Strain Fitness in Pantoea sp. MT58 around IAI47_16355

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
3,467,448	+				-3.8
3,467,448	+				-2.6
3,467,448	+				+1.7
3,467,448	+				-2.5
3,467,448	+				-2.9
3,467,449	-				-2.3
3,467,449	-				-1.9
3,467,449	-				-3.8
3,467,449	-				-1.6
3,467,454	+		IAI47_16350	0.10	-0.9
3,467,454	+		IAI47_16350	0.10	-1.3
3,467,454	+		IAI47_16350	0.10	-0.3
3,467,455	-		IAI47_16350	0.10	-3.5
3,467,455	-		IAI47_16350	0.10	-2.5
3,467,455	-		IAI47_16350	0.10	-4.1
3,467,547	+		IAI47_16350	0.20	-3.2
3,467,547	+		IAI47_16350	0.20	-2.6
3,467,548	-		IAI47_16350	0.20	-2.5
3,467,585	+		IAI47_16350	0.24	-3.1
3,467,585	+		IAI47_16350	0.24	-1.6
3,467,585	+		IAI47_16350	0.24	-2.9
3,467,586	-		IAI47_16350	0.24	-3.4
3,467,586	-		IAI47_16350	0.24	-2.3
3,467,586	-		IAI47_16350	0.24	-3.3
3,467,586	-		IAI47_16350	0.24	-3.2
3,467,586	-		IAI47_16350	0.24	-3.1
3,467,586	-		IAI47_16350	0.24	-0.9
3,467,586	-		IAI47_16350	0.24	-1.6
3,467,586	-		IAI47_16350	0.24	-2.8
3,467,690	+		IAI47_16350	0.34	-3.8
3,467,690	+		IAI47_16350	0.34	-2.5
3,467,699	+		IAI47_16350	0.35	-2.1
3,467,702	+		IAI47_16350	0.36	-2.5
3,467,702	+		IAI47_16350	0.36	-3.0
3,467,702	+		IAI47_16350	0.36	-3.5
3,467,702	+		IAI47_16350	0.36	-2.9
3,467,702	+		IAI47_16350	0.36	-0.3
3,467,703	-		IAI47_16350	0.36	-4.7
3,467,703	-		IAI47_16350	0.36	-2.1
3,467,703	-		IAI47_16350	0.36	-0.9
3,467,703	-		IAI47_16350	0.36	-3.2
3,467,706	+		IAI47_16350	0.36	-3.3
3,467,706	+		IAI47_16350	0.36	-0.9
3,467,706	+		IAI47_16350	0.36	-1.6
3,467,707	-		IAI47_16350	0.36	-3.2
3,467,725	-		IAI47_16350	0.38	-3.8
3,467,782	+		IAI47_16350	0.44	-1.9
3,467,782	+		IAI47_16350	0.44	-0.3
3,467,783	-		IAI47_16350	0.44	-2.6
3,467,800	+		IAI47_16350	0.46	-2.1
3,467,800	+		IAI47_16350	0.46	-1.9
3,467,800	+		IAI47_16350	0.46	-2.5
3,467,801	-		IAI47_16350	0.46	-2.3
3,467,801	-		IAI47_16350	0.46	-0.9
3,467,814	+		IAI47_16350	0.47	-3.1
3,468,011	+		IAI47_16350	0.67	-2.1
3,468,107	+		IAI47_16350	0.77	-1.6
3,468,164	+		IAI47_16350	0.83	-2.1
3,468,200	+		IAI47_16350	0.87	-2.6
3,468,200	+		IAI47_16350	0.87	-2.8
3,468,200	+		IAI47_16350	0.87	-2.8
3,468,201	-		IAI47_16350	0.87	-2.6
3,468,201	-		IAI47_16350	0.87	-3.5
3,468,231	-		IAI47_16350	0.90	-3.1
3,468,342	+				-2.1
3,468,369	+				-5.1
3,468,369	+				-3.9
3,468,370	-				+0.4
3,468,370	-				+0.5
3,468,397	+				-0.2
3,468,397	+				-1.4
3,468,397	+				+0.3
3,468,397	+				-1.2
3,468,397	+				-0.1
3,468,397	+				-0.6
3,468,397	+				+0.7
3,468,397	+				+0.4
3,468,397	+				-0.8
3,468,397	+				-0.6
3,468,397	+				+1.7
