Strain Fitness in Pantoea sp. MT58 around IAI47_17915

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
3,803,477	-				-1.8
3,803,477	-				+0.7
3,803,518	-				+0.3
3,803,607	-		IAI47_17910	0.21	-0.3
3,803,607	-		IAI47_17910	0.21	+0.3
3,803,623	+		IAI47_17910	0.24	+0.1
3,803,659	-		IAI47_17910	0.31	-0.2
3,803,659	-		IAI47_17910	0.31	+1.0
3,803,717	-		IAI47_17910	0.42	+1.7
3,803,717	-		IAI47_17910	0.42	-0.1
3,803,846	-		IAI47_17910	0.67	+0.6
3,803,987	+				-1.1
3,803,988	-				+1.2
3,803,988	-				+0.4
3,803,991	-				+0.7
3,803,991	-				-0.0
3,803,991	-				-0.2
3,803,991	-				-1.3
3,803,991	-				+0.6
3,803,991	-				-0.0
3,803,991	-				+0.3
3,803,991	-				+0.9
3,804,014	-				-0.8
3,804,014	-				+0.3
3,804,014	-				+0.2
3,804,014	-				+0.0
3,804,014	-				+0.1
3,804,014	-				-0.0
3,804,014	-				+1.7
3,804,014	-				-1.5
3,804,014	-				-0.5
3,804,014	-				+0.9
3,804,014	-				-1.4
3,804,014	-				+1.4
3,804,014	-				-0.4
3,804,014	-				-0.0
3,804,014	-				+0.7
3,804,044	-				+0.5
3,804,048	+				-1.2
3,804,101	+				+0.2
3,804,101	+				+0.7
3,804,102	-				-0.7
3,804,170	+		IAI47_17915	0.17	+0.8
3,804,170	+		IAI47_17915	0.17	-0.5
3,804,170	+		IAI47_17915	0.17	+1.1
3,804,171	-		IAI47_17915	0.17	+0.5
3,804,171	-		IAI47_17915	0.17	+0.3
3,804,171	-		IAI47_17915	0.17	-0.1
3,804,171	-		IAI47_17915	0.17	-0.3
3,804,195	+		IAI47_17915	0.23	+2.3
3,804,196	-		IAI47_17915	0.23	+0.8
3,804,239	+		IAI47_17915	0.34	+1.0
3,804,239	+		IAI47_17915	0.34	+0.0
3,804,239	+		IAI47_17915	0.34	+3.0
3,804,239	+		IAI47_17915	0.34	+0.7
3,804,240	-		IAI47_17915	0.34	+1.3
3,804,240	-		IAI47_17915	0.34	+0.7
3,804,248	+		IAI47_17915	0.36	+0.7
3,804,281	+		IAI47_17915	0.44	+2.2
3,804,285	+		IAI47_17915	0.45	+0.0
3,804,285	+		IAI47_17915	0.45	-0.7
3,804,320	+		IAI47_17915	0.54	+0.3
3,804,320	+		IAI47_17915	0.54	-0.9
3,804,320	+		IAI47_17915	0.54	+1.3
3,804,320	+		IAI47_17915	0.54	-0.2
3,804,320	+		IAI47_17915	0.54	+1.0
3,804,321	-		IAI47_17915	0.54	-0.2
3,804,321	-		IAI47_17915	0.54	+0.5
3,804,347	+		IAI47_17915	0.60	+0.4
3,804,409	+		IAI47_17915	0.75	+0.3
3,804,410	-		IAI47_17915	0.75	+1.7
3,804,426	+		IAI47_17915	0.79	-0.2
3,804,443	-		IAI47_17915	0.83	+0.4
3,804,469	+		IAI47_17915	0.90	+1.7
3,804,470	-				-0.3
3,804,521	+				+0.2
3,804,521	+				-0.0
3,804,532	+				-0.1
3,804,532	+				-2.1
3,804,532	+				+0.7
3,804,532	+				+0.7
3,804,533	-				+0.1
3,804,533	-				+1.0
3,804,533	-				-0.1
3,804,533	-				-0.3
3,804,533	-				+0.1
3,804,533	-				-0.5
3,804,533	-				-0.2
3,804,533	-				-0.3
3,804,533	-				-0.9
3,804,533	-				+1.0
3,804,536	-				-0.5
3,804,574	-				+1.5
3,804,612	-				+0.1
3,804,620	+				-0.4
3,804,620	+				+0.1
3,804,621	-				-1.3
3,804,744	+		IAI47_17920	0.23	+0.4
3,804,744	+		IAI47_17920	0.23	+0.2
3,804,750	+		IAI47_17920	0.24	-0.1
3,804,751	-		IAI47_17920	0.24	-1.0
3,804,767	+		IAI47_17920	0.26	-0.6
3,804,775	-		IAI47_17920	0.28	-0.9
3,804,779	+		IAI47_17920	0.28	+0.3
