,122	-		IAI47_05435	0.25	+0.9
1,150,152	+		IAI47_05435	0.35	+2.4
1,150,153	-		IAI47_05435	0.35	+0.7
1,150,206	+		IAI47_05435	0.52	-0.3
1,150,207	-		IAI47_05435	0.52	+0.1
1,150,323	+		IAI47_05435	0.89	+0.5
1,150,324	-		IAI47_05435	0.89	+0.9
1,150,337	-				-0.4
1,150,387	+				-0.1
1,150,421	+				-0.7
1,150,421	+				-1.9
1,150,421	+				-3.0
1,150,421	+				-3.1
1,150,421	+				-1.1
1,150,421	+				-1.5
1,150,518	-		IAI47_05440	0.19	-2.6
1,150,523	+		IAI47_05440	0.19	-2.3
1,150,523	+		IAI47_05440	0.19	-0.7
1,150,523	+		IAI47_05440	0.19	-1.1
1,150,523	+		IAI47_05440	0.19	-1.5
1,150,524	-		IAI47_05440	0.20	-2.6
1,150,524	-		IAI47_05440	0.20	-3.0
1,150,524	-		IAI47_05440	0.20	-4.5
1,150,563	+		IAI47_05440	0.24	-2.3
1,150,602	-		IAI47_05440	0.28	-1.7
1,150,602	-		IAI47_05440	0.28	-2.1
1,150,616	+		IAI47_05440	0.29	-2.1
1,150,708	-		IAI47_05440	0.38	-1.8
1,150,739	+		IAI47_05440	0.42	-2.6
1,150,739	+		IAI47_05440	0.42	-2.7
1,150,739	+		IAI47_05440	0.42	-0.7
1,150,739	+		IAI47_05440	0.42	-2.1
1,150,739	+		IAI47_05440	0.42	-2.6
1,150,740	-		IAI47_05440	0.42	-3.1
1,150,740	-		IAI47_05440	0.42	-2.7
1,150,741	+		IAI47_05440	0.42	-1.9
1,150,742	-		IAI47_05440	0.42	-1.5
1,150,742	-		IAI47_05440	0.42	-4.3
1,150,742	-		IAI47_05440	0.42	-1.5
1,150,742	-		IAI47_05440	0.42	-3.5
1,150,742	-		IAI47_05440	0.42	-1.1
1,150,742	-		IAI47_05440	0.42	-2.9
1,150,742	-		IAI47_05440	0.42	-1.7
1,150,763	+		IAI47_05440	0.44	-1.5
1,150,787	+		IAI47_05440	0.47	-3.3
1,150,892	-		IAI47_05440	0.57	-2.6
1,150,892	-		IAI47_05440	0.57	-2.3
1,150,892	-		IAI47_05440	0.57	-3.3
1,150,892	-		IAI47_05440	0.57	-1.7
1,150,952	+		IAI47_05440	0.64	-3.8
1,150,953	-		IAI47_05440	0.64	-3.5
1,150,953	-		IAI47_05440	0.64	-1.1
1,150,953	-		IAI47_05440	0.64	-3.8
1,150,976	+		IAI47_05440	0.66	-1.9
1,150,976	+		IAI47_05440	0.66	-1.9
1,150,977	-		IAI47_05440	0.66	-1.3
1,151,000	+		IAI47_05440	0.69	-0.7
1,151,001	-		IAI47_05440	0.69	-1.1
1,151,040	+		IAI47_05440	0.73	-3.5
1,151,041	-		IAI47_05440	0.73	-1.9
1,151,068	+		IAI47_05440	0.76	-1.1
1,151,068	+		IAI47_05440	0.76	-0.7
1,151,068	+		IAI47_05440	0.76	-2.5
1,151,068	+		IAI47_05440	0.76	-1.1
1,151,068	+		IAI47_05440	0.76	-2.5
1,151,068	+		IAI47_05440	0.76	-2.1
1,151,069	-		IAI47_05440	0.76	-2.6
1,151,069	-		IAI47_05440	0.76	-4.1
1,151,069	-		IAI47_05440	0.76	-1.5
1,151,069	-		IAI47_05440	0.76	-1.9
1,151,069	-		IAI47_05440	0.76	-1.9
1,151,132	+		IAI47_05440	0.82	-1.5
1,151,133	-		IAI47_05440	0.82	-3.7
1,151,159	+		IAI47_05440	0.85	-1.9
1,151,159	+		IAI47_05440	0.85	-0.7
1,151,160	-		IAI47_05440	0.85	-2.1
1,151,160	-		IAI47_05440	0.85	-1.1
1,151,160	-		IAI47_05440	0.85	-2.8
1,151,160	-		IAI47_05440	0.85	-2.1
1,151,181	+		IAI47_05440	0.87	-4.3
1,151,181	+		IAI47_05440	0.87	-1.5
1,151,261	+				-0.7
1,151,261	+				-1.7
1,151,261	+				-1.9
1,151,261	+				-1.1
1,151,262	-				-3.2
1,151,262	-				-0.7
1,151,262	-				-2.8
1,151,262	-				-3.7
1,151,262	-				-4.3
1,151,290	+				-3.2
1,151,290	+				-3.0
1,151,290	+				-1.9
1,151,290	+				-3.1
1,151,290	+				-1.5
1,151,291	-				-0.7
1,151,291	-				-2.3
1,151,291	-				-1.7
1,151,291	-				-2.8
1,151,297	+				-1.9
1,151,297	+				-1.1
1,151,297	+				-0.7
1,151,297	+				-0.1
1,151,297	+				-1.8
1,151,297	+				-0.1
1,151,297	+				-0.7
1,151,298	-				-3.7
1,151,298	-				-2.1
1,151,298	-				-3.3
1,151,303	+				-1.5
1,151,303	+				+0.1
1,151,303	+				-2.3
1,151,304	-				-3.4
1,151,314	+				-1.1
1,151,314	+				-1.7
1,151,314	+				-2.7
1,151,315	-				-0.1
1,151,315	-				+0.9
1,151,315	-				+1.9
1,151,327	+				-3.0
1,151,340	-				-0.5
1,151,347	+				-3.2
1,151,347	+				-1.5
1,151,347	+				-3.1
1,151,347	+				-1.6
1,151,347	+				-0.1
1,151,347	+				-2.4
1,151,347	+				-0.9
1,151,347	+				-2.3
1,151,347	+				-1.7
1,151,347	+				-1.5
1,151,348	-				-1.9
1,151,348	-				-3.4
1,151,348	-				-3.3
1,151,348	-				-1.7
1,151,348	-				-2.0
1,151,348	-				-1.4
1,151,348	-				-2.4
1,151,348	-				-0.5
1,151,348	-				-0.2
1,151,348	-				-0.0
1,151,348	-				-2.4
1,151,348	-				-2.9