Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04135 and IAI47_04140 are separated by 149 nucleotides IAI47_04140 and IAI47_04145 are separated by 94 nucleotides IAI47_04145 and IAI47_04150 are separated by 298 nucleotides
IAI47_04135: IAI47_04135 - phosphopyruvate hydratase, at 869,057 to 870,352
_04135
IAI47_04140: IAI47_04140 - 7-carboxy-7-deazaguanine synthase QueE, at 870,502 to 871,173
_04140
IAI47_04145: IAI47_04145 - 6-carboxytetrahydropterin synthase QueD, at 871,268 to 871,627
_04145
IAI47_04150: IAI47_04150 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 871,926 to 873,731
_04150
Position (kb) 871
872 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 870.310 kb on + strand at 870.339 kb on + strand at 870.340 kb on + strand at 870.340 kb on + strand at 870.351 kb on - strand at 870.351 kb on - strand at 870.351 kb on - strand at 870.389 kb on + strand at 870.390 kb on - strand at 870.390 kb on - strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.550 kb on + strand at 870.550 kb on + strand at 870.551 kb on - strand at 870.551 kb on - strand at 870.551 kb on - strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.584 kb on + strand, within IAI47_04140 at 870.584 kb on + strand, within IAI47_04140 at 870.584 kb on + strand, within IAI47_04140 at 870.585 kb on - strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.669 kb on + strand, within IAI47_04140 at 870.669 kb on + strand, within IAI47_04140 at 870.774 kb on + strand, within IAI47_04140 at 870.797 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.035 kb on - strand, within IAI47_04140 at 871.035 kb on - strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.045 kb on - strand, within IAI47_04140 at 871.045 kb on - strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.126 kb on - strand at 871.126 kb on - strand at 871.152 kb on + strand at 871.153 kb on - strand at 871.153 kb on - strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.157 kb on - strand at 871.164 kb on + strand at 871.176 kb on - strand at 871.181 kb on + strand at 871.181 kb on + strand at 871.182 kb on - strand at 871.182 kb on - strand at 871.193 kb on - strand at 871.236 kb on - strand at 871.236 kb on - strand at 871.269 kb on + strand at 871.322 kb on + strand, within IAI47_04145 at 871.322 kb on + strand, within IAI47_04145 at 871.323 kb on - strand, within IAI47_04145 at 871.402 kb on + strand, within IAI47_04145 at 871.402 kb on + strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.413 kb on + strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.416 kb on + strand, within IAI47_04145 at 871.417 kb on - strand, within IAI47_04145 at 871.417 kb on - strand, within IAI47_04145 at 871.417 kb on - strand, within IAI47_04145 at 871.432 kb on + strand, within IAI47_04145 at 871.433 kb on - strand, within IAI47_04145 at 871.433 kb on - strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.435 kb on - strand, within IAI47_04145 at 871.435 kb on - strand, within IAI47_04145 at 871.435 kb on - strand, within IAI47_04145 at 871.445 