Strain Fitness in Pantoea sp. MT58 around IAI47_05420

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,146,272	+		IAI47_05415	0.31	+0.9
1,146,272	+		IAI47_05415	0.31	-1.6
1,146,272	+		IAI47_05415	0.31	+0.0
1,146,272	+		IAI47_05415	0.31	+0.9
1,146,273	-		IAI47_05415	0.31	-1.0
1,146,273	-		IAI47_05415	0.31	-1.0
1,146,380	+		IAI47_05415	0.39	+1.6
1,146,380	+		IAI47_05415	0.39	+1.6
1,146,427	+		IAI47_05415	0.43	-0.8
1,146,427	+		IAI47_05415	0.43	-0.0
1,146,427	+		IAI47_05415	0.43	-0.1
1,146,427	+		IAI47_05415	0.43	-0.6
1,146,427	+		IAI47_05415	0.43	+0.9
1,146,427	+		IAI47_05415	0.43	+1.2
1,146,427	+		IAI47_05415	0.43	-2.0
1,146,428	-		IAI47_05415	0.43	-1.8
1,146,428	-		IAI47_05415	0.43	-0.2
1,146,428	-		IAI47_05415	0.43	-0.6
1,146,544	+		IAI47_05415	0.51	-0.6
1,146,545	-		IAI47_05415	0.51	+2.4
1,146,545	-		IAI47_05415	0.51	+1.2
1,146,545	-		IAI47_05415	0.51	-2.1
1,146,545	-		IAI47_05415	0.51	-0.7
1,146,554	+		IAI47_05415	0.52	-0.8
1,146,554	+		IAI47_05415	0.52	+0.1
1,146,555	-		IAI47_05415	0.52	-1.6
1,146,555	-		IAI47_05415	0.52	-0.3
1,146,631	+		IAI47_05415	0.58	+0.1
1,146,631	+		IAI47_05415	0.58	+0.4
1,146,631	+		IAI47_05415	0.58	+0.4
1,146,632	-		IAI47_05415	0.58	+0.5
1,146,741	+		IAI47_05415	0.66	-0.8
1,146,741	+		IAI47_05415	0.66	-0.7
1,146,741	+		IAI47_05415	0.66	+0.2
1,146,742	-		IAI47_05415	0.66	+0.9
1,146,742	-		IAI47_05415	0.66	-0.1
1,146,742	-		IAI47_05415	0.66	+0.8
1,146,742	-		IAI47_05415	0.66	-0.1
1,146,760	+		IAI47_05415	0.67	+0.6
1,146,776	+		IAI47_05415	0.69	+0.4
1,146,776	+		IAI47_05415	0.69	+0.1
1,146,776	+		IAI47_05415	0.69	+0.3
1,146,777	-		IAI47_05415	0.69	+0.9
1,146,777	-		IAI47_05415	0.69	+0.4
1,146,790	-		IAI47_05415	0.70	-1.1
1,146,846	+		IAI47_05415	0.74	-1.3
1,146,847	-		IAI47_05415	0.74	+0.5
1,146,847	-		IAI47_05415	0.74	-0.1
1,146,847	-		IAI47_05415	0.74	-0.0
1,146,847	-		IAI47_05415	0.74	-0.2
1,146,898	+		IAI47_05415	0.78	+0.9
1,146,898	+		IAI47_05415	0.78	-2.1
1,146,898	+		IAI47_05415	0.78	+0.6
1,146,898	+		IAI47_05415	0.78	+0.5
1,146,899	-		IAI47_05415	0.78	-0.7
1,146,899	-		IAI47_05415	0.78	-1.1
1,146,899	-		IAI47_05415	0.78	-0.9
1,146,899	-		IAI47_05415	0.78	-0.5
1,146,902	+		IAI47_05415	0.78	-0.9
1,146,902	+		IAI47_05415	0.78	-1.7
1,146,902	+		IAI47_05415	0.78	-0.3
1,146,902	+		IAI47_05415	0.78	+0.4
1,146,902	+		IAI47_05415	0.78	-1.5
1,146,902	+		IAI47_05415	0.78	+1.1
1,146,903	-		IAI47_05415	0.78	-0.5
1,147,067	+				-0.4
1,147,068	-				+0.1
1,147,068	-				-2.3
1,147,068	-				+0.4
1,147,074	+				-0.3
1,147,108	+				+0.2
1,147,108	+				-0.1
1,147,108	+				+0.9
1,147,108	+				-0.1
1,147,109	-				-0.1
1,147,204	+				+0.5
1,147,204	+				+0.8
1,147,204	+				-1.8
1,147,204	+				+0.1
1,147,204	+				-0.7
1,147,205	-				-0.4
1,147,205	-				-0.2
1,147,205	-				+0.6
1,147,240	+				+0.4
1,147,241	-				+0.1
1,147,241	-				-1.5
1,147,241	-				+0.4
1,147,245	+				+0.4
1,147,245	+				+0.3
1,147,246	-				+0.2
1,147,246	-				+0.7
1,147,255	+				+1.4
1,147,255	+				+2.4
1,147,256	-				-0.4
1,147,256	-				+0.4
1,147,256	-				+0.9
1,147,259	+				-0.3
1,147,259	+				-0.0
1,147,259	+				-0.5
1,147,260	-				-0.8
1,147,478	-		IAI47_05420	0.44	-1.1
1,147,612	-		IAI47_05420	0.71	-0.7
1,147,697	-		IAI47_05420	0.88	-1.5
1,147,769	+				-0.7
1,147,770	-				-0.7
1,147,770	-				+0.5
1,147,777	-				+1.2
1,147,777	-				+0.5
1,147,803	-				+0.9
1,147,821	+				+0.9
1,147,825	-				+3.4
1,147,825	-				-0.1
1,147,835	-				+0.2
1,147,912	-				-1.5
1,147,914	+				-0.8
1,147,984	+		IAI47_05425	0.11	-1.5
1,147,990	+		IAI47_05425	0.11	-0.5
1,147,990	+		IAI47_05425	0.11	-0.1
1,147,996	-		IAI47_05425	0.11	-0.7
1,148,041	-		IAI47_05425	0.14	+0.9
1,148,078	-		IAI47_05425	0.16	+2.1
1,148,083	-		IAI47_05425	0.16	+1.4
1,148,109	-		IAI47_05425	0.18	+0.5
1,148,131	-		IAI47_05425	0.19	+2.4
1,148,151	+		IAI47_05425	0.20	+0.9
1,148,151	+		IAI47_05425	0.20	+0.3
1,148,152	-		IAI47_05425	0.20	+1.9
1,148,154	-		IAI47_05425	0.20	+1.6
1,148,154	-		IAI47_05425	0.20	-1.1
1,148,179	-		IAI47_05425	0.22	+0.3
1,148,277	+		IAI47_05425	0.28	+0.1
1,148,277	+		IAI47_05425	0.28	+1.2
1,148,332	+		IAI47_05425	0.31	-0.7
1,148,451	+		IAI47_05425	0.38	-0.1
1,148,498	+		IAI47_05425	0.40	-0.6
1,148,499	-		IAI47_05425	0.40	+0.6
1,148,499	-		IAI47_05425	0.40	+2.4
1,148,532	+		IAI47_05425	0.42	-0.1