Strain Fitness in Pantoea sp. MT58 around IAI47_14550

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
3,070,068	+				-0.2
3,070,122	+				+0.1
3,070,122	+				-0.4
3,070,122	+				-1.4
3,070,122	+				+0.4
3,070,122	+				-0.3
3,070,122	+				+0.7
3,070,123	-				-1.2
3,070,123	-				-1.1
3,070,123	-				-0.5
3,070,123	-				-1.9
3,070,123	-				-0.0
3,070,130	+				+0.4
3,070,130	+				+0.2
3,070,130	+				+0.1
3,070,130	+				-1.0
3,070,130	+				+0.1
3,070,130	+				+0.4
3,070,130	+				+1.1
3,070,130	+				-0.1
3,070,130	+				+0.5
3,070,130	+				+0.0
3,070,130	+				-0.4
3,070,130	+				+0.9
3,070,130	+				+0.1
3,070,130	+				-0.3
3,070,130	+				-0.1
3,070,131	-				-0.3
3,070,131	-				-0.3
3,070,131	-				-0.6
3,070,131	-				+0.6
3,070,131	-				+0.2
3,070,131	-				-0.8
3,070,131	-				-0.3
3,070,131	-				+0.7
3,070,131	-				-0.0
3,070,131	-				-0.2
3,070,131	-				-0.6
3,070,134	+				+0.7
3,070,134	+				+1.0
3,070,134	+				+0.7
3,070,134	+				+0.4
3,070,134	+				+0.0
3,070,134	+				+0.7
3,070,134	+				-0.1
3,070,135	-				+1.5
3,070,135	-				+0.3
3,070,135	-				-0.1
3,070,135	-				-0.2
3,070,135	-				-0.1
3,070,135	-				+0.7
3,070,135	-				+0.7
3,070,135	-				+1.3
3,070,164	-				+0.5
3,070,176	-				+1.0
3,070,181	+				+0.4
3,070,185	-				-0.2
3,070,186	+				-0.8
3,070,186	+				-0.5
3,070,186	+				+0.0
3,070,186	+				-0.9
3,070,208	+				+0.5
3,070,208	+				+0.2
3,070,209	-				-0.1
3,070,209	-				-0.9
3,070,209	-				-0.4
3,070,209	-				-0.0
3,070,222	+				+1.0
3,070,222	+				-0.7
3,070,232	+				-1.0
3,070,232	+				+1.7
3,070,233	-				-0.8
3,070,236	+				+0.0
3,070,236	+				-1.0
3,070,237	-				+0.5
3,070,237	-				+0.4
3,070,237	-				+0.9
3,070,359	+				+0.6
3,070,359	+				+0.2
3,070,359	+				-0.0
3,070,360	-				+0.4
3,070,360	-				-0.4
3,070,365	+				-0.4
3,070,365	+				-0.0
3,070,366	-				-0.2
3,070,375	+				-1.5
3,070,376	-				-0.1
3,070,378	-				+1.1
3,070,390	+				+0.1
3,070,390	+				+0.8
3,070,390	+				-1.1
3,070,390	+				-0.4
3,070,390	+				+0.7
3,070,390	+				-0.6
3,070,390	+				-0.5
3,070,390	+				-0.3
3,070,391	-				+0.9
3,070,391	-				-0.3
3,070,391	-				-0.4
3,070,391	-				+0.1
3,070,414	+				-0.0
3,070,415	-				-0.5
3,070,415	-				+0.9
3,070,415	-				+1.7
3,070,469	-		IAI47_14545	0.22	-2.8
3,070,484	+		IAI47_14545	0.26	-2.6
3,070,503	+		IAI47_14545	0.32	-1.0
3,070,503	+		IAI47_14545	0.32	-0.4
3,070,504	-		IAI47_14545	0.32	+0.6
3,070,504	-		IAI47_14545	0.32	+0.7
