Strain Fitness in Pantoea sp. MT58 around IAI47_16015

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
3,381,724	+		IAI47_16010	0.32	-4.7
3,381,724	+		IAI47_16010	0.32	-2.6
3,381,724	+		IAI47_16010	0.32	-1.9
3,381,724	+		IAI47_16010	0.32	-3.4
3,381,724	+		IAI47_16010	0.32	-4.5
3,381,724	+		IAI47_16010	0.32	-3.1
3,381,724	+		IAI47_16010	0.32	-2.8
3,381,724	+		IAI47_16010	0.32	-3.5
3,381,725	-		IAI47_16010	0.32	-4.9
3,381,725	-		IAI47_16010	0.32	-4.4
3,381,725	-		IAI47_16010	0.32	-0.9
3,381,725	-		IAI47_16010	0.32	-0.3
3,381,725	-		IAI47_16010	0.32	-4.0
3,381,725	-		IAI47_16010	0.32	+0.7
3,381,725	-		IAI47_16010	0.32	-3.1
3,381,778	+		IAI47_16010	0.36	-3.8
3,381,778	+		IAI47_16010	0.36	-3.9
3,381,779	-		IAI47_16010	0.36	-1.6
3,381,779	-		IAI47_16010	0.36	-4.3
3,381,804	-		IAI47_16010	0.38	-3.6
3,381,836	+		IAI47_16010	0.40	-3.6
3,381,836	+		IAI47_16010	0.40	-3.1
3,381,864	+		IAI47_16010	0.42	-4.4
3,381,864	+		IAI47_16010	0.42	-2.6
3,381,865	-		IAI47_16010	0.42	-1.3
3,381,865	-		IAI47_16010	0.42	-2.3
3,381,865	-		IAI47_16010	0.42	-3.6
3,381,917	+		IAI47_16010	0.46	-1.6
3,381,917	+		IAI47_16010	0.46	-3.0
3,381,917	+		IAI47_16010	0.46	-1.9
3,381,917	+		IAI47_16010	0.46	-0.9
3,381,917	+		IAI47_16010	0.46	-2.9
3,381,917	+		IAI47_16010	0.46	-2.1
3,381,918	-		IAI47_16010	0.46	-1.3
3,381,918	-		IAI47_16010	0.46	-2.6
3,381,967	+		IAI47_16010	0.49	-4.0
3,381,968	-		IAI47_16010	0.49	-2.5
3,381,983	+		IAI47_16010	0.50	-4.1
3,381,984	-		IAI47_16010	0.51	-3.9
3,381,984	-		IAI47_16010	0.51	-3.2
3,381,984	-		IAI47_16010	0.51	-3.7
3,381,984	-		IAI47_16010	0.51	-3.9
3,381,984	-		IAI47_16010	0.51	-1.9
3,381,993	+		IAI47_16010	0.51	-1.9
3,381,993	+		IAI47_16010	0.51	-2.2
3,382,050	+		IAI47_16010	0.55	-1.9
3,382,050	+		IAI47_16010	0.55	-3.4
3,382,050	+		IAI47_16010	0.55	-3.5
3,382,086	+		IAI47_16010	0.58	-3.2
3,382,086	+		IAI47_16010	0.58	-4.6
3,382,086	+		IAI47_16010	0.58	-1.3
3,382,086	+		IAI47_16010	0.58	-3.8
3,382,086	+		IAI47_16010	0.58	-3.1
3,382,086	+		IAI47_16010	0.58	-0.9
3,382,086	+		IAI47_16010	0.58	-2.9
3,382,087	-		IAI47_16010	0.58	-2.8
3,382,087	-		IAI47_16010	0.58	-3.9
3,382,087	-		IAI47_16010	0.58	+0.7
3,382,087	-		IAI47_16010	0.58	-2.9
3,382,087	-		IAI47_16010	0.58	-3.7
3,382,087	-		IAI47_16010	0.58	-0.9
3,382,087	-		IAI47_16010	0.58	-4.4
3,382,087	-		IAI47_16010	0.58	-4.1
3,382,096	+		IAI47_16010	0.58	-3.6
3,382,097	-		IAI47_16010	0.59	-3.6
3,382,097	-		IAI47_16010	0.59	-2.6
3,382,097	-		IAI47_16010	0.59	-2.1
3,382,242	+		IAI47_16010	0.69	-1.6
3,382,242	+		IAI47_16010	0.69	-1.9
3,382,243	-		IAI47_16010	0.69	-2.8
3,382,265	+		IAI47_16010	0.71	-1.3
3,382,266	-		IAI47_16010	0.71	-3.2
3,382,322	+		IAI47_16010	0.75	-2.1
3,382,322	+		IAI47_16010	0.75	-1.6
3,382,323	-		IAI47_16010	0.75	-2.9
