Strain Fitness in Pantoea sp. MT58 around IAI47_03540

Experiment: Ying_Nucleobase14 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03530 and IAI47_03535 are separated by 91 nucleotidesIAI47_03535 and IAI47_03540 are separated by 28 nucleotidesIAI47_03540 and IAI47_03545 are separated by 561 nucleotides IAI47_03530: IAI47_03530 - heme ABC transporter ATP-binding protein, at 736,689 to 737,465 _03530 IAI47_03535: IAI47_03535 - CinA family protein, at 737,557 to 738,054 _03535 IAI47_03540: IAI47_03540 - oxidoreductase, at 738,083 to 739,066 _03540 IAI47_03545: IAI47_03545 - ornithine decarboxylase, at 739,628 to 741,781 _03545 Position (kb) 738 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 737.234 kb on - strand, within IAI47_03530at 737.270 kb on + strand, within IAI47_03530at 737.270 kb on + strand, within IAI47_03530at 737.271 kb on - strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.288 kb on + strand, within IAI47_03530at 737.288 kb on + strand, within IAI47_03530at 737.289 kb on - strand, within IAI47_03530at 737.317 kb on + strand, within IAI47_03530at 737.317 kb on + strand, within IAI47_03530at 737.318 kb on - strand, within IAI47_03530at 737.318 kb on - strand, within IAI47_03530at 737.318 kb on - strand, within IAI47_03530at 737.397 kb on + strandat 737.417 kb on - strandat 737.460 kb on - strandat 737.464 kb on - strandat 737.520 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.523 kb on - strandat 737.555 kb on + strandat 737.555 kb on + strandat 737.555 kb on + strandat 737.556 kb on - strandat 737.556 kb on - strandat 737.598 kb on + strandat 737.598 kb on + strandat 737.599 kb on - strandat 737.603 kb on + strandat 737.603 kb on + strandat 737.603 kb on + strandat 737.604 kb on - strandat 737.604 kb on - strandat 737.644 kb on - strand, within IAI47_03535at 737.661 kb on + strand, within IAI47_03535at 737.661 kb on + strand, within IAI47_03535at 737.661 kb on + strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535at 737.697 kb on - strand, within IAI47_03535at 737.698 kb on + strand, within IAI47_03535at 737.698 kb on + strand, within IAI47_03535at 737.698 kb on + strand, within IAI47_03535at 737.698 kb on + strand, within IAI47_03535at 737.698 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.700 kb on + strand, within IAI47_03535at 737.715 kb on - strand, within IAI47_03535at 737.715 kb on - strand, within IAI47_03535at 737.715 kb on - strand, within IAI47_03535at 737.715 kb on - strand, within IAI47_03535at 737.719 kb on + strand, within IAI47_03535at 737.719 kb on + strand, within IAI47_03535at 737.720 kb on - strand, within IAI47_03535at 737.720 kb on - strand, within IAI47_03535at 737.910 kb on + strand, within IAI47_03535at 737.910 kb on + strand, within IAI47_03535at 737.910 kb on + strand, within IAI47_03535at 737.910 kb on + strand, within IAI47_03535at 737.911 kb on - strand, within IAI47_03535at 737.911 kb on - strand, within IAI47_03535at 737.911 kb on - strand, within IAI47_03535at 737.911 kb on - strand, within IAI47_03535at 737.911 kb on - strand, within IAI47_03535at 738.075 kb on + strandat 738.075 kb on + strandat 738.076 kb on - strandat 738.292 kb on + strand, within IAI47_03540at 738.335 kb on - strand, within IAI47_03540at 738.335 kb on - strand, within IAI47_03540at 738.335 kb on - strand, within IAI47_03540at 738.367 kb on + strand, within IAI47_03540at 738.368 