Strain Fitness in Pantoea sp. MT58 around IAI47_02610

Experiment: Ying_Nucleobase14 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_02605 and IAI47_02610 are separated by 56 nucleotidesIAI47_02610 and IAI47_02615 are separated by 164 nucleotides IAI47_02605: IAI47_02605 - protease modulator HflC, at 539,462 to 540,466 _02605 IAI47_02610: IAI47_02610 - DUF2065 domain-containing protein, at 540,523 to 540,723 _02610 IAI47_02615: IAI47_02615 - adenylosuccinate synthase, at 540,888 to 542,186 _02615 Position (kb) 540 541Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 539.647 kb on + strand, within IAI47_02605at 539.680 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.736 kb on - strand, within IAI47_02605at 539.736 kb on - strand, within IAI47_02605at 539.749 kb on + strand, within IAI47_02605at 539.749 kb on + strand, within IAI47_02605at 539.750 kb on - strand, within IAI47_02605at 539.750 kb on - strand, within IAI47_02605at 539.753 kb on - strand, within IAI47_02605at 539.768 kb on + strand, within IAI47_02605at 539.768 kb on + strand, within IAI47_02605at 539.769 kb on - strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.772 kb on - strand, within IAI47_02605at 539.772 kb on - strand, within IAI47_02605at 539.772 kb on - strand, within IAI47_02605at 539.824 kb on + strand, within IAI47_02605at 539.875 kb on + strand, within IAI47_02605at 540.006 kb on + strand, within IAI47_02605at 540.052 kb on + strand, within IAI47_02605at 540.052 kb on + strand, within IAI47_02605at 540.053 kb on - strand, within IAI47_02605at 540.063 kb on + strand, within IAI47_02605at 540.064 kb on - strand, within IAI47_02605at 540.064 kb on - strand, within IAI47_02605at 540.064 kb on - strand, within IAI47_02605at 540.064 kb on - strand, within IAI47_02605at 540.064 kb on - strand, within IAI47_02605at 540.067 kb on + strand, within IAI47_02605at 540.068 kb on - strand, within IAI47_02605at 540.068 kb on - strand, within IAI47_02605at 540.068 kb on - strand, within IAI47_02605at 540.068 kb on - strand, within IAI47_02605at 540.068 kb on - strand, within IAI47_02605at 540.139 kb on + strand, within IAI47_02605at 540.139 kb on + strand, within IAI47_02605at 540.139 kb on + strand, within IAI47_02605at 540.139 kb on + strand, within IAI47_02605at 540.139 kb on + strand, within IAI47_02605at 540.224 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.239 kb on - strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.272 kb on - strand, within IAI47_02605at 540.341 kb on + strand, within IAI47_02605at 540.341 kb on + strand, within IAI47_02605at 540.342 kb on - strand, within IAI47_02605at 540.355 kb on + strand, within IAI47_02605at 540.369 kb on - strandat 540.408 kb on + strandat 540.408 kb on + strandat 540.408 kb on + strandat 540.408 kb on + strandat 540.408 kb on + strandat 540.409 kb on - strandat 540.409 kb on - strandat 540.434 kb on + strandat 540.434 kb on + strandat 540.434 kb on + strandat 540.434 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.437 kb on - strandat 540.437 kb on - strandat 540.437 kb on - strandat 540.437 kb on - strandat 540.437 kb on - strandat 540.437 kb on - strandat 540.464 kb on + strandat 540.464 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.475 kb on - strandat 540.475 kb on - strandat 540.475 kb on - strandat 540.476 kb on + strandat 540.476 kb on + strandat 540.476 kb on + strandat 540.476 kb on + strandat 540.476 kb on + strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.483 kb on + strandat 540.557 kb on + strand, within IAI47_02610at 540.558 kb on - strand, within IAI47_02610at 540.558 kb on - strand, within IAI47_02610at 540.558 kb on - strand, within IAI47_02610at 540.558 kb on - strand, within IAI47_02610at 540.560 kb on + strand, within IAI47_02610at 540.560 kb on + strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.588 kb on + strand, within IAI47_02610at 540.588 kb on + strand, within IAI47_02610at 540.588 kb on + strand, within IAI47_02610at 540.589 kb on - strand, within IAI47_02610at 540.589 kb on - strand, within IAI47_02610at 540.589 kb on - strand, within IAI47_02610at 540.691 kb on + strand, within IAI47_02610at 540.691 kb on + strand, within IAI47_02610at 540.691 kb on + strand, within IAI47_02610at 540.691 kb on + strand, within IAI47_02610at 540.692 kb on - strand, within IAI47_02610at 540.692 kb on - strand, within IAI47_02610at 540.692 kb on - strand, within IAI47_02610at 540.692 kb on - strand, within IAI47_02610at 540.721 kb on + strandat 540.721 kb on + strandat 540.721 kb on + strandat 540.764 kb on + strandat 540.773 kb on + strandat 540.773 kb on + strandat 540.773 kb on + strandat 540.773 kb on + strandat 540.780 kb on + strandat 540.780 kb on + strandat 540.780 kb on + strandat 540.780 kb on + strandat 540.781 kb on - strandat 540.781 kb on - strandat 540.781 kb on - strandat 540.816 kb on + strandat 540.817 kb on - strandat 540.821 kb on + strandat 540.822 kb on - strandat 540.839 kb on + strandat 540.839 kb on + strandat 540.852 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2
remove
539,647 + IAI47_02605 0.18 +0.6
539,680 + IAI47_02605 0.22 +0.3
539,735 + IAI47_02605 0.27 -0.3
539,735 + IAI47_02605 0.27 +1.8
539,735 + IAI47_02605 0.27 +0.8
539,735 + IAI47_02605 0.27 -1.0
539,735 + IAI47_02605 0.27 -0.7
539,735 + IAI47_02605 0.27 +0.9
539,736 - IAI47_02605 0.27 +1.5
539,736 - IAI47_02605 0.27 +0.8
539,749 + IAI47_02605 0.29 +0.9
539,749 + IAI47_02605 0.29 +0.1
539,750 - IAI47_02605 0.29 +0.9
539,750 - IAI47_02605 0.29 -0.5
539,753 - IAI47_02605 0.29 +0.5
539,768 + IAI47_02605 0.30 +1.1
539,768 + IAI47_02605 0.30 -0.4
539,769 - IAI47_02605 0.31 +1.1
539,771 + IAI47_02605 0.31 +0.5
539,771 + IAI47_02605 0.31 +1.1
539,771 + IAI47_02605 0.31 +0.3
539,771 + IAI47_02605 0.31 +0.5
539,771 + IAI47_02605 0.31 +0.1
539,771 + IAI47_02605 0.31 +0.9
539,771 + IAI47_02605 0.31 +0.1
539,772 - IAI47_02605 0.31 +0.3
539,772 - IAI47_02605 0.31 +1.3
539,772 - IAI47_02605 0.31 +1.7
539,824 + IAI47_02605 0.36 +0.4
539,875 + IAI47_02605 0.41 +1.4
540,006 + IAI47_02605 0.54 -0.2
540,052 + IAI47_02605 0.59 -0.4
540,052 + IAI47_02605 0.59 +0.9
540,053 - IAI47_02605 0.59 -0.3
540,063 + IAI47_02605 0.60 +0.6
540,064 - IAI47_02605 0.60 +1.2
540,064 - IAI47_02605 0.60 +1.5
540,064 - IAI47_02605 0.60 +1.7
540,064 - IAI47_02605 0.60 +1.1
540,064 - IAI47_02605 0.60 -0.3