3,468,397	+				-0.6
3,468,398	-				+0.1
3,468,398	-				+0.1
3,468,398	-				+0.7
3,468,398	-				-0.4
3,468,398	-				+1.0
3,468,398	-				-0.6
3,468,398	-				-0.3
3,468,398	-				-0.4
3,468,421	+				-0.3
3,468,421	+				+0.9
3,468,421	+				+1.1
3,468,421	+				+0.9
3,468,421	+				+0.4
3,468,422	-				+1.0
3,468,436	+				-0.3
3,468,437	-				-0.3
3,468,437	-				-0.4
3,468,443	+				-1.0
3,468,443	+				-0.5
3,468,443	+				+1.3
3,468,466	+				-0.4
3,468,467	-				+0.4
3,468,587	+		IAI47_16355	0.23	+1.2
3,468,587	+		IAI47_16355	0.23	-0.5
3,468,587	+		IAI47_16355	0.23	+0.1
3,468,587	+		IAI47_16355	0.23	+1.7
3,468,587	+		IAI47_16355	0.23	+0.7
3,468,587	+		IAI47_16355	0.23	+0.7
3,468,587	+		IAI47_16355	0.23	-1.5
3,468,587	+		IAI47_16355	0.23	-1.0
3,468,587	+		IAI47_16355	0.23	+0.3
3,468,587	+		IAI47_16355	0.23	-0.2
3,468,587	+		IAI47_16355	0.23	-0.3
3,468,587	+		IAI47_16355	0.23	-0.4
3,468,587	+		IAI47_16355	0.23	+0.5
3,468,587	+		IAI47_16355	0.23	+0.5
3,468,587	+		IAI47_16355	0.23	+0.3
3,468,587	+		IAI47_16355	0.23	-0.5
3,468,587	+		IAI47_16355	0.23	-0.3
3,468,588	-		IAI47_16355	0.23	+0.4
3,468,588	-		IAI47_16355	0.23	-1.1
3,468,588	-		IAI47_16355	0.23	-0.6
3,468,588	-		IAI47_16355	0.23	-1.5
3,468,588	-		IAI47_16355	0.23	-0.3
3,468,588	-		IAI47_16355	0.23	+0.2
3,468,588	-		IAI47_16355	0.23	-2.6
3,468,588	-		IAI47_16355	0.23	-0.5
3,468,611	+		IAI47_16355	0.27	-0.3
3,468,617	+		IAI47_16355	0.27	+0.1
3,468,617	+		IAI47_16355	0.27	+0.1
3,468,618	-		IAI47_16355	0.28	+0.7
3,468,658	+		IAI47_16355	0.34	+0.4
3,468,658	+		IAI47_16355	0.34	+0.9
3,468,658	+		IAI47_16355	0.34	+0.2
3,468,658	+		IAI47_16355	0.34	-2.3
3,468,659	-		IAI47_16355	0.34	+0.0
3,468,659	-		IAI47_16355	0.34	-0.0
3,468,659	-		IAI47_16355	0.34	-1.9
3,468,671	+		IAI47_16355	0.36	-0.8
3,468,687	-		IAI47_16355	0.38	-0.6
3,468,696	-		IAI47_16355	0.40	-0.2
3,468,696	-		IAI47_16355	0.40	-0.5
3,468,696	-		IAI47_16355	0.40	-0.1
3,468,714	+		IAI47_16355	0.42	+0.1
3,468,714	+		IAI47_16355	0.42	-2.0
3,468,714	+		IAI47_16355	0.42	+0.5
3,468,715	-		IAI47_16355	0.43	+0.7
3,468,715	-		IAI47_16355	0.43	-0.2
3,468,755	+		IAI47_16355	0.49	-1.0
3,468,755	+		IAI47_16355	0.49	+0.6
3,468,756	-		IAI47_16355	0.49	+1.3
3,468,759	-		IAI47_16355	0.49	+2.3
3,468,759	-		IAI47_16355	0.49	+0.7
3,468,804	+		IAI47_16355	0.56	+1.0
3,468,805	-		IAI47_16355	0.56	-0.1
3,468,805	-		IAI47_16355	0.56	-0.3
3,468,879	-		IAI47_16355	0.68	-0.3
3,468,914	+		IAI47_16355	0.73	+0.7
3,468,926	+		IAI47_16355	0.75	+0.9
3,468,926	+		IAI47_16355	0.75	-0.5
3,468,926	+		IAI47_16355	0.75	-0.8
