Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03395 and IAI47_03400 are separated by 248 nucleotides IAI47_03400 and IAI47_03405 are separated by 61 nucleotides
IAI47_03395: IAI47_03395 - metal-dependent hydrolase, at 707,854 to 708,651
_03395
IAI47_03400: IAI47_03400 - deoxyribose-phosphate aldolase, at 708,900 to 709,679
_03400
IAI47_03405: IAI47_03405 - thymidine phosphorylase, at 709,741 to 711,069
_03405
Position (kb) 708
709
710 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 708.025 kb on + strand, within IAI47_03395 at 708.025 kb on + strand, within IAI47_03395 at 708.026 kb on - strand, within IAI47_03395 at 708.098 kb on + strand, within IAI47_03395 at 708.099 kb on - strand, within IAI47_03395 at 708.155 kb on - strand, within IAI47_03395 at 708.155 kb on - strand, within IAI47_03395 at 708.177 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.223 kb on + strand, within IAI47_03395 at 708.354 kb on + strand, within IAI47_03395 at 708.355 kb on - strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.358 kb on - strand, within IAI47_03395 at 708.358 kb on - strand, within IAI47_03395 at 708.358 kb on - strand, within IAI47_03395 at 708.358 kb on - strand, within IAI47_03395 at 708.393 kb on + strand, within IAI47_03395 at 708.393 kb on + strand, within IAI47_03395 at 708.393 kb on + strand, within IAI47_03395 at 708.393 kb on + strand, within IAI47_03395 at 708.394 kb on - strand, within IAI47_03395 at 708.394 kb on - strand, within IAI47_03395 at 708.394 kb on - strand, within IAI47_03395 at 708.397 kb on + strand, within IAI47_03395 at 708.397 kb on + strand, within IAI47_03395 at 708.397 kb on + strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.477 kb on + strand, within IAI47_03395 at 708.646 kb on - strand at 708.646 kb on - strand at 708.697 kb on + strand at 708.697 kb on + strand at 708.703 kb on + strand at 708.703 kb on + strand at 708.723 kb on + strand at 708.723 kb on + strand at 708.723 kb on + strand at 708.724 kb on - strand at 708.724 kb on - strand at 708.724 kb on - strand at 708.724 kb on - strand at 708.724 kb on - strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.745 kb on - strand at 708.745 kb on - strand at 708.745 kb on - strand at 708.818 kb on + strand at 708.818 kb on + strand at 708.818 kb on + strand at 708.819 kb on - strand at 708.819 kb on - strand at 708.819 kb on - strand at 708.843 kb on - strand at 709.007 kb on + strand, within IAI47_03400 at 709.007 kb on + strand, within IAI47_03400 at 709.040 kb on + strand, within IAI47_03400 at 709.040 kb on + strand, within IAI47_03400 at 709.040 kb on + strand, within IAI47_03400 at 709.040 kb on + strand, within IAI47_03400 at 709.040 kb on + strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.044 kb on + strand, within IAI47_03400 at 709.045 kb on - strand, within IAI47_03400 at 709.056 kb on - strand, within IAI47_03400 at 709.071 kb on - strand, within IAI47_03400 at 709.185 kb on + strand, within IAI47_03400 at 709.185 kb on + strand, within IAI47_03400 at 709.274 kb on + strand, within