Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03725 and IAI47_03730 are separated by 256 nucleotides IAI47_03730 and IAI47_03740 are separated by 314 nucleotides IAI47_03740 and IAI47_03745 are separated by 170 nucleotides
IAI47_03725: IAI47_03725 - phosphoglycerate dehydrogenase, at 777,383 to 778,621
_03725
IAI47_03730: IAI47_03730 - 5-formyltetrahydrofolate cyclo-ligase, at 778,878 to 779,471
_03730
IAI47_03740: IAI47_03740 - cell division protein ZapA, at 779,786 to 780,115
_03740
IAI47_03745: IAI47_03745 - YecA family protein, at 780,286 to 780,864
_03745
Position (kb) 778
779
780 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 777.908 kb on + strand, within IAI47_03725 at 777.920 kb on + strand, within IAI47_03725 at 777.920 kb on + strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.964 kb on - strand, within IAI47_03725 at 777.964 kb on - strand, within IAI47_03725 at 778.039 kb on + strand, within IAI47_03725 at 778.039 kb on + strand, within IAI47_03725 at 778.040 kb on - strand, within IAI47_03725 at 778.040 kb on - strand, within IAI47_03725 at 778.110 kb on + strand, within IAI47_03725 at 778.111 kb on - strand, within IAI47_03725 at 778.147 kb on + strand, within IAI47_03725 at 778.148 kb on - strand, within IAI47_03725 at 778.148 kb on - strand, within IAI47_03725 at 778.148 kb on - strand, within IAI47_03725 at 778.148 kb on - strand, within IAI47_03725 at 778.213 kb on + strand, within IAI47_03725 at 778.213 kb on + strand, within IAI47_03725 at 778.213 kb on + strand, within IAI47_03725 at 778.214 kb on - strand, within IAI47_03725 at 778.214 kb on - strand, within IAI47_03725 at 778.230 kb on - strand, within IAI47_03725 at 778.325 kb on + strand, within IAI47_03725 at 778.325 kb on + strand, within IAI47_03725 at 778.326 kb on - strand, within IAI47_03725 at 778.399 kb on + strand, within IAI47_03725 at 778.400 kb on - strand, within IAI47_03725 at 778.400 kb on - strand, within IAI47_03725 at 778.493 kb on + strand, within IAI47_03725 at 778.494 kb on - strand, within IAI47_03725 at 778.494 kb on - strand, within IAI47_03725 at 778.520 kb on + strand at 778.520 kb on + strand at 778.520 kb on + strand at 778.520 kb on + strand at 778.520 kb on + strand at 778.520 kb on + strand at 778.521 kb on - strand at 778.521 kb on - strand at 778.521 kb on - strand at 778.594 kb on + strand at 778.594 kb on + strand at 778.595 kb on - strand at 778.597 kb on + strand at 778.597 kb on + strand at 778.598 kb on - strand at 778.598 kb on - strand at 778.598 kb on - strand at 778.598 kb on - strand at 778.616 kb on + strand at 778.616 kb on + strand at 778.616 kb on + strand at 778.616 kb on + strand at 778.617 kb on - strand at 778.617 kb on - strand at 778.619 kb on + strand at 778.619 kb on + strand at 778.619 kb on + strand at 778.619 kb on - strand at 778.620 kb on - strand at 778.620 kb on - strand at 778.620 kb on - strand at 778.620 kb on - strand at 778.620 kb on - strand at 778.645 kb on + strand at 778.645 kb on + strand at 778.645 kb on + strand at 778.645 kb on + strand at 778.646 kb on - strand at 778.665 kb on + strand at 778.665 kb on + strand at 778.666 kb on - strand at 778.666 kb on - strand at 778.666 kb on - strand at 778.666 kb on - strand at 778.673 kb on - strand at 778.781 kb on + strand at 778.782 kb on - strand at 778.782 kb on - strand at 778.782 kb on - strand at 778.782 kb on - strand at 778.805 kb on + strand at 778.805 kb on + strand at 778.805 kb on + strand at 778.805 kb on + strand at 778.806 kb on - strand at 778.806 kb on - strand at 778.879 kb on + strand at 778.879 kb on + strand