kb on - strand, within IAI47_04145 at 871.487 kb on - strand, within IAI47_04145 at 871.508 kb on - strand, within IAI47_04145 at 871.508 kb on - strand, within IAI47_04145 at 871.577 kb on + strand, within IAI47_04145 at 871.578 kb on - strand, within IAI47_04145 at 871.578 kb on - strand, within IAI47_04145 at 871.578 kb on - strand, within IAI47_04145 at 871.609 kb on + strand at 871.609 kb on + strand at 871.610 kb on - strand at 871.610 kb on - strand at 871.621 kb on + strand at 871.621 kb on + strand at 871.621 kb on + strand at 871.621 kb on + strand at 871.622 kb on - strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.663 kb on - strand at 871.670 kb on + strand at 871.722 kb on + strand at 871.722 kb on + strand at 871.723 kb on - strand at 871.751 kb on + strand at 871.752 kb on - strand at 871.752 kb on - strand at 871.752 kb on - strand at 871.769 kb on - strand at 871.784 kb on + strand at 871.784 kb on + strand at 871.784 kb on + strand at 871.785 kb on - strand at 871.790 kb on + strand at 871.806 kb on + strand at 871.806 kb on + strand at 871.819 kb on + strand at 871.820 kb on - strand at 871.826 kb on + strand at 871.827 kb on - strand at 871.827 kb on - strand at 871.827 kb on - strand at 871.839 kb on + strand at 871.839 kb on + strand at 871.839 kb on + strand at 871.840 kb on - strand at 871.840 kb on - strand at 871.840 kb on - strand at 871.840 kb on - strand at 871.844 kb on - strand at 871.844 kb on - strand at 871.844 kb on - strand at 871.850 kb on + strand at 871.851 kb on - strand at 871.851 kb on - strand at 871.853 kb on + strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.855 kb on + strand at 871.855 kb on + strand at 871.856 kb on - strand at 871.856 kb on - strand at 871.856 kb on - strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.907 kb on + strand at 871.907 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.985 kb on - strand at 872.004 kb on + strand at 872.005 kb on - strand at 872.038 kb on - strand at 872.054 kb on - strand at 872.054 kb on - strand at 872.069 kb on + strand at 872.088 kb on - strand at 872.088 kb on - strand at 872.117 kb on + strand, within IAI47_04150 at 872.117 kb on + strand, within IAI47_04150 at 872.118 kb on - strand, within IAI47_04150 at 872.203 kb on + strand, within IAI47_04150 at 872.203 kb on + strand, within IAI47_04150 at 872.204 kb on - strand, within IAI47_04150 at 872.226 kb on + strand, within IAI47_04150 at 872.226 kb on + strand, within IAI47_04150 at 872.226 kb on + strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.321 kb on + strand, within IAI47_04150 at 872.321 kb on + strand, within IAI47_04150 at 872.321 kb on + strand, within IAI47_04150 at 872.322 kb on - strand, within IAI47_04150 at 872.322 kb on - strand, within IAI47_04150 at 872.493 kb on + strand, within IAI47_04150 at 872.493 kb on + strand, within IAI47_04150 at 872.494 kb on - strand, within IAI47_04150 at 872.494 kb on - strand, within IAI47_04150 at 872.622 kb on + strand, within IAI47_04150 at 872.623 kb on - strand, within IAI47_04150 at 872.623 kb on - strand, within IAI47_04150
