Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00865 and IAI47_00870 are separated by 225 nucleotides IAI47_00870 and IAI47_00875 are separated by 80 nucleotides IAI47_00875 and IAI47_00880 are separated by 273 nucleotides
IAI47_00865: IAI47_00865 - primosomal protein N', at 181,527 to 183,722
_00865
IAI47_00870: IAI47_00870 - 50S ribosomal protein L31, at 183,948 to 184,163
_00870
IAI47_00875: IAI47_00875 - met regulon transcriptional regulator MetJ, at 184,244 to 184,561
_00875
IAI47_00880: IAI47_00880 - cystathionine gamma-synthase, at 184,835 to 185,995
_00880
Position (kb) 184
185 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 183.715 kb on - strand at 183.723 kb on - strand at 183.723 kb on - strand at 183.723 kb on - strand at 183.723 kb on - strand at 183.723 kb on - strand at 183.757 kb on + strand at 183.757 kb on + strand at 183.757 kb on + strand at 183.757 kb on + strand at 183.757 kb on + strand at 183.757 kb on + strand at 183.758 kb on - strand at 183.758 kb on - strand at 183.758 kb on - strand at 183.758 kb on - strand at 183.762 kb on + strand at 183.762 kb on + strand at 183.762 kb on + strand at 183.762 kb on + strand at 183.762 kb on + strand at 183.763 kb on - strand at 183.763 kb on - strand at 183.763 kb on - strand at 183.763 kb on - strand at 183.786 kb on - strand at 183.862 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.871 kb on + strand at 183.871 kb on + strand at 183.871 kb on + strand at 184.127 kb on + strand, within IAI47_00870 at 184.128 kb on - strand, within IAI47_00870 at 184.161 kb on + strand at 184.161 kb on + strand at 184.167 kb on + strand at 184.167 kb on + strand at 184.167 kb on + strand at 184.167 kb on + strand at 184.168 kb on - strand at 184.168 kb on - strand at 184.269 kb on - strand at 184.276 kb on + strand, within IAI47_00875 at 184.328 kb on - strand, within IAI47_00875 at 184.478 kb on - strand, within IAI47_00875 at 184.478 kb on - strand, within IAI47_00875 at 184.538 kb on - strand at 184.539 kb on + strand at 184.540 kb on - strand at 184.567 kb on - strand at 184.571 kb on + strand at 184.571 kb on + strand at 184.575 kb on + strand at 184.575 kb on + strand at 184.586 kb on - strand at 184.586 kb on - strand at 184.608 kb on + strand at 184.609 kb on - strand at 184.609 kb on - strand at 184.640 kb on - strand at 184.640 kb on - strand at 184.703 kb on - strand at 184.703 kb on - strand at 184.715 kb on + strand at 184.715 kb on + strand at 184.715 kb on + strand at 184.737 kb on + strand at 184.751 kb on + strand at 184.751 kb on + strand at 184.751 kb on + strand at 184.752 kb on - strand at 184.765 kb on + strand at 184.766 kb on - strand at 184.766 kb on - strand at 184.766 kb on - strand at 184.766 kb on - strand at 184.776 kb on - strand at 184.776 kb on - strand at 184.802 kb on - strand at 184.802 kb on - strand at 184.802 kb on - strand at 184.802 kb on - strand at 184.844 kb on - strand at 184.892 kb on + strand