kb on - strand, within IAI47_03540at 738.391 kb on + strand, within IAI47_03540at 738.391 kb on + strand, within IAI47_03540at 738.391 kb on + strand, within IAI47_03540at 738.391 kb on + strand, within IAI47_03540at 738.391 kb on + strand, within IAI47_03540at 738.392 kb on - strand, within IAI47_03540at 738.392 kb on - strand, within IAI47_03540at 738.392 kb on - strand, within IAI47_03540at 738.392 kb on - strand, within IAI47_03540at 738.392 kb on - strand, within IAI47_03540at 738.410 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.543 kb on - strand, within IAI47_03540at 738.543 kb on - strand, within IAI47_03540at 738.543 kb on - strand, within IAI47_03540at 738.543 kb on - strand, within IAI47_03540at 738.543 kb on - strand, within IAI47_03540at 738.549 kb on + strand, within IAI47_03540at 738.549 kb on + strand, within IAI47_03540at 738.579 kb on + strand, within IAI47_03540at 738.579 kb on + strand, within IAI47_03540at 738.579 kb on + strand, within IAI47_03540at 738.580 kb on - strand, within IAI47_03540at 738.580 kb on - strand, within IAI47_03540at 738.857 kb on + strand, within IAI47_03540at 738.857 kb on + strand, within IAI47_03540at 738.878 kb on - strand, within IAI47_03540at 738.905 kb on + strand, within IAI47_03540at 738.925 kb on + strand, within IAI47_03540at 738.926 kb on - strand, within IAI47_03540at 738.926 kb on - strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.943 kb on - strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 739.026 kb on + strandat 739.102 kb on + strandat 739.103 kb on - strandat 739.117 kb on + strandat 739.118 kb on - strandat 739.118 kb on - strandat 739.191 kb on + strandat 739.191 kb on + strandat 739.191 kb on + strandat 739.191 kb on + strandat 739.192 kb on - strandat 739.192 kb on - strandat 739.192 kb on - strandat 739.215 kb on + strandat 739.256 kb on - strandat 739.331 kb on - strandat 739.348 kb on - strandat 739.348 kb on - strandat 739.427 kb on - strandat 739.482 kb on - strandat 739.542 kb on + strandat 739.542 kb on + strandat 739.543 kb on - strandat 739.557 kb on - strandat 739.559 kb on + strandat 739.559 kb on + strandat 739.560 kb on - strandat 739.560 kb on - strandat 739.616 kb on - strandat 739.628 kb on - strandat 739.628 kb on - strandat 739.628 kb on - strandat 739.698 kb on + strandat 739.698 kb on + strandat 739.699 kb on - strandat 739.699 kb on - strandat 739.699 kb on - strandat 739.723 kb on + strandat 739.724 kb on - strandat 739.792 kb on + strandat 739.801 kb on + strandat 739.801 kb on + strandat 739.922 kb on + strand, within IAI47_03545at 739.922 kb on + strand, within IAI47_03545at 739.923 kb on - strand, within IAI47_03545at 739.923 kb on - strand, within IAI47_03545at 739.935 kb on + strand, within IAI47_03545at 739.935 kb on + strand, within IAI47_03545at 739.935 kb on + strand, within IAI47_03545at 739.935 kb on + strand, within IAI47_03545at 739.935 kb on + strand, within IAI47_03545at 739.936 kb on - strand, within IAI47_03545at 739.936 kb on - strand, within IAI47_03545at 739.967 kb on + strand, within IAI47_03545at 739.967 kb on + strand, within IAI47_03545at 739.968 kb on - strand, within IAI47_03545at 739.968 kb on - strand, within IAI47_03545at 739.968 kb on - strand, within IAI47_03545at 740.027 kb on - strand, within IAI47_03545at 740.027 kb on - strand, within IAI47_03545at 740.027 kb on - strand, within IAI47_03545at 740.027 kb on - strand, within IAI47_03545at 740.054 kb on + strand, within IAI47_03545at 740.054 kb on + strand, within IAI47_03545at 740.055 kb on - strand, within IAI47_03545at 740.064 kb on - strand, within IAI47_03545