IAI47_03400 at 709.412 kb on + strand, within IAI47_03400 at 709.431 kb on - strand, within IAI47_03400 at 709.516 kb on + strand, within IAI47_03400 at 709.516 kb on + strand, within IAI47_03400 at 709.517 kb on - strand, within IAI47_03400 at 709.520 kb on + strand, within IAI47_03400 at 709.520 kb on + strand, within IAI47_03400 at 709.542 kb on + strand, within IAI47_03400 at 709.542 kb on + strand, within IAI47_03400 at 709.543 kb on - strand, within IAI47_03400 at 709.543 kb on - strand, within IAI47_03400 at 709.562 kb on + strand, within IAI47_03400 at 709.562 kb on + strand, within IAI47_03400 at 709.562 kb on + strand, within IAI47_03400 at 709.562 kb on + strand, within IAI47_03400 at 709.562 kb on + strand, within IAI47_03400 at 709.563 kb on - strand, within IAI47_03400 at 709.563 kb on - strand, within IAI47_03400 at 709.563 kb on - strand, within IAI47_03400 at 709.634 kb on + strand at 709.634 kb on + strand at 709.634 kb on + strand at 709.634 kb on + strand at 709.635 kb on - strand at 709.674 kb on + strand at 709.674 kb on + strand at 709.738 kb on - strand at 709.738 kb on - strand at 709.761 kb on + strand at 709.819 kb on - strand at 709.833 kb on + strand at 709.833 kb on + strand at 709.834 kb on - strand at 709.879 kb on + strand, within IAI47_03405 at 709.879 kb on + strand, within IAI47_03405 at 709.879 kb on + strand, within IAI47_03405 at 709.880 kb on - strand, within IAI47_03405 at 709.880 kb on - strand, within IAI47_03405 at 709.880 kb on - strand, within IAI47_03405 at 709.880 kb on - strand, within IAI47_03405 at 709.890 kb on + strand, within IAI47_03405 at 709.890 kb on + strand, within IAI47_03405 at 709.891 kb on - strand, within IAI47_03405 at 709.950 kb on + strand, within IAI47_03405 at 709.989 kb on + strand, within IAI47_03405 at 710.018 kb on + strand, within IAI47_03405 at 710.018 kb on + strand, within IAI47_03405 at 710.018 kb on + strand, within IAI47_03405 at 710.018 kb on + strand, within IAI47_03405 at 710.018 kb on + strand, within IAI47_03405 at 710.019 kb on - strand, within IAI47_03405 at 710.019 kb on - strand, within IAI47_03405 at 710.033 kb on + strand, within IAI47_03405 at 710.033 kb on + strand, within IAI47_03405 at 710.033 kb on + strand, within IAI47_03405 at 710.033 kb on + strand, within IAI47_03405 at 710.034 kb on - strand, within IAI47_03405 at 710.034 kb on - strand, within IAI47_03405 at 710.062 kb on + strand, within IAI47_03405 at 710.062 kb on + strand, within IAI47_03405 at 710.063 kb on - strand, within IAI47_03405 at 710.142 kb on + strand, within IAI47_03405 at 710.142 kb on + strand, within IAI47_03405 at 710.143 kb on - strand, within IAI47_03405 at 710.143 kb on - strand, within IAI47_03405 at 710.179 kb on - strand, within IAI47_03405 at 710.242 kb on + strand, within IAI47_03405 at 710.242 kb on + strand, within IAI47_03405 at 710.243 kb on - strand, within IAI47_03405 at 710.370 kb on + strand, within IAI47_03405 at 710.371 kb on - strand, within IAI47_03405 at 710.380 kb on + strand, within IAI47_03405 at 710.380 