3,070,504	-		IAI47_14545	0.32	+1.3
3,070,530	+		IAI47_14545	0.39	+0.2
3,070,530	+		IAI47_14545	0.39	-1.1
3,070,530	+		IAI47_14545	0.39	+0.7
3,070,531	-		IAI47_14545	0.40	-0.4
3,070,565	+		IAI47_14545	0.49	-0.3
3,070,580	-		IAI47_14545	0.53	-1.1
3,070,590	+		IAI47_14545	0.56	+0.8
3,070,635	+		IAI47_14545	0.69	+0.8
3,070,636	-		IAI47_14545	0.69	+0.3
3,070,749	+				-0.1
3,070,750	-				+0.5
3,070,772	-				+0.5
3,070,786	-				+1.4
3,070,786	-				-0.1
3,070,792	-				+0.8
3,070,806	-				+0.4
3,070,806	-				-0.2
3,070,820	+				+0.9
3,070,872	+				+0.5
3,070,872	+				+0.0
3,070,872	+				+0.7
3,070,873	-				+0.8
3,070,873	-				-0.2
3,070,876	+				+0.7
3,070,876	+				+0.7
3,070,876	+				+1.0
3,070,876	+				-0.4
3,070,876	+				-0.5
3,070,876	+				+0.5
3,070,877	-				+0.1
3,070,877	-				+1.3
3,070,877	-				-1.3
3,070,877	-				-1.0
3,070,877	-				+0.4
3,070,877	-				+0.3
3,070,877	-				-0.5
3,070,877	-				+0.6
3,070,901	+				-1.1
3,070,921	+				+0.3
3,070,921	+				-2.3
3,070,921	+				-0.9
3,070,921	+				+0.9
3,070,921	+				+0.0
3,070,922	-				-0.8
3,070,922	-				+0.7
3,070,922	-				-1.5
3,070,933	+		IAI47_14550	0.11	+0.7
3,070,933	+		IAI47_14550	0.11	-0.3
3,070,933	+		IAI47_14550	0.11	-0.7
3,070,934	-		IAI47_14550	0.11	+0.7
3,070,934	-		IAI47_14550	0.11	-0.2
3,070,934	-		IAI47_14550	0.11	+1.4
3,070,934	-		IAI47_14550	0.11	-0.5
3,070,934	-		IAI47_14550	0.11	-0.2
3,070,934	-		IAI47_14550	0.11	-0.3
3,070,934	-		IAI47_14550	0.11	+0.0
3,070,934	-		IAI47_14550	0.11	+0.1
3,070,937	+		IAI47_14550	0.12	-0.2
3,070,937	+		IAI47_14550	0.12	-0.9
3,070,937	+		IAI47_14550	0.12	+0.5
3,070,937	+		IAI47_14550	0.12	+0.7
3,070,937	+		IAI47_14550	0.12	-0.7
3,070,937	+		IAI47_14550	0.12	+1.7
3,070,938	-		IAI47_14550	0.12	-0.3
3,070,938	-		IAI47_14550	0.12	-0.6
3,070,938	-		IAI47_14550	0.12	+0.8
3,070,941	+		IAI47_14550	0.13	-0.6
3,070,941	+		IAI47_14550	0.13	-0.4
3,070,941	+		IAI47_14550	0.13	-0.0
3,070,941	+		IAI47_14550	0.13	-0.3
3,070,941	+		IAI47_14550	0.13	+0.7
3,070,941	+		IAI47_14550	0.13	+0.0
3,070,941	+		IAI47_14550	0.13	+0.4
3,070,941	+		IAI47_14550	0.13	+0.1
3,070,941	+		IAI47_14550	0.13	+1.8
3,070,941	+		IAI47_14550	0.13	-0.3
3,070,941	+		IAI47_14550	0.13	+0.1
3,070,942	-		IAI47_14550	0.13	-0.3
3,070,942	-		IAI47_14550	0.13	-0.5
3,070,942	-		IAI47_14550	0.13	-0.7
3,070,942	-		IAI47_14550	0.13	-1.3
3,070,942	-		IAI47_14550	0.13	+0.0
3,070,942	-		IAI47_14550	0.13	-1.1
3,070,978	-		IAI47_14550	0.23	-1.4