3,804,791	+		IAI47_17920	0.30	-0.1
3,804,791	+		IAI47_17920	0.30	+0.4
3,804,791	+		IAI47_17920	0.30	-0.9
3,804,791	+		IAI47_17920	0.30	-0.1
3,804,792	-		IAI47_17920	0.30	-1.8
3,804,792	-		IAI47_17920	0.30	-0.5
3,804,792	-		IAI47_17920	0.30	-0.1
3,804,792	-		IAI47_17920	0.30	+0.2
3,804,857	+		IAI47_17920	0.39	+0.9
3,804,858	-		IAI47_17920	0.39	+0.5
3,804,858	-		IAI47_17920	0.39	-0.1
3,804,869	+		IAI47_17920	0.41	+0.4
3,804,869	+		IAI47_17920	0.41	-0.1
3,804,869	+		IAI47_17920	0.41	+0.5
3,804,869	+		IAI47_17920	0.41	-0.1
3,804,869	+		IAI47_17920	0.41	+0.7
3,804,869	+		IAI47_17920	0.41	+1.0
3,804,869	+		IAI47_17920	0.41	-0.2
3,804,869	+		IAI47_17920	0.41	-0.3
3,804,870	-		IAI47_17920	0.41	+0.1
3,804,870	-		IAI47_17920	0.41	-1.6
3,804,870	-		IAI47_17920	0.41	+0.0
3,804,870	-		IAI47_17920	0.41	-1.3
3,804,870	-		IAI47_17920	0.41	-0.0
3,804,907	+		IAI47_17920	0.46	-1.8
3,804,907	+		IAI47_17920	0.46	+1.0
3,804,907	+		IAI47_17920	0.46	+0.3
3,804,908	-		IAI47_17920	0.46	-0.2
3,804,908	-		IAI47_17920	0.46	+0.8
3,805,058	+		IAI47_17920	0.68	+1.5
3,805,058	+		IAI47_17920	0.68	+0.4
3,805,058	+		IAI47_17920	0.68	+0.7
3,805,058	+		IAI47_17920	0.68	+0.1
3,805,058	+		IAI47_17920	0.68	-0.2
3,805,058	+		IAI47_17920	0.68	+2.0
3,805,106	+		IAI47_17920	0.74	+0.7
3,805,107	-		IAI47_17920	0.74	-0.7
3,805,107	-		IAI47_17920	0.74	+0.2
3,805,107	-		IAI47_17920	0.74	-0.1
3,805,153	-		IAI47_17920	0.81	+1.3
3,805,180	+		IAI47_17920	0.85	-0.8
3,805,293	+				+0.1
3,805,293	+				-0.9
3,805,293	+				-1.1
3,805,294	-				-0.9
3,805,294	-				+0.3
3,805,294	-				-0.3
3,805,294	-				+0.6
3,805,323	+				-1.0
3,805,324	-				+0.3
3,805,324	-				+0.6
3,805,334	+				-0.7
3,805,334	+				+1.6
3,805,335	-				+0.1
3,805,335	-				+0.0
3,805,335	-				-1.1
3,805,405	+				+0.1
3,805,405	+				-1.0
3,805,406	-				-0.1
3,805,406	-				+1.0
3,805,416	+				-2.1
3,805,416	+				+1.2
3,805,416	+				-1.0
3,805,416	+				-0.3
3,805,416	+				+0.3
3,805,416	+				+1.3
3,805,416	+				+0.0
3,805,416	+				-0.3
3,805,416	+				-0.2
3,805,416	+				-0.4
3,805,417	-				-0.0
3,805,417	-				+1.4
3,805,417	-				-0.3
3,805,418	+				-0.3
3,805,418	+				-0.1
3,805,418	+				-0.6
3,805,418	+				-0.0
3,805,418	+				+0.5
3,805,418	+				-1.5
3,805,418	+				+1.0
3,805,418	+				+2.3
3,805,419	-				+0.4
3,805,419	-				+0.2
3,805,419	-				+0.0
3,805,419	-				+2.6
3,805,419	-				+0.4
3,805,419	-				+0.4
3,805,427	+				+0.7
3,805,427	+				+0.3
3,805,427	+				-0.5
3,805,427	+				+2.6
3,805,427	+				-0.6
3,805,427	+				-1.1
3,805,427	+				-0.9
3,805,427	+				-0.3
3,805,428	-				-0.7
3,805,428	-				+1.2
3,805,428	-				+0.2
3,805,428	-				+0.1
3,805,453	-				-0.0
3,805,475	+				+0.7
3,805,475	+				+1.2
3,805,475	+				-0.1
3,805,475	+				-0.5
3,805,476	-				+0.2
3,805,476	-				-1.0
3,805,476	-				-0.3
3,805,476	-				-1.0
3,805,476	-				-0.2
3,805,476	-				+0.4
3,805,476	-				+1.7
3,805,476	-				-0.8
3,805,506	-				-0.3