at 778.880 kb on - strand at 778.911 kb on + strand at 778.912 kb on - strand at 778.912 kb on - strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.927 kb on - strand at 778.927 kb on - strand at 778.927 kb on - strand at 778.927 kb on - strand at 778.927 kb on - strand at 779.029 kb on + strand, within IAI47_03730 at 779.029 kb on + strand, within IAI47_03730 at 779.029 kb on + strand, within IAI47_03730 at 779.030 kb on - strand, within IAI47_03730 at 779.030 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.165 kb on + strand, within IAI47_03730 at 779.165 kb on + strand, within IAI47_03730 at 779.166 kb on - strand, within IAI47_03730 at 779.166 kb on - strand, within IAI47_03730 at 779.166 kb on - strand, within IAI47_03730 at 779.189 kb on - strand, within IAI47_03730 at 779.239 kb on + strand, within IAI47_03730 at 779.240 kb on - strand, within IAI47_03730 at 779.240 kb on - strand, within IAI47_03730 at 779.240 kb on - strand, within IAI47_03730 at 779.286 kb on - strand, within IAI47_03730 at 779.286 kb on - strand, within IAI47_03730 at 779.336 kb on + strand, within IAI47_03730 at 779.336 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.348 kb on - strand, within IAI47_03730 at 779.348 kb on - strand, within IAI47_03730 at 779.351 kb on + strand, within IAI47_03730 at 779.351 kb on + strand, within IAI47_03730 at 779.352 kb on - strand, within IAI47_03730 at 779.352 kb on - strand, within IAI47_03730 at 779.352 kb on - strand, within IAI47_03730 at 779.424 kb on + strand at 779.425 kb on - strand at 779.425 kb on - strand at 779.451 kb on + strand at 779.451 kb on + strand at 779.451 kb on + strand at 779.452 kb on - strand at 779.452 kb on - strand at 779.452 kb on - strand at 779.452 kb on - strand at 779.459 kb on + strand at 779.502 kb on + strand at 779.503 kb on - strand at 779.503 kb on - strand at 779.503 kb on - strand at 779.521 kb on + strand at 779.522 kb on - strand at 779.522 kb on - strand at 779.522 kb on - strand at 779.522 kb on - strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.585 kb on + strand at 779.593 kb on - strand at 779.593 kb on - strand at 779.631 kb on + strand at 779.632 kb on - strand at 779.674 kb on - strand at 779.765 kb on + strand at 779.765 kb on + strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.768 kb on + strand at 779.768 kb on + strand at 779.769 kb on - strand at 779.769 kb on - strand at 779.770 kb on + strand at 779.770 kb on + strand at 779.771 kb on - strand at 779.771 kb on - strand at 779.771 kb on - strand at 779.771 kb on - strand at 779.835 kb on - strand, within IAI47_03740 at 779.835 kb on - strand, within IAI47_03740 at 779.835 kb on - strand, within IAI47_03740 at 779.835 kb on - strand, within IAI47_03740 at 779.835 kb on - strand, within IAI47_03740 at 779.835 kb on - strand, within IAI47_03740 at 779.863 kb on + strand, within IAI47_03740 at 779.864 kb on - strand, within IAI47_03740 at 779.864 kb on - strand, within IAI47_03740 at 779.869 kb on + strand, within IAI47_03740 at 779.870 kb on - strand, within IAI47_03740 at 779.881 kb on + strand, within IAI47_03740 at 779.882 kb on - strand, within IAI47_03740 at 779.882 kb on - strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.885 kb on - strand, within IAI47_03740 at 779.885 kb on - strand, within IAI47_03740 at 779.885 kb on - strand, within IAI47_03740 at 779.893 kb on - strand, within IAI47_03740 at 779.968 kb on + strand, within IAI47_03740 at 779.968 kb on + strand, within IAI47_03740 at 779.968 kb on + strand, within IAI47_03740 at 779.969 kb on - strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.994 kb on - strand, within IAI47_03740 at 780.031 kb on + strand, within IAI47_03740 at 780.031 kb on + strand, within IAI47_03740 at 780.031 kb on + strand, within IAI47_03740 at 780.032 kb on - strand, within IAI47_03740 at 780.093 kb on - strand at 780.098 kb on + strand at 780.134 kb on + strand at 780.134 kb on + strand at 780.154 kb on + strand at 780.154 kb on + strand at 780.154 kb on + strand at 780.155 kb on - strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.187 kb on - strand at 780.187 kb on - strand at 780.187 kb on - strand at 780.187 kb on - strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.201 kb on + strand at 780.201 kb on + strand at 780.202 kb on - strand at 780.202 kb on - strand at 780.202 kb on - strand at 780.206 kb on + strand at 780.206 kb on + strand at 780.207 kb on - strand at 780.207 kb on - strand at 780.207 kb on - strand at 780.238 kb on + strand at 780.239 kb on - strand at 780.239 kb on - strand at 780.244 kb on + strand at 780.244 kb on + strand at 780.245 kb on - strand at 780.249 kb on + strand at 780.249 kb on + strand at 780.249 kb on + strand at 780.250 kb on - strand at 780.260 kb on + strand at 780.260 kb on + strand at 780.261 kb on - strand at 780.285 kb on + strand at 780.285 kb on + strand at 780.285 kb on + strand at 780.285 kb on + strand at 780.286 kb on - strand at 780.286 kb on - strand at 780.293 kb on + strand at 780.293 kb on + strand at 780.293 kb on + strand at 780.294 kb on - strand at 780.294 kb on - strand at 780.294 kb on - strand at 780.313 kb on + strand at 780.313 kb on + strand at 780.354 kb on + strand, within IAI47_03745 at 780.354 kb on + strand, within IAI47_03745 at 780.354 kb on + strand, within IAI47_03745 at 780.354 kb on + strand, within IAI47_03745 at 780.355 kb on - strand, within IAI47_03745 at 780.383 kb on + strand, within IAI47_03745 at 780.434 kb on + strand, within IAI47_03745 at 780.434 kb on + strand, within IAI47_03745
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 777,908 + IAI47_03725 0.42 -5.2 777,920 + IAI47_03725 0.43 -4.1 777,920 + IAI47_03725 0.43 -2.3 777,921 - IAI47_03725 0.43 -2.9 777,921 - IAI47_03725 0.43 -3.5 777,921 - IAI47_03725 0.43 -2.8 777,964 - IAI47_03725 0.47 +1.9 777,964 - IAI47_03725 0.47 -4.0 778,039 + IAI47_03725 0.53 -1.1 778,039 + IAI47_03725 0.53 -1.7 778,040 - IAI47_03725 0.53 -3.7 778,040 - IAI47_03725 0.53 -1.9 778,110 + IAI47_03725 0.59 -2.7 778,111 - IAI47_03725 0.59 -2.4 778,147 + IAI47_03725 0.62 -2.1 778,148 - IAI47_03725 0.62 -3.6 778,148 - IAI47_03725 0.62 -3.1 778,148 - IAI47_03725 0.62 -2.3 778,148 - IAI47_03725 0.62 -2.7 778,213 + IAI47_03725 0.67 -2.8 778,213 + IAI47_03725 0.67 -6.1 778,213 + IAI47_03725 0.67 -0.7 778,214 - IAI47_03725 0.67 -3.0 778,214 - IAI47_03725 0.67 -3.3 778,230 - IAI47_03725 0.68 -3.3 778,325 + IAI47_03725 0.76 -3.0 778,325 + IAI47_03725 0.76 -1.4 778,326 - IAI47_03725 0.76 -2.3 778,399 + IAI47_03725 0.82 -2.3 778,400 - IAI47_03725 0.82 -2.8 778,400 - IAI47_03725 0.82 -3.7 778,493 + IAI47_03725 0.90 -2.1 778,494 - IAI47_03725 0.90 -3.0 778,494 - IAI47_03725 0.90 -1.4 778,520 + -3.6 778,520 + -3.2 778,520 + -2.3 778,520 + -2.7 778,520 + -2.1 778,520 + -3.3 778,521 - -3.4 778,521 - -3.3 778,521 - -1.7 778,594 + -1.7 778,594 + -1.1 778,595 - -1.4 778,597 + -1.7 778,597 + -4.9 778,598 - -2.4 778,598 - -2.8 778,598 - -2.8 778,598 - -1.9 778,616 + +0.3 778,616 + +0.1 778,616 + +0.7 778,616 + -0.1 778,617 - +0.3 778,617 - +0.2 778,619 + +0.1 778,619 + -1.2 778,619 + +1.9 778,619 - -2.8 778,620 - +0.9 778,620 - -1.1 778,620 - -0.1 778,620 - +0.1 778,620 - +0.2 778,645 + -0.7 778,645 + -0.7 778,645 + +2.5 778,645 + -0.1 778,646 - -1.3 778,665 + -0.1 778,665 + +0.9 778,666 - -0.1 778,666 - +0.9 778,666 - +0.4 778,666 - +0.2 778,673 - -1.4 778,781 + +1.5 778,782 - +0.1 778,782 - +0.2 778,782 - -1.9 778,782 - -1.7 778,805 + -0.3 778,805 + +3.2 778,805 + +0.4 778,805 + -0.7 778,806 - -0.7 778,806 - -1.7 778,879 + -0.0 778,879 + +0.1 778,880 - -1.7 778,911 + -1.7 778,912 - -0.1 778,912 - -1.6 778,926 + -1.3 778,926 + +0.5 778,926 + -0.1 778,926 + -1.2 778,926 + -1.4 778,926 + -0.8 778,926 + -1.4 778,926 + -2.3 778,926 + -1.9 778,927 - +0.0 778,927 - +0.6 778,927 - -1.6 778,927 - +1.9 778,927 - -0.5 779,029 + IAI47_03730 0.25 -0.4 779,029 + IAI47_03730 0.25 +0.9 779,029 + IAI47_03730 0.25 -1.1 779,030 - IAI47_03730 0.26 -0.9 779,030 - IAI47_03730 0.26 +0.0 779,151 - IAI47_03730 0.46 -0.9 779,151 - IAI47_03730 0.46 -0.2 779,151 - IAI47_03730 0.46 -0.9 779,151 - IAI47_03730 0.46 +0.9 779,154 + IAI47_03730 0.46 -2.7 779,154 + IAI47_03730 0.46 -0.4 779,154 + IAI47_03730 0.46 -1.0 779,154 + IAI47_03730 0.46 -3.0 779,154 + IAI47_03730 0.46 -0.1 779,155 - IAI47_03730 0.47 -0.1 779,155 - IAI47_03730 0.47 -0.9 779,155 - IAI47_03730 0.47 -0.7 779,155 - IAI47_03730 0.47 -1.6 779,155 - IAI47_03730 0.47 -1.2 779,160 - IAI47_03730 0.47 -0.7 779,160 - IAI47_03730 0.47 -1.7 779,160 - IAI47_03730 0.47 -0.7 779,160 - IAI47_03730 0.47 -0.3 779,165 + IAI47_03730 0.48 -1.2 779,165 + IAI47_03730 0.48 -1.9 779,166 - IAI47_03730 0.48 -2.1 779,166 - IAI47_03730 0.48 -1.8 779,166 - IAI47_03730 0.48 -1.4 779,189 - IAI47_03730 0.52 -1.5 779,239 + IAI47_03730 0.61 +0.7 779,240 - IAI47_03730 0.61 -1.1 779,240 - IAI47_03730 0.61 -1.0 779,240 - IAI47_03730 0.61 +0.9 779,286 - IAI47_03730 0.69 -0.1 779,286 - IAI47_03730 0.69 -0.1 779,336 + IAI47_03730 0.77 -0.4 779,336 + IAI47_03730 0.77 -2.3 779,347 + IAI47_03730 0.79 -1.1 779,347 + IAI47_03730 0.79 +0.2 779,347 + IAI47_03730 0.79 +0.3 779,347 + IAI47_03730 0.79 -2.0 779,348 - IAI47_03730 0.79 -0.8 779,348 - IAI47_03730 0.79 -1.7 779,351 + IAI47_03730 0.80 +0.3 779,351 + IAI47_03730 0.80 +0.9 779,352 - IAI47_03730 0.80 -1.3 779,352 - IAI47_03730 0.80 -1.0 779,352 - IAI47_03730 0.80 -2.1 779,424 + -1.7 779,425 - -0.9 779,425 - -0.1 779,451 + +0.4 779,451 + +0.1 779,451 + +0.7 779,452 - +0.9 779,452 - -1.4 779,452 - +0.3 779,452 - +0.6 779,459 + +0.9 779,502 + -0.1 779,503 - +0.1 779,503 - +1.1 779,503 - +0.5 779,521 + +0.5 779,522 - +0.4 779,522 - +0.4 779,522 - +0.2 779,522 - +0.1 779,523 + +0.0 779,523 + -0.5 779,523 + -0.8 779,523 + -0.5 779,523 + +0.4 779,523 + +0.5 779,523 + +0.7 779,523 + +0.8 779,523 + +0.0 779,524 - +0.3 779,524 - +0.9 779,524 - +1.3 779,524 - +0.4 779,524 - +0.5 779,524 - +1.2 779,524 - -1.1 779,524 - +0.3 779,585 + -0.1 779,593 - +1.9 779,593 - +0.7 779,631 + +1.1 779,632 - +0.0 779,674 - +0.6 779,765 + -2.4 779,765 + +2.1 779,766 - +0.3 779,766 - +0.1 779,766 - -0.1 779,766 - -0.9 779,766 - +0.0 779,766 - -0.3 779,766 - -0.7 779,768 + +0.6 779,768 + +1.2 779,769 - +1.5 779,769 - +0.2 779,770 + +0.4 779,770 + +1.3 779,771 - +0.5 779,771 - +1.4 779,771 - -0.3 779,771 - -1.0 779,835 - IAI47_03740 0.15 +0.1 779,835 - IAI47_03740 0.15 -0.9 779,835 - IAI47_03740 0.15 -1.4 779,835 - IAI47_03740 0.15 -0.1 779,835 - IAI47_03740 0.15 -0.1 779,835 - IAI47_03740 0.15 +0.5 779,863 + IAI47_03740 0.23 -1.0 779,864 - IAI47_03740 0.24 +0.4 779,864 - IAI47_03740 0.24 +0.1 779,869 + IAI47_03740 0.25 +0.4 779,870 - IAI47_03740 0.25 -0.1 779,881 + IAI47_03740 0.29 -0.2 779,882 - 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Or see this region's nucleotide sequence