at 184.892 kb on + strand at 184.892 kb on + strand at 184.893 kb on - strand at 184.893 kb on - strand at 184.893 kb on - strand at 184.893 kb on - strand at 184.924 kb on + strand at 184.924 kb on + strand at 184.924 kb on + strand at 184.924 kb on + strand at 184.924 kb on + strand at 184.925 kb on - strand at 184.925 kb on - strand at 184.925 kb on - strand at 184.925 kb on - strand at 184.925 kb on - strand at 184.925 kb on - strand at 184.931 kb on + strand at 184.931 kb on + strand at 184.932 kb on - strand at 184.949 kb on - strand at 184.970 kb on + strand, within IAI47_00880 at 184.971 kb on - strand, within IAI47_00880 at 184.971 kb on - strand, within IAI47_00880 at 184.971 kb on - strand, within IAI47_00880 at 184.971 kb on - strand, within IAI47_00880 at 184.971 kb on - strand, within IAI47_00880 at 184.971 kb on - strand, within IAI47_00880 at 185.004 kb on + strand, within IAI47_00880 at 185.004 kb on + strand, within IAI47_00880 at 185.005 kb on - strand, within IAI47_00880 at 185.005 kb on - strand, within IAI47_00880 at 185.005 kb on - strand, within IAI47_00880 at 185.012 kb on - strand, within IAI47_00880 at 185.012 kb on - strand, within IAI47_00880 at 185.012 kb on - strand, within IAI47_00880 at 185.012 kb on - strand, within IAI47_00880 at 185.046 kb on + strand, within IAI47_00880 at 185.046 kb on + strand, within IAI47_00880 at 185.046 kb on + strand, within IAI47_00880 at 185.049 kb on + strand, within IAI47_00880 at 185.049 kb on + strand, within IAI47_00880 at 185.049 kb on + strand, within IAI47_00880 at 185.135 kb on + strand, within IAI47_00880 at 185.147 kb on + strand, within IAI47_00880 at 185.148 kb on - strand, within IAI47_00880 at 185.148 kb on - strand, within IAI47_00880 at 185.184 kb on - strand, within IAI47_00880 at 185.293 kb on - strand, within IAI47_00880 at 185.293 kb on - strand, within IAI47_00880 at 185.300 kb on - strand, within IAI47_00880 at 185.338 kb on + strand, within IAI47_00880 at 185.338 kb on + strand, within IAI47_00880 at 185.338 kb on + strand, within IAI47_00880 at 185.338 kb on + strand, within IAI47_00880 at 185.339 kb on - strand, within IAI47_00880 at 185.339 kb on - strand, within IAI47_00880 at 185.362 kb on + strand, within IAI47_00880 at 185.362 kb on + strand, within IAI47_00880 at 185.362 kb on + strand, within IAI47_00880 at 185.362 kb on + strand, within IAI47_00880 at 185.362 kb on + strand, within IAI47_00880 at 185.362 kb on + strand, within IAI47_00880 at 185.362 kb on + strand, within IAI47_00880 at 185.363 kb on - strand, within IAI47_00880 at 185.363 kb on - strand, within IAI47_00880 at 185.363 kb on - strand, within IAI47_00880 at 185.363 kb on - strand, within IAI47_00880 at 185.422 kb on + strand, within IAI47_00880 at 185.429 kb on + strand, within IAI47_00880 at 185.429 kb on + strand, within IAI47_00880 at 185.429 kb on + strand, within IAI47_00880 at 185.429 kb on + strand, within IAI47_00880 at 185.430 kb on - strand, within IAI47_00880 at 185.430 kb on - strand, within IAI47_00880 at 185.430 kb on - strand, within IAI47_00880 at 185.454 kb on + strand, within IAI47_00880 at 185.515 kb on + strand, within IAI47_00880 at 185.515 kb on + strand, within IAI47_00880 at 185.515 kb on + strand, within IAI47_00880 at 185.516 kb on - strand, within IAI47_00880 at 185.518 kb on + strand, within IAI47_00880 at 185.518 kb on + strand, within IAI47_00880 at 185.519 kb on - strand, within IAI47_00880 at 185.519 kb on - strand, within IAI47_00880 at 185.519 kb on - strand, within IAI47_00880 at 185.519 kb on - strand, within IAI47_00880 at 185.519 kb on - strand, within IAI47_00880 at 185.519 kb on - strand, within IAI47_00880 at 185.519 kb on - strand, within IAI47_00880 at 185.526 kb on + strand, within IAI47_00880 at 185.527 kb on - strand, within IAI47_00880 at 185.527 kb on - strand, within IAI47_00880 at 185.549 kb on + strand, within IAI47_00880 at 185.549 kb on + strand, within IAI47_00880 at 185.549 kb on + strand, within IAI47_00880 at 185.549 kb on + strand, within IAI47_00880 at 185.549 kb on + strand, within IAI47_00880 at 185.549 kb on + strand, within IAI47_00880 at 185.550 kb on - strand, within IAI47_00880 at 185.550 kb on - strand, within IAI47_00880 at 185.550 kb on - strand, within IAI47_00880
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 183,715 - -0.8 183,723 - -0.8 183,723 - +0.1 183,723 - -0.1 183,723 - +0.7 183,723 - +1.9 183,757 + +0.9 183,757 + +1.2 183,757 + +0.9 183,757 + +0.2 183,757 + -0.2 183,757 + +0.2 183,758 - +0.4 183,758 - -0.6 183,758 - +1.5 183,758 - -1.0 183,762 + +0.3 183,762 + -0.7 183,762 + -0.0 183,762 + -1.6 183,762 + -1.1 183,763 - +2.2 183,763 - +1.4 183,763 - +0.0 183,763 - +0.7 183,786 - +1.8 183,862 + -0.1 183,869 + -0.5 183,869 + -1.7 183,869 + -0.1 183,869 + +0.6 183,869 + -0.7 183,869 + -0.7 183,869 + -0.1 183,869 + -1.5 183,869 + -1.1 183,869 + +0.1 183,869 + +0.2 183,869 + +3.2 183,869 + +0.3 183,869 + -2.3 183,869 + -1.2 183,869 + -0.1 183,869 + -1.1 183,871 + +0.5 183,871 + +0.2 183,871 + +0.1 184,127 + IAI47_00870 0.83 -0.8 184,128 - IAI47_00870 0.83 -0.4 184,161 + +1.2 184,161 + +1.2 184,167 + -0.9 184,167 + +0.8 184,167 + +0.2 184,167 + -0.1 184,168 - -0.9 184,168 - -0.4 184,269 - -0.9 184,276 + IAI47_00875 0.10 -1.7 184,328 - IAI47_00875 0.26 -2.1 184,478 - IAI47_00875 0.74 +0.9 184,478 - IAI47_00875 0.74 -1.1 184,538 - -1.1 184,539 + -0.1 184,540 - -1.6 184,567 - -0.1 184,571 + +1.9 184,571 + +0.3 184,575 + -3.3 184,575 + -2.3 184,586 - +1.5 184,586 - -0.2 184,608 + -0.1 184,609 - -0.3 184,609 - -0.1 184,640 - -0.1 184,640 - -0.7 184,703 - -1.7 184,703 - +0.1 184,715 + -2.6 184,715 + -1.4 184,715 + -1.4 184,737 + -1.4 184,751 + -1.6 184,751 + -1.7 184,751 + +0.5 184,752 - -0.7 184,765 + +0.6 184,766 - -0.8 184,766 - -0.5 184,766 - -0.1 184,766 - -1.1 184,776 - -1.9 184,776 - -1.7 184,802 - -3.4 184,802 - -1.8 184,802 - -1.4 184,802 - -2.4 184,844 - -1.7 