540,067 + IAI47_02605 0.60 +0.2
540,068 - IAI47_02605 0.60 -1.4
540,068 - IAI47_02605 0.60 +0.6
540,068 - IAI47_02605 0.60 +0.7
540,068 - IAI47_02605 0.60 +1.6
540,068 - IAI47_02605 0.60 +2.3
540,139 + IAI47_02605 0.67 +0.9
540,139 + IAI47_02605 0.67 +0.3
540,139 + IAI47_02605 0.67 -0.3
540,139 + IAI47_02605 0.67 +0.9
540,139 + IAI47_02605 0.67 +0.7
540,224 + IAI47_02605 0.76 -1.0
540,238 + IAI47_02605 0.77 +0.1
540,238 + IAI47_02605 0.77 +1.2
540,238 + IAI47_02605 0.77 -0.0
540,238 + IAI47_02605 0.77 +0.4
540,238 + IAI47_02605 0.77 -0.0
540,238 + IAI47_02605 0.77 +0.1
540,239 - IAI47_02605 0.77 +0.0
540,271 + IAI47_02605 0.80 +1.6
540,271 + IAI47_02605 0.80 +1.5
540,271 + IAI47_02605 0.80 +1.4
540,271 + IAI47_02605 0.80 +0.5
540,271 + IAI47_02605 0.80 -0.3
540,271 + IAI47_02605 0.80 -0.1
540,271 + IAI47_02605 0.80 +1.4
540,271 + IAI47_02605 0.80 +1.3
540,272 - IAI47_02605 0.81 +0.5
540,341 + IAI47_02605 0.87 +1.3
540,341 + IAI47_02605 0.87 +0.9
540,342 - IAI47_02605 0.88 +0.4
540,355 + IAI47_02605 0.89 +1.3
540,369 - +3.6
540,408 + -0.1
540,408 + -0.2
540,408 + +1.2
540,408 + +0.7
540,408 + +0.7
540,409 - +1.2
540,409 - +1.7
540,434 + +2.0
540,434 + -0.0
540,434 + -1.1
540,434 + +0.3
540,436 + +0.9
540,436 + +1.3
540,436 + +2.1
540,436 + +0.0
540,436 + -0.1
540,436 + +1.0
540,436 + +0.6
540,436 + -1.9
540,436 + -0.1
540,436 + +0.6
540,437 - +0.5
540,437 - +1.0
540,437 - +0.9
540,437 - +0.9
540,437 - +0.2
540,437 - +0.1
540,464 + +2.1
540,464 + -0.5
540,474 + +0.9
540,474 + -0.3
540,474 + +1.6
540,474 + -0.3
540,474 + +1.0
540,474 + +1.5
540,474 + +0.0
540,475 - +0.6
540,475 - -0.3
540,475 - +0.4
540,476 + -2.2
540,476 + -0.6
540,476 + -0.4
540,476 + -1.1
540,476 + -0.1
540,477 - +0.3
540,477 - +0.0
540,477 - -0.1
540,477 - -0.3
540,477 - +1.1
540,477 - +0.9
540,477 - +0.0
540,483 + -0.1
540,557 + IAI47_02610 0.17 -0.1
540,558 - IAI47_02610 0.17 -0.0
540,558 - IAI47_02610 0.17 -0.2
540,558 - IAI47_02610 0.17 -0.0
540,558 - IAI47_02610 0.17 -0.7
540,560 + IAI47_02610 0.18 +0.8
540,560 + IAI47_02610 0.18 -0.9
540,561 - IAI47_02610 0.19 +0.7
540,561 - IAI47_02610 0.19 +0.9
540,561 - IAI47_02610 0.19 +0.6
540,561 - IAI47_02610 0.19 +0.6
540,561 - IAI47_02610 0.19 +0.2
540,561 - IAI47_02610 0.19 -1.1
540,561 - IAI47_02610 0.19 -0.3
540,561 - IAI47_02610 0.19 -1.4
540,561 - IAI47_02610 0.19 +0.2
540,561 - IAI47_02610 0.19 -0.9
540,588 + IAI47_02610 0.32 -0.4
540,588 + IAI47_02610 0.32 +1.9
540,588 + IAI47_02610 0.32 -0.3
540,589 - IAI47_02610 0.33 +0.4
540,589 - IAI47_02610 0.33 +2.3
540,589 - IAI47_02610 0.33 +1.6
540,691 + IAI47_02610 0.84 -0.2
540,691 + IAI47_02610 0.84 -0.5
540,691 + IAI47_02610 0.84 +0.2
540,691 + IAI47_02610 0.84 -0.3
540,692 - IAI47_02610 0.84 -0.6
540,692 - IAI47_02610 0.84 -0.1
540,692 - IAI47_02610 0.84 +0.1
540,692 - IAI47_02610 0.84 +1.0
540,721 + +0.5
540,721 + +0.5
540,721 + +0.2
540,764 + -0.3
540,773 + -0.5
540,773 + +0.1
540,773 + +3.2
540,773 + -0.6
540,780 + -0.6
540,780 + +0.3
540,780 + -0.3
540,780 + +0.9
540,781 - -1.1
540,781 - -0.5
540,781 - +1.2
540,816 + -0.7
540,817 - -0.7
540,821 + -0.9
540,822 - -0.1
540,839 + -0.1
540,839 + -2.9
540,852 + -0.9

Or see this region's nucleotide sequence