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2
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737,234 - IAI47_03530 0.70 -0.1
737,270 + IAI47_03530 0.75 -0.4
737,270 + IAI47_03530 0.75 +0.4
737,271 - IAI47_03530 0.75 -0.6
737,278 + IAI47_03530 0.76 +0.6
737,278 + IAI47_03530 0.76 +1.4
737,278 + IAI47_03530 0.76 +0.3
737,278 + IAI47_03530 0.76 -1.0
737,278 + IAI47_03530 0.76 -0.2
737,278 + IAI47_03530 0.76 +0.1
737,279 - IAI47_03530 0.76 -0.1
737,279 - IAI47_03530 0.76 +0.0
737,279 - IAI47_03530 0.76 -1.4
737,279 - IAI47_03530 0.76 -0.6
737,279 - IAI47_03530 0.76 -0.2
737,279 - IAI47_03530 0.76 -0.1
737,279 - IAI47_03530 0.76 -0.6
737,279 - IAI47_03530 0.76 +0.3
737,288 + IAI47_03530 0.77 +0.9
737,288 + IAI47_03530 0.77 -1.1
737,289 - IAI47_03530 0.77 -0.6
737,317 + IAI47_03530 0.81 -0.5
737,317 + IAI47_03530 0.81 -0.3
737,318 - IAI47_03530 0.81 +0.9
737,318 - IAI47_03530 0.81 +0.8
737,318 - IAI47_03530 0.81 -1.0
737,397 + +0.3
737,417 - -0.8
737,460 - +0.5
737,464 - +1.3
737,520 + -0.5
737,522 + +0.2
737,522 + -0.7
737,522 + -0.1
737,522 + +0.9
737,522 + -1.4
737,523 - -0.6
737,555 + -1.3
737,555 + -0.8
737,555 + +0.1
737,556 - -0.4
737,556 - +0.3
737,598 + -0.7
737,598 + +0.4
737,599 - +0.1
737,603 + -0.4
737,603 + -0.7
737,603 + -1.1
737,604 - +0.9
737,604 - +0.3
737,644 - IAI47_03535 0.17 +0.9
737,661 + IAI47_03535 0.21 -0.1
737,661 + IAI47_03535 0.21 +0.9
737,661 + IAI47_03535 0.21 -0.1
737,662 - IAI47_03535 0.21 +0.9
737,662 - IAI47_03535 0.21 +1.3
737,662 - IAI47_03535 0.21 +0.5
737,662 - IAI47_03535 0.21 -0.5
737,697 - IAI47_03535 0.28 -3.1
737,698 + IAI47_03535 0.28 -1.5
737,698 + IAI47_03535 0.28 +0.3
737,698 + IAI47_03535 0.28 +0.2
737,698 + IAI47_03535 0.28 +0.3
737,698 - IAI47_03535 0.28 +0.2
737,699 - IAI47_03535 0.29 +0.6
737,699 - IAI47_03535 0.29 +1.9
737,699 - IAI47_03535 0.29 +0.8
737,699 - IAI47_03535 0.29 +0.3
737,699 - IAI47_03535 0.29 +0.1
737,699 - IAI47_03535 0.29 +0.2
737,699 - IAI47_03535 0.29 -0.3
737,700 + IAI47_03535 0.29 -0.1
737,715 - IAI47_03535 0.32 +0.1
737,715 - IAI47_03535 0.32 -0.6
737,715 - IAI47_03535 0.32 -0.2
737,715 - IAI47_03535 0.32 -0.9
737,719 + IAI47_03535 0.33 +1.1
737,719 + IAI47_03535 0.33 +0.2
737,720 - IAI47_03535 0.33 -1.0
737,720 - IAI47_03535 0.33 -0.8
737,910 + IAI47_03535 0.71 -1.3
737,910 + IAI47_03535 0.71 -1.0
737,910 + IAI47_03535 0.71 -1.7
737,910 + IAI47_03535 0.71 -1.0
737,911 - IAI47_03535 0.71 -0.1
737,911 - IAI47_03535 0.71 +0.1
737,911 - IAI47_03535 0.71 +0.2
737,911 - IAI47_03535 0.71 -0.2
737,911 - IAI47_03535 0.71 +1.1
738,075 + -0.4
738,075 + +4.1
738,076 - +0.4
738,292 + IAI47_03540 0.21 +0.6
738,335 - IAI47_03540 0.26 +1.9
738,335 - IAI47_03540 0.26 +0.3
738,335 - IAI47_03540 0.26 +0.9
738,367 + IAI47_03540 0.29 +0.4
738,368 - IAI47_03540 0.29 +0.0
738,391 + IAI47_03540 0.31 -1.4
738,391 + IAI47_03540 0.31 -0.3
738,391 + IAI47_03540 0.31 -1.7
738,391 + IAI47_03540 0.31 +1.3
738,391 + IAI47_03540 0.31 +0.9
738,392 - IAI47_03540 0.31 +0.4
738,392 - IAI47_03540 0.31 +0.9
738,392 - IAI47_03540 0.31 +0.5
738,392 - IAI47_03540 0.31 +0.9
738,392 - IAI47_03540 0.31 +1.3
738,410 + IAI47_03540 0.33 +1.9
738,507 + IAI47_03540 0.43 +0.5