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 870,310 + -0.4 870,339 + -1.3 870,340 + +0.3 870,340 + -2.5 870,351 - -0.2 870,351 - -0.5 870,351 - -0.3 870,389 + +0.6 870,390 - -0.7 870,390 - -1.1 870,467 + -1.6 870,467 + +1.9 870,467 + +1.3 870,467 + +0.5 870,467 + -1.1 870,467 + +0.7 870,468 - +0.1 870,468 - -0.4 870,468 - -0.3 870,468 - +0.9 870,468 - +0.9 870,550 + +0.1 870,550 + +1.7 870,551 - +0.5 870,551 - +0.3 870,551 - +0.9 870,553 + -0.4 870,553 + +0.4 870,553 + -0.2 870,553 + -0.7 870,553 + +0.0 870,554 - +0.9 870,554 - +0.2 870,554 - +2.6 870,554 - +0.2 870,554 - -0.3 870,554 - +0.3 870,554 - +0.2 870,554 - +0.3 870,554 - -0.8 870,554 - -0.2 870,584 + IAI47_04140 0.12 -1.2 870,584 + IAI47_04140 0.12 +0.8 870,584 + IAI47_04140 0.12 +0.4 870,585 - IAI47_04140 0.12 +1.7 870,606 + IAI47_04140 0.15 +2.5 870,606 + IAI47_04140 0.15 -0.3 870,606 + IAI47_04140 0.15 +0.9 870,606 + IAI47_04140 0.15 +1.0 870,606 + IAI47_04140 0.15 +0.2 870,606 + IAI47_04140 0.15 +0.5 870,606 + IAI47_04140 0.15 -0.5 870,607 - IAI47_04140 0.16 +2.2 870,607 - IAI47_04140 0.16 -1.2 870,607 - IAI47_04140 0.16 -1.0 870,607 - IAI47_04140 0.16 +1.5 870,669 + IAI47_04140 0.25 -1.4 870,669 + IAI47_04140 0.25 +0.1 870,774 + IAI47_04140 0.40 -0.1 870,797 - IAI47_04140 0.44 -0.7 870,935 - IAI47_04140 0.64 +1.2 870,935 - IAI47_04140 0.64 +0.2 870,935 - IAI47_04140 0.64 +2.5 871,034 + IAI47_04140 0.79 -0.1 871,034 + IAI47_04140 0.79 +0.3 871,034 + IAI47_04140 0.79 -0.7 871,034 + IAI47_04140 0.79 +0.5 871,034 + IAI47_04140 0.79 +1.6 871,035 - IAI47_04140 0.79 -0.3 871,035 - IAI47_04140 0.79 +1.3 871,044 + IAI47_04140 0.81 +0.7 871,044 + IAI47_04140 0.81 +1.9 871,044 + IAI47_04140 0.81 +1.9 871,044 + IAI47_04140 0.81 -0.1 871,045 - IAI47_04140 0.81 +1.7 871,045 - IAI47_04140 0.81 -0.6 871,064 + IAI47_04140 0.84 +4.4 871,064 + IAI47_04140 0.84 +0.1 871,064 + IAI47_04140 0.84 -0.0 871,064 + IAI47_04140 0.84 +1.1 871,126 - +0.7 871,126 - -1.1 871,152 + +0.2 871,153 - -1.0 871,153 - -0.5 871,156 + -0.6 871,156 + -0.3 871,156 + -1.0 871,156 + -1.1 871,157 - -0.1 871,164 + +0.8 871,176 - +0.9 871,181 + +0.1 871,181 + -0.4 871,182 - -0.7 871,182 - +0.9 871,193 - -1.0 871,236 - -0.1 871,236 - -0.2 871,269 + -0.1 871,322 + IAI47_04145 0.15 -0.7 871,322 + IAI47_04145 0.15 +0.5 871,323 - IAI47_04145 0.15 -0.7 871,402 + IAI47_04145 0.37 +0.4 871,402 + IAI47_04145 0.37 +0.9 871,403 - IAI47_04145 0.38 -1.3 871,403 - IAI47_04145 0.38 -0.4 871,403 - IAI47_04145 0.38 +0.2 871,403 - IAI47_04145 0.38 +1.3 871,403 - IAI47_04145 0.38 -1.0 871,403 - IAI47_04145 0.38 -0.6 871,413 + IAI47_04145 0.40 -1.9 871,414 - IAI47_04145 0.41 +0.9 871,414 - IAI47_04145 0.41 +0.2 871,414 - IAI47_04145 0.41 +0.5 871,414 - IAI47_04145 0.41 +0.1 871,414 - IAI47_04145 0.41 +0.9 871,416 + IAI47_04145 0.41 -2.8 871,417 - IAI47_04145 0.41 -0.4 871,417 - IAI47_04145 0.41 +0.2 871,417 - IAI47_04145 0.41 -0.5 871,432 + IAI47_04145 0.46 +1.5 871,433 - IAI47_04145 0.46 +0.2 871,433 - IAI47_04145 0.46 -0.0 871,434 + IAI47_04145 0.46 +0.1 871,434 + IAI47_04145 0.46 -0.3 871,434 + IAI47_04145 0.46 +0.6 871,434 + IAI47_04145 0.46 +2.0 871,434 + IAI47_04145 0.46 -0.5 871,434 + IAI47_04145 0.46 +0.9 871,435 - IAI47_04145 0.46 -0.5 871,435 - IAI47_04145 0.46 +0.2 871,435 - IAI47_04145 0.46 -1.9 871,445 - IAI47_04145 0.49 -1.1 871,487 - IAI47_04145 0.61 +0.0 871,508 - IAI47_04145 0.67 -1.9 871,508 - IAI47_04145 0.67 -0.4 871,577 + IAI47_04145 0.86 -1.9 871,578 - IAI47_04145 0.86 +0.7 871,578 - IAI47_04145 0.86 -1.0 871,578 - IAI47_04145 0.86 +0.0 871,609 + -0.3 871,609 + +0.1 871,610 - -0.3 871,610 - +0.8 871,621 + +0.9 871,621 + -0.7 871,621 + +0.3 871,621 + +0.3 871,622 - +1.2 871,627 + -1.0 871,627 + +0.1 871,627 + +0.9 871,627 + +3.1 871,627 + -0.2 871,627 + +0.9 871,627 + +0.9 871,627 + -0.5 871,627 + +0.8 871,628 - +0.4 871,628 - -1.7 871,628 - -0.1 871,628 - +0.0 871,628 - +1.2 871,628 - +1.9 871,663 - +0.9 871,670 + +1.1 871,722 + +0.6 871,722 + +0.5 871,723 - +1.1 871,751 + +0.2 871,752 - -0.6 871,752 - -0.7 871,752 - -0.1 871,769 - +0.7 871,784 + -0.1 871,784 + -0.1 871,784 + -0.5 871,785 - -0.1 871,790 + +0.5 871,806 + +1.6 871,806 + -2.9 871,819 + -0.3 871,820 - -2.7 871,826 + +0.9 871,827 - -1.5 871,827 - -1.1 871,827 - -1.4 871,839 + +0.1 871,839 + -0.4 871,839 + -2.2 871,840 - -2.4 871,840 - -2.0 871,840 - -3.0 871,840 - -3.2 871,844 - -1.0 871,844 - -1.2 871,844 - +0.8 871,850 + -0.1 871,851 - -1.4 871,851 - -2.4 871,853 + -1.5 871,854 - +2.5 871,854 - -0.1 871,854 - -2.1 871,854 - -0.7 871,854 - -1.7 871,854 - -2.3 871,854 - -4.1 871,854 - -3.4 871,855 + -0.5 871,855 + +0.5 871,856 - -3.5 871,856 - -1.9 871,856 - -3.2 871,870 + -0.3 871,870 + -0.6 871,870 + -0.5 871,870 + -0.3 871,870 + -1.1 871,907 + +1.8 871,907 + -0.3 871,949 + -2.4 871,949 + -1.9 871,949 + -0.7 871,949 + -3.8 871,949 + -4.0 871,949 + -2.9 871,949 + -3.5 871,949 + +0.3 871,949 + -3.8 871,949 + -2.1 871,949 + -3.3 871,949 + -2.9 871,950 - -1.7 871,950 - -1.9 871,950 - -0.7 871,950 - -2.8 871,950 - -1.7 871,950 - -2.4 871,950 - -1.5 871,950 - -2.3 871,950 - -2.1 871,950 - -2.7 871,985 - -3.4 872,004 + -2.7 872,005 - -2.5 872,038 - -3.0 872,054 - -2.8 872,054 - -0.7 872,069 + -1.7 872,088 - -2.5 872,088 - -0.7 872,117 + IAI47_04150 0.11 -1.4 872,117 + IAI47_04150 0.11 -3.3 872,118 - IAI47_04150 0.11 -1.7 872,203 + IAI47_04150 0.15 -0.7 872,203 + IAI47_04150 0.15 -2.5 872,204 - IAI47_04150 0.15 -2.1 872,226 + IAI47_04150 0.17 -1.9 872,226 + IAI47_04150 0.17 -1.1 872,226 + IAI47_04150 0.17 -1.4 872,227 - IAI47_04150 0.17 -4.0 872,227 - IAI47_04150 0.17 -2.7 872,227 - IAI47_04150 0.17 -1.4 872,227 - IAI47_04150 0.17 -2.5 872,227 - IAI47_04150 0.17 -1.4 872,321 + IAI47_04150 0.22 -2.4 872,321 + IAI47_04150 0.22 -2.5 872,321 + IAI47_04150 0.22 -3.3 872,322 - IAI47_04150 0.22 -2.4 872,322 - IAI47_04150 0.22 -2.8 872,493 + IAI47_04150 0.31 -2.7 872,493 + IAI47_04150 0.31 -2.6 872,494 - IAI47_04150 0.31 -1.7 872,494 - IAI47_04150 0.31 -2.0 872,622 + IAI47_04150 0.39 -4.0 872,623 - IAI47_04150 0.39 -2.3 872,623 - IAI47_04150 0.39 -3.4
Or see this region's nucleotide sequence