3,382,323	-		IAI47_16010	0.75	-2.6
3,382,323	-		IAI47_16010	0.75	-3.3
3,382,445	+		IAI47_16010	0.83	-3.9
3,382,548	-				-2.9
3,382,548	-				-2.6
3,382,548	-				-2.7
3,382,548	-				-2.9
3,382,560	-				-2.3
3,382,560	-				-2.3
3,382,560	-				-2.5
3,382,592	+				-2.8
3,382,592	+				-1.9
3,382,592	+				+0.7
3,382,593	-				-3.2
3,382,593	-				-1.9
3,382,593	-				-2.9
3,382,593	-				-1.9
3,382,593	-				-2.6
3,382,677	+				-2.8
3,382,677	+				-5.1
3,382,677	+				-2.5
3,382,677	+				-1.9
3,382,677	+				-3.3
3,382,677	+				+0.7
3,382,678	-				-2.8
3,382,678	-				-1.6
3,382,678	-				-3.8
3,382,678	-				-3.8
3,382,678	-				-2.1
3,382,678	-				-2.3
3,382,678	-				-2.3
3,382,691	+				-3.4
3,382,692	-				-2.8
3,382,844	+		IAI47_16015	0.27	-4.2
3,382,845	-		IAI47_16015	0.27	-1.9
3,382,874	+		IAI47_16015	0.32	-3.1
3,382,874	+		IAI47_16015	0.32	-3.3
3,382,874	+		IAI47_16015	0.32	-0.3
3,382,875	-		IAI47_16015	0.32	-3.7
3,382,886	+		IAI47_16015	0.33	-3.6
3,382,887	-		IAI47_16015	0.34	-2.9
3,383,006	+		IAI47_16015	0.53	-1.9
3,383,008	+		IAI47_16015	0.54	-1.9
3,383,054	-		IAI47_16015	0.61	-3.3
3,383,161	-		IAI47_16015	0.79	-3.3
3,383,177	+		IAI47_16015	0.82	-2.1
3,383,201	+		IAI47_16015	0.85	-0.9
3,383,201	+		IAI47_16015	0.85	-1.3
3,383,201	+		IAI47_16015	0.85	-2.6
3,383,201	+		IAI47_16015	0.85	-0.9
3,383,202	-		IAI47_16015	0.86	-1.9
3,383,202	-		IAI47_16015	0.86	-2.8
3,383,202	-		IAI47_16015	0.86	-3.3
3,383,256	+				-3.2
3,383,256	+				-2.5
3,383,257	-				-4.5
3,383,257	-				-3.2
3,383,257	-				-1.3
3,383,257	-				-3.5
3,383,296	-				+0.9
3,383,329	+				-0.1
3,383,329	+				+0.4
3,383,330	-				-1.0
3,383,330	-				-0.2
3,383,331	+				+0.4
3,383,331	+				+0.5
3,383,331	+				+0.7
3,383,331	+				+2.2
3,383,331	+				+0.3
3,383,332	-				+0.8
3,383,332	-				-0.3
3,383,535	+		IAI47_16020	0.18	+0.4
3,383,535	+		IAI47_16020	0.18	-1.3
3,383,535	+		IAI47_16020	0.18	+0.4
3,383,535	+		IAI47_16020	0.18	+0.9
3,383,536	-		IAI47_16020	0.18	+1.3
3,383,546	+		IAI47_16020	0.18	-1.6
3,383,547	-		IAI47_16020	0.19	+0.2
3,383,547	-		IAI47_16020	0.19	+0.3
3,383,547	-		IAI47_16020	0.19	-0.3
3,383,547	-		IAI47_16020	0.19	+0.8
3,383,547	-		IAI47_16020	0.19	-0.2
3,383,567	+		IAI47_16020	0.20	+0.2
3,383,568	-		IAI47_16020	0.20	-1.8
3,383,568	-		IAI47_16020	0.20	-0.4
3,383,568	-		IAI47_16020	0.20	-0.0
3,383,577	+		IAI47_16020	0.21	-0.4
3,383,577	+		IAI47_16020	0.21	+1.2
3,383,577	+		IAI47_16020	0.21	-0.9
3,383,577	+		IAI47_16020	0.21	+0.5
3,383,578	-		IAI47_16020	0.21	-0.3
3,383,578	-		IAI47_16020	0.21	-0.4
3,383,578	-		IAI47_16020	0.21	+0.3
3,383,578	-		IAI47_16020	0.21	-0.7
3,383,686	+		IAI47_16020	0.30	-0.4
3,383,686	+		IAI47_16020	0.30	+0.3
3,383,783	+		IAI47_16020	0.39	-0.1
3,383,785	+		IAI47_16020	0.39	+0.4