738,507 + IAI47_03540 0.43 +0.6
738,507 + IAI47_03540 0.43 +3.2
738,507 + IAI47_03540 0.43 -0.9
738,507 + IAI47_03540 0.43 +0.1
738,507 + IAI47_03540 0.43 +0.5
738,508 - IAI47_03540 0.43 +0.6
738,508 - IAI47_03540 0.43 +2.2
738,508 - IAI47_03540 0.43 +1.6
738,508 - IAI47_03540 0.43 -0.1
738,508 - IAI47_03540 0.43 -0.2
738,508 - IAI47_03540 0.43 +0.0
738,542 + IAI47_03540 0.47 +0.6
738,542 + IAI47_03540 0.47 -0.0
738,542 + IAI47_03540 0.47 +0.6
738,542 + IAI47_03540 0.47 +0.4
738,542 + IAI47_03540 0.47 -0.3
738,542 + IAI47_03540 0.47 +0.0
738,542 + IAI47_03540 0.47 +1.6
738,542 + IAI47_03540 0.47 -0.2
738,542 + IAI47_03540 0.47 -0.4
738,542 + IAI47_03540 0.47 +0.3
738,543 - IAI47_03540 0.47 -0.4
738,543 - IAI47_03540 0.47 +1.6
738,543 - IAI47_03540 0.47 +0.1
738,543 - IAI47_03540 0.47 -0.1
738,543 - IAI47_03540 0.47 +0.7
738,549 + IAI47_03540 0.47 -0.5
738,549 + IAI47_03540 0.47 -0.1
738,579 + IAI47_03540 0.50 +0.6
738,579 + IAI47_03540 0.50 +0.6
738,579 + IAI47_03540 0.50 +1.0
738,580 - IAI47_03540 0.51 +0.1
738,580 - IAI47_03540 0.51 +0.2
738,857 + IAI47_03540 0.79 +1.2
738,857 + IAI47_03540 0.79 -0.1
738,878 - IAI47_03540 0.81 -1.4
738,905 + IAI47_03540 0.84 -0.9
738,925 + IAI47_03540 0.86 -0.7
738,926 - IAI47_03540 0.86 +0.5
738,926 - IAI47_03540 0.86 -0.1
738,942 + IAI47_03540 0.87 +1.1
738,942 + IAI47_03540 0.87 -1.3
738,942 + IAI47_03540 0.87 +0.3
738,942 + IAI47_03540 0.87 -0.3
738,942 + IAI47_03540 0.87 +1.5
738,942 + IAI47_03540 0.87 +0.6
738,942 + IAI47_03540 0.87 +0.9
738,943 - IAI47_03540 0.87 -0.6
738,957 + IAI47_03540 0.89 +1.4
738,957 + IAI47_03540 0.89 -0.4
738,957 + IAI47_03540 0.89 +0.3
738,957 + IAI47_03540 0.89 -0.5
738,957 + IAI47_03540 0.89 -2.2
738,957 + IAI47_03540 0.89 -1.9
738,958 - IAI47_03540 0.89 -1.7
738,958 - IAI47_03540 0.89 +0.5
738,958 - IAI47_03540 0.89 -0.7
738,958 - IAI47_03540 0.89 +0.9
738,958 - IAI47_03540 0.89 -0.3
738,958 - IAI47_03540 0.89 +0.2
738,958 - IAI47_03540 0.89 +0.3
739,026 + +0.6
739,102 + -0.2
739,103 - +0.6
739,117 + -1.3
739,118 - -0.3
739,118 - -0.5
739,191 + +0.9
739,191 + +0.3
739,191 + +1.5
739,191 + -0.7
739,192 - +0.5
739,192 - -0.7
739,192 - +1.2
739,215 + -0.0
739,256 - +0.4
739,331 - +1.2
739,348 - +0.7
739,348 - +1.9
739,427 - +0.4
739,482 - +0.7
739,542 + -1.1
739,542 + +0.2
739,543 - -0.1
739,557 - -0.6
739,559 + +0.9
739,559 + -1.4
739,560 - +0.3
739,560 - -0.7
739,616 - -0.1
739,628 - +0.0
739,628 - -0.5
739,628 - -1.9
739,698 + -0.3
739,698 + +1.8
739,699 - +0.6
739,699 - -0.1
739,699 - -0.3
739,723 + -0.3
739,724 - +0.2
739,792 + -1.3
739,801 + -1.4
739,801 + +1.7
739,922 + IAI47_03545 0.14 +0.5
739,922 + IAI47_03545 0.14 +0.9
739,923 - IAI47_03545 0.14 -0.3
739,923 - IAI47_03545 0.14 -0.8
739,935 + IAI47_03545 0.14 +0.2
739,935 + IAI47_03545 0.14 +0.3
739,935 + IAI47_03545 0.14 +0.3
739,935 + IAI47_03545 0.14 +0.5
739,935 + IAI47_03545 0.14 -0.4
739,936 - IAI47_03545 0.14 +0.4
739,936 - IAI47_03545 0.14 +0.8
739,967 + IAI47_03545 0.16 +0.1
739,967 + IAI47_03545 0.16 -0.8
739,968 - IAI47_03545 0.16 -0.3
739,968 - IAI47_03545 0.16 -1.0
739,968 - IAI47_03545 0.16 +1.9
740,027 - IAI47_03545 0.19 +0.4
740,027 - IAI47_03545 0.19 +0.2
740,027 - IAI47_03545 0.19 +0.5
740,027 - IAI47_03545 0.19 +0.2
740,054 + IAI47_03545 0.20 -0.3
740,054 + IAI47_03545 0.20 +0.9
740,055 - IAI47_03545 0.20 -0.6
740,064 - IAI47_03545 0.20 +0.2

Or see this region's nucleotide sequence