3,468,926	+		IAI47_16355	0.75	-0.3
3,468,926	+		IAI47_16355	0.75	-0.4
3,468,927	-		IAI47_16355	0.75	+1.0
3,468,927	-		IAI47_16355	0.75	+1.0
3,468,927	-		IAI47_16355	0.75	-0.3
3,468,968	+		IAI47_16355	0.81	+0.5
3,468,968	+		IAI47_16355	0.81	+0.0
3,468,968	+		IAI47_16355	0.81	+0.9
3,468,968	+		IAI47_16355	0.81	+0.6
3,468,969	-		IAI47_16355	0.82	+0.7
3,468,969	-		IAI47_16355	0.82	+0.0
3,468,969	-		IAI47_16355	0.82	+0.9
3,469,086	+				-0.6
3,469,086	+				-1.3
3,469,105	-				-0.0
3,469,110	+				+0.4
3,469,111	-				+0.4
3,469,218	+				-0.5
3,469,218	+				-0.1
3,469,219	-				-0.2
3,469,295	+				+0.7
3,469,296	-				-1.3
3,469,296	-				-0.5
3,469,296	-				+0.3
3,469,303	+				-0.3
3,469,304	-				+0.7
3,469,304	-				+0.4
3,469,371	+				+1.3
3,469,371	+				+0.2
3,469,371	+				-0.0
3,469,371	+				-0.6
3,469,371	+				-2.3
3,469,372	-				-0.9
3,469,372	-				+0.1
3,469,372	-				+1.7
3,469,372	-				-1.0
3,469,372	-				+1.7
3,469,372	-				-0.5
3,469,374	+				-1.0
3,469,375	-				+0.9
3,469,468	+				-0.7
3,469,468	+				-0.8
3,469,468	+				-0.3
3,469,468	+				-0.9
3,469,468	+				-0.6
3,469,468	+				+0.6
3,469,468	+				-0.1
3,469,468	+				+0.3
3,469,468	+				-0.2
3,469,468	+				-0.7
3,469,469	-				+0.2
3,469,469	-				-1.5
3,469,469	-				+1.3
3,469,469	-				-1.6
3,469,469	-				-0.3
3,469,469	-				+1.0
3,469,469	-				+0.6
3,469,469	-				-0.1
3,469,540	+		IAI47_16360	0.19	+0.3
3,469,540	+		IAI47_16360	0.19	+0.5
3,469,540	+		IAI47_16360	0.19	+1.4
3,469,541	-		IAI47_16360	0.19	+0.7
3,469,541	-		IAI47_16360	0.19	+0.4
3,469,677	+		IAI47_16360	0.39	+0.1
3,469,677	+		IAI47_16360	0.39	-0.4
3,469,677	+		IAI47_16360	0.39	-0.5
3,469,678	-		IAI47_16360	0.40	-0.1
3,469,678	-		IAI47_16360	0.40	-0.3
3,469,678	-		IAI47_16360	0.40	-3.0
3,469,678	-		IAI47_16360	0.40	+0.1
3,469,751	+		IAI47_16360	0.50	-0.0
3,469,751	+		IAI47_16360	0.50	+1.7
3,469,751	+		IAI47_16360	0.50	+1.7
3,469,752	-		IAI47_16360	0.50	-0.0
3,469,752	-		IAI47_16360	0.50	-0.4
3,469,752	-		IAI47_16360	0.50	-0.6
3,469,902	-		IAI47_16360	0.72	-0.7
3,469,926	+		IAI47_16360	0.76	-0.0
3,469,959	+		IAI47_16360	0.81	-0.5
3,469,968	+		IAI47_16360	0.82	+1.2
3,469,969	-		IAI47_16360	0.82	-0.3
3,469,995	+		IAI47_16360	0.86	-0.9
3,469,995	+		IAI47_16360	0.86	+1.5
3,470,025	+				+1.2
3,470,026	-				-0.2
3,470,026	-				+0.0
3,470,026	-				-0.4
3,470,026	-				+0.2
3,470,026	-				+0.1
3,470,047	+				+0.3
3,470,080	+				-0.0
3,470,080	+				-0.1
3,470,080	+				+0.7
3,470,080	+				-0.5
3,470,080	+				+0.2
3,470,080	+				+1.4
3,470,081	-				+0.5
3,470,081	-				+0.3