kb on + strand, within IAI47_03405 at 710.380 kb on + strand, within IAI47_03405 at 710.380 kb on + strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 708,025 + IAI47_03395 0.21 -1.7 708,025 + IAI47_03395 0.21 -0.2 708,026 - IAI47_03395 0.22 +0.9 708,098 + IAI47_03395 0.31 -0.0 708,099 - IAI47_03395 0.31 -0.6 708,155 - IAI47_03395 0.38 -1.5 708,155 - IAI47_03395 0.38 -0.5 708,177 + IAI47_03395 0.40 +0.5 708,207 + IAI47_03395 0.44 +1.5 708,207 + IAI47_03395 0.44 +0.7 708,207 + IAI47_03395 0.44 +2.0 708,207 + IAI47_03395 0.44 -0.5 708,207 + IAI47_03395 0.44 -0.9 708,207 + IAI47_03395 0.44 +1.9 708,207 + IAI47_03395 0.44 +0.2 708,208 - IAI47_03395 0.44 +0.1 708,208 - IAI47_03395 0.44 +0.5 708,208 - IAI47_03395 0.44 -0.5 708,208 - IAI47_03395 0.44 +1.9 708,208 - IAI47_03395 0.44 -0.2 708,208 - IAI47_03395 0.44 -0.1 708,223 + IAI47_03395 0.46 -0.2 708,354 + IAI47_03395 0.63 -0.2 708,355 - IAI47_03395 0.63 -0.2 708,357 + IAI47_03395 0.63 +0.9 708,357 + IAI47_03395 0.63 +0.5 708,357 + IAI47_03395 0.63 -0.8 708,357 + IAI47_03395 0.63 +1.2 708,357 + IAI47_03395 0.63 +0.0 708,357 + IAI47_03395 0.63 +0.1 708,358 - IAI47_03395 0.63 -0.0 708,358 - IAI47_03395 0.63 +0.2 708,358 - IAI47_03395 0.63 +0.3 708,358 - IAI47_03395 0.63 +0.3 708,393 + IAI47_03395 0.68 +1.0 708,393 + IAI47_03395 0.68 +0.4 708,393 + IAI47_03395 0.68 +0.6 708,393 + IAI47_03395 0.68 +0.2 708,394 - IAI47_03395 0.68 -0.7 708,394 - IAI47_03395 0.68 +0.4 708,394 - IAI47_03395 0.68 -0.6 708,397 + IAI47_03395 0.68 +0.9 708,397 + IAI47_03395 0.68 +1.6 708,397 + IAI47_03395 0.68 -0.1 708,398 - IAI47_03395 0.68 -0.6 708,398 - IAI47_03395 0.68 -1.4 708,398 - IAI47_03395 0.68 -0.6 708,398 - IAI47_03395 0.68 +0.6 708,398 - IAI47_03395 0.68 +0.2 708,398 - IAI47_03395 0.68 -0.1 708,398 - IAI47_03395 0.68 +0.9 708,398 - IAI47_03395 0.68 +1.1 708,477 + IAI47_03395 0.78 +0.9 708,646 - -0.1 708,646 - +1.1 708,697 + +0.4 708,697 + +1.4 708,703 + +2.5 708,703 + -0.1 708,723 + +0.2 708,723 + -1.0 708,723 + -1.0 708,724 - -0.6 708,724 - +1.5 708,724 - -0.1 708,724 - +0.9 708,724 - +0.9 708,725 + +1.2 708,725 + +1.7 708,725 + +1.5 708,725 + +0.3 708,725 + +0.4 708,725 + +0.9 708,725 + +1.7 708,725 + +1.5 708,725 + +1.1 708,725 + -0.1 708,725 + +0.3 708,725 + +0.7 708,725 + +1.0 708,725 + +0.4 708,725 + -0.4 708,725 + +1.1 708,725 + +0.2 708,725 + +0.3 708,725 + +0.6 708,725 + +1.1 708,725 + -0.0 708,725 + -0.2 708,725 + +0.8 708,725 + +1.6 708,725 + -0.8 708,725 + -1.5 708,725 + +0.6 708,725 + +0.7 708,725 + +3.0 708,726 - +0.5 708,726 - +0.9 708,726 - +1.6 708,726 - +0.3 708,726 - -0.3 708,726 - -1.9 708,726 - +0.5 708,726 - +0.1 708,726 - -1.9 708,726 - -0.5 708,726 - +1.4 708,726 - -1.0 708,726 - +0.2 708,726 - -0.1 708,726 - +1.3 708,745 - +0.4 708,745 - -0.2 708,745 - +0.1 708,818 + +0.9 708,818 + +0.2 708,818 + -0.4 708,819 - -0.8 708,819 - -1.1 708,819 - -2.4 708,843 - -0.1 709,007 + IAI47_03400 0.14 +1.5 709,007 + IAI47_03400 0.14 -0.1 709,040 + IAI47_03400 0.18 -0.0 709,040 + IAI47_03400 0.18 +0.5 709,040 + IAI47_03400 0.18 +0.9 709,040 + IAI47_03400 0.18 +1.5 