3,383,786	-		IAI47_16020	0.39	-0.0
3,383,786	-		IAI47_16020	0.39	-0.5
3,383,796	-		IAI47_16020	0.40	-0.5
3,383,796	-		IAI47_16020	0.40	-1.3
3,383,796	-		IAI47_16020	0.40	-0.4
3,383,796	-		IAI47_16020	0.40	+1.0
3,383,804	+		IAI47_16020	0.40	+0.2
3,383,804	+		IAI47_16020	0.40	-0.1
3,383,804	+		IAI47_16020	0.40	+0.5
3,383,804	+		IAI47_16020	0.40	+1.5
3,383,804	+		IAI47_16020	0.40	-0.1
3,383,804	+		IAI47_16020	0.40	-0.8
3,383,805	-		IAI47_16020	0.40	+1.3
3,383,805	-		IAI47_16020	0.40	-0.6
3,383,805	-		IAI47_16020	0.40	+0.7
3,383,805	-		IAI47_16020	0.40	-0.1
3,383,805	-		IAI47_16020	0.40	-1.4
3,383,806	+		IAI47_16020	0.41	-0.6
3,383,806	+		IAI47_16020	0.41	-0.6
3,383,806	+		IAI47_16020	0.41	-0.3
3,383,806	+		IAI47_16020	0.41	+0.5
3,383,806	+		IAI47_16020	0.41	-0.9
3,383,806	+		IAI47_16020	0.41	-0.7
3,383,806	+		IAI47_16020	0.41	-0.6
3,383,806	+		IAI47_16020	0.41	+0.1
3,383,807	-		IAI47_16020	0.41	-0.9
3,383,807	-		IAI47_16020	0.41	+0.5
3,383,807	-		IAI47_16020	0.41	-1.6
3,383,807	-		IAI47_16020	0.41	+1.1
3,383,807	-		IAI47_16020	0.41	+0.1
3,383,936	+		IAI47_16020	0.52	+1.7
3,383,954	+		IAI47_16020	0.53	+0.7
3,383,954	+		IAI47_16020	0.53	+2.1
3,383,954	+		IAI47_16020	0.53	+1.0
3,383,954	+		IAI47_16020	0.53	+0.5
3,383,955	-		IAI47_16020	0.53	-0.3
3,383,955	-		IAI47_16020	0.53	-0.4
3,383,955	-		IAI47_16020	0.53	+0.6
3,383,955	-		IAI47_16020	0.53	+0.0
3,383,984	+		IAI47_16020	0.56	-0.5
3,383,984	+		IAI47_16020	0.56	-0.5
3,383,984	+		IAI47_16020	0.56	+0.2
3,383,984	+		IAI47_16020	0.56	-0.1
3,383,984	+		IAI47_16020	0.56	-1.5
3,383,984	+		IAI47_16020	0.56	+0.1
3,383,985	-		IAI47_16020	0.56	+0.1
3,383,985	-		IAI47_16020	0.56	+0.7
3,383,985	-		IAI47_16020	0.56	+0.0
3,383,985	-		IAI47_16020	0.56	+0.9
3,383,985	-		IAI47_16020	0.56	+0.2
3,384,115	+		IAI47_16020	0.67	+1.1
3,384,115	+		IAI47_16020	0.67	-0.3
3,384,115	+		IAI47_16020	0.67	-1.4
3,384,116	-		IAI47_16020	0.67	-1.1
3,384,116	-		IAI47_16020	0.67	+0.1
3,384,147	-		IAI47_16020	0.69	+0.7
3,384,174	+		IAI47_16020	0.72	+0.2
3,384,174	+		IAI47_16020	0.72	+0.7
3,384,174	+		IAI47_16020	0.72	+0.7
3,384,174	+		IAI47_16020	0.72	-0.4
3,384,174	+		IAI47_16020	0.72	-0.7
3,384,175	-		IAI47_16020	0.72	-1.2
3,384,175	-		IAI47_16020	0.72	+1.6
3,384,175	-		IAI47_16020	0.72	-0.5
3,384,175	-		IAI47_16020	0.72	-0.1
3,384,175	-		IAI47_16020	0.72	+0.8
3,384,175	-		IAI47_16020	0.72	-0.8
3,384,199	+		IAI47_16020	0.74	-0.3
3,384,199	+		IAI47_16020	0.74	-0.0
3,384,199	+		IAI47_16020	0.74	-0.7
3,384,200	-		IAI47_16020	0.74	-0.7
3,384,200	-		IAI47_16020	0.74	+1.1
3,384,200	-		IAI47_16020	0.74	+0.8
3,384,222	+		IAI47_16020	0.76	-0.9
3,384,264	-		IAI47_16020	0.79	+0.7
3,384,264	-		IAI47_16020	0.79	-0.3
3,384,264	-		IAI47_16020	0.79	+1.1
3,384,264	-		IAI47_16020	0.79	-0.0