184,892 + -3.2 184,892 + -1.4 184,892 + -1.7 184,893 - -4.4 184,893 - +0.9 184,893 - -3.9 184,893 - -3.7 184,924 + -1.7 184,924 + -1.9 184,924 + -2.3 184,924 + -5.2 184,924 + -3.2 184,925 - -3.3 184,925 - -1.7 184,925 - -1.6 184,925 - -2.1 184,925 - -2.7 184,925 - -2.1 184,931 + -3.3 184,931 + -2.3 184,932 - -2.3 184,949 - -1.9 184,970 + IAI47_00880 0.12 -3.3 184,971 - IAI47_00880 0.12 -1.4 184,971 - IAI47_00880 0.12 -3.1 184,971 - IAI47_00880 0.12 -2.1 184,971 - IAI47_00880 0.12 -0.7 184,971 - IAI47_00880 0.12 -1.1 184,971 - IAI47_00880 0.12 -0.7 185,004 + IAI47_00880 0.15 -2.9 185,004 + IAI47_00880 0.15 -3.4 185,005 - IAI47_00880 0.15 -1.7 185,005 - IAI47_00880 0.15 -1.7 185,005 - IAI47_00880 0.15 -1.4 185,012 - IAI47_00880 0.15 -2.3 185,012 - IAI47_00880 0.15 -2.9 185,012 - IAI47_00880 0.15 -3.9 185,012 - IAI47_00880 0.15 -0.7 185,046 + IAI47_00880 0.18 -1.9 185,046 + IAI47_00880 0.18 -2.8 185,046 + IAI47_00880 0.18 -0.7 185,049 + IAI47_00880 0.18 -1.7 185,049 + IAI47_00880 0.18 -3.3 185,049 + IAI47_00880 0.18 -1.4 185,135 + IAI47_00880 0.26 -2.8 185,147 + IAI47_00880 0.27 -1.7 185,148 - IAI47_00880 0.27 -3.3 185,148 - IAI47_00880 0.27 -3.7 185,184 - IAI47_00880 0.30 -4.7 185,293 - IAI47_00880 0.39 -1.7 185,293 - IAI47_00880 0.39 -2.3 185,300 - IAI47_00880 0.40 -2.3 185,338 + IAI47_00880 0.43 -1.7 185,338 + IAI47_00880 0.43 +0.9 185,338 + IAI47_00880 0.43 -2.3 185,338 + IAI47_00880 0.43 -3.1 185,339 - IAI47_00880 0.43 -1.1 185,339 - IAI47_00880 0.43 -3.1 185,362 + IAI47_00880 0.45 -1.4 185,362 + IAI47_00880 0.45 -3.1 185,362 + IAI47_00880 0.45 -2.4 185,362 + IAI47_00880 0.45 -3.7 185,362 + IAI47_00880 0.45 -3.4 185,362 + IAI47_00880 0.45 +0.9 185,362 + IAI47_00880 0.45 -1.7 185,363 - IAI47_00880 0.45 -4.2 185,363 - IAI47_00880 0.45 -1.9 185,363 - IAI47_00880 0.45 -0.7 185,363 - IAI47_00880 0.45 -2.1 185,422 + IAI47_00880 0.51 -3.3 185,429 + IAI47_00880 0.51 -3.6 185,429 + IAI47_00880 0.51 -3.5 185,429 + IAI47_00880 0.51 -1.7 185,429 + IAI47_00880 0.51 -2.6 185,430 - IAI47_00880 0.51 -1.4 185,430 - IAI47_00880 0.51 -2.7 185,430 - IAI47_00880 0.51 -3.7 185,454 + IAI47_00880 0.53 -1.4 185,515 + IAI47_00880 0.59 -3.6 185,515 + IAI47_00880 0.59 -2.4 185,515 + IAI47_00880 0.59 -2.3 185,516 - IAI47_00880 0.59 -2.3 185,518 + IAI47_00880 0.59 -1.7 185,518 + IAI47_00880 0.59 -1.9 185,519 - IAI47_00880 0.59 -1.4 185,519 - IAI47_00880 0.59 -2.1 185,519 - IAI47_00880 0.59 -4.0 185,519 - IAI47_00880 0.59 -4.6 185,519 - IAI47_00880 0.59 -1.6 185,519 - IAI47_00880 0.59 -2.9 185,519 - IAI47_00880 0.59 -3.8 185,526 + IAI47_00880 0.60 -3.4 185,527 - IAI47_00880 0.60 -3.1 185,527 - IAI47_00880 0.60 -3.0 185,549 + IAI47_00880 0.61 -0.7 185,549 + IAI47_00880 0.61 -2.4 185,549 + IAI47_00880 0.61 -1.7 185,549 + IAI47_00880 0.61 -1.9 185,549 + IAI47_00880 0.61 -3.0 185,549 + IAI47_00880 0.61 -2.7 185,550 - IAI47_00880 0.62 -1.9 185,550 - IAI47_00880 0.62 -3.7 185,550 - IAI47_00880 0.62 -1.7
Or see this region's nucleotide sequence