709,040 + IAI47_03400 0.18 -0.9 709,041 - IAI47_03400 0.18 -0.1 709,041 - IAI47_03400 0.18 -0.5 709,041 - IAI47_03400 0.18 -0.9 709,041 - IAI47_03400 0.18 +3.2 709,041 - IAI47_03400 0.18 +0.6 709,041 - IAI47_03400 0.18 +2.5 709,044 + IAI47_03400 0.18 +0.3 709,045 - IAI47_03400 0.19 -0.7 709,056 - IAI47_03400 0.20 -0.7 709,071 - IAI47_03400 0.22 +0.6 709,185 + IAI47_03400 0.37 +0.8 709,185 + IAI47_03400 0.37 +0.6 709,274 + IAI47_03400 0.48 -0.4 709,412 + IAI47_03400 0.66 -0.3 709,431 - IAI47_03400 0.68 -0.3 709,516 + IAI47_03400 0.79 +1.1 709,516 + IAI47_03400 0.79 -1.1 709,517 - IAI47_03400 0.79 -0.5 709,520 + IAI47_03400 0.79 +0.9 709,520 + IAI47_03400 0.79 +0.8 709,542 + IAI47_03400 0.82 +0.8 709,542 + IAI47_03400 0.82 +1.3 709,543 - IAI47_03400 0.82 +0.4 709,543 - IAI47_03400 0.82 -0.5 709,562 + IAI47_03400 0.85 +1.2 709,562 + IAI47_03400 0.85 +1.1 709,562 + IAI47_03400 0.85 -0.7 709,562 + IAI47_03400 0.85 +2.5 709,562 + IAI47_03400 0.85 -0.2 709,563 - IAI47_03400 0.85 -0.1 709,563 - IAI47_03400 0.85 -0.2 709,563 - IAI47_03400 0.85 +0.9 709,634 + -0.1 709,634 + +1.6 709,634 + -0.6 709,634 + +0.1 709,635 - +1.3 709,674 + +2.5 709,674 + +0.0 709,738 - +0.3 709,738 - +0.3 709,761 + +1.9 709,819 - -0.3 709,833 + -0.7 709,833 + -0.4 709,834 - +0.9 709,879 + IAI47_03405 0.10 +0.1 709,879 + IAI47_03405 0.10 +1.1 709,879 + IAI47_03405 0.10 +0.3 709,880 - IAI47_03405 0.10 -1.8 709,880 - IAI47_03405 0.10 -1.1 709,880 - IAI47_03405 0.10 +0.1 709,880 - IAI47_03405 0.10 -0.0 709,890 + IAI47_03405 0.11 +0.7 709,890 + IAI47_03405 0.11 +0.5 709,891 - IAI47_03405 0.11 +0.1 709,950 + IAI47_03405 0.16 +0.1 709,989 + IAI47_03405 0.19 -2.6 710,018 + IAI47_03405 0.21 -0.1 710,018 + IAI47_03405 0.21 +3.5 710,018 + IAI47_03405 0.21 +0.2 710,018 + IAI47_03405 0.21 -0.4 710,018 + IAI47_03405 0.21 +1.2 710,019 - IAI47_03405 0.21 +2.1 710,019 - IAI47_03405 0.21 +0.3 710,033 + IAI47_03405 0.22 +0.5 710,033 + IAI47_03405 0.22 +0.4 710,033 + IAI47_03405 0.22 +0.9 710,033 + IAI47_03405 0.22 +0.0 710,034 - IAI47_03405 0.22 +0.9 710,034 - IAI47_03405 0.22 +0.6 710,062 + IAI47_03405 0.24 -0.2 710,062 + IAI47_03405 0.24 -0.2 710,063 - IAI47_03405 0.24 -0.4 710,142 + IAI47_03405 0.30 +0.9 710,142 + IAI47_03405 0.30 +0.6 710,143 - IAI47_03405 0.30 +0.5 710,143 - IAI47_03405 0.30 -0.1 710,179 - IAI47_03405 0.33 -1.1 710,242 + IAI47_03405 0.38 +0.2 710,242 + IAI47_03405 0.38 +0.1 710,243 - IAI47_03405 0.38 +0.2 710,370 + IAI47_03405 0.47 +0.7 710,371 - IAI47_03405 0.47 -0.2 710,380 + IAI47_03405 0.48 +0.8 710,380 + IAI47_03405 0.48 +0.4 710,380 + IAI47_03405 0.48 -0.1 710,380 + IAI47_03405 0.48 +1.9 710,381 - IAI47_03405 0.48 +1.1 710,381 - IAI47_03405 0.48 +1.9 710,381 - IAI47_03405 0.48 -1.7 710,381 - IAI47_03405 0.48 -1.2 710,381 - IAI47_03405 0.48 +0.5 710,381 - IAI47_03405 0.48 +1.2 710,381 - IAI47_03405 0.48 +0.9 710,381 - IAI47_03405 0.48 +1.3 710,381 - IAI47_03405 0.48 +1.1 710,381 - IAI47_03405 0.48 -0.4 710,381 - IAI47_03405 0.48 -0.5 710,381 - IAI47_03405 0.48 -0.0 710,381 - IAI47_03405 0.48 -0.4
Or see this region's nucleotide sequence