3,071,035	+		IAI47_14550	0.38	+0.0
3,071,036	-		IAI47_14550	0.38	+0.4
3,071,075	+		IAI47_14550	0.48	-0.1
3,071,083	+		IAI47_14550	0.51	+1.0
3,071,137	+		IAI47_14550	0.65	-0.9
3,071,138	-		IAI47_14550	0.65	-1.3
3,071,138	-		IAI47_14550	0.65	-1.6
3,071,138	-		IAI47_14550	0.65	+0.8
3,071,143	+		IAI47_14550	0.66	+0.4
3,071,143	+		IAI47_14550	0.66	-0.0
3,071,143	+		IAI47_14550	0.66	+0.3
3,071,144	-		IAI47_14550	0.67	-1.6
3,071,144	-		IAI47_14550	0.67	-0.4
3,071,149	-		IAI47_14550	0.68	+1.4
3,071,159	+		IAI47_14550	0.71	-0.1
3,071,159	+		IAI47_14550	0.71	-0.3
3,071,159	+		IAI47_14550	0.71	+0.6
3,071,159	+		IAI47_14550	0.71	-0.4
3,071,160	-		IAI47_14550	0.71	-0.3
3,071,160	-		IAI47_14550	0.71	+0.6
3,071,160	-		IAI47_14550	0.71	-0.6
3,071,160	-		IAI47_14550	0.71	+0.5
3,071,171	-		IAI47_14550	0.74	-0.1
3,071,211	+		IAI47_14550	0.84	+0.7
3,071,211	+		IAI47_14550	0.84	-3.2
3,071,211	+		IAI47_14550	0.84	-0.3
3,071,215	+		IAI47_14550	0.85	-1.3
3,071,215	+		IAI47_14550	0.85	+1.7
3,071,216	-		IAI47_14550	0.86	-0.3
3,071,265	+				+0.2
3,071,265	+				-0.2
3,071,266	-				-0.6
3,071,266	-				+3.0
3,071,266	-				-0.5
3,071,267	+				-0.4
3,071,268	-				+1.3
3,071,268	-				-0.0
3,071,268	-				-0.9
3,071,270	+				-0.1
3,071,270	+				+1.4
3,071,270	+				-0.2
3,071,270	+				-2.2
3,071,270	+				+0.5
3,071,270	+				+0.2
3,071,271	-				-0.3
3,071,271	-				-1.0
3,071,271	-				+0.9
3,071,271	-				-0.8
3,071,271	-				-2.1
3,071,271	-				+0.0
3,071,271	-				-0.0
3,071,271	-				-0.4
3,071,290	-				+0.5
3,071,290	-				-0.0
3,071,321	+		IAI47_14555	0.12	+1.0
3,071,322	-		IAI47_14555	0.13	+0.1
3,071,387	+		IAI47_14555	0.43	-0.3
3,071,387	+		IAI47_14555	0.43	-0.5
3,071,388	-		IAI47_14555	0.44	+0.4
3,071,394	+		IAI47_14555	0.46	-0.1
3,071,394	+		IAI47_14555	0.46	+0.2
3,071,395	-		IAI47_14555	0.47	+0.7
3,071,473	+		IAI47_14555	0.83	-2.6
3,071,513	+				-2.3
3,071,513	+				+0.8
3,071,520	+				-0.1
3,071,520	+				+1.0
3,071,520	+				+0.7
3,071,520	+				+1.4
3,071,521	-				-0.0
3,071,521	-				-1.3
3,071,523	+				+0.5
3,071,524	-				-1.3
3,071,524	-				+0.2
3,071,527	+				+1.1
3,071,527	+				+0.2
3,071,527	+				+1.3
3,071,528	-				-0.3
3,071,528	-				+0.5
3,071,528	-				-1.0
3,071,528	-				+2.2
3,071,528	-				-3.0
3,071,533	+				+0.3
3,071,534	-				-0.2
3,071,542	+				-0.3
3,071,543	-				-0.1
3,071,553	-				+0.2
3,071,813	+				-1.5
3,071,853	+				-1.2
3,071,854	-				+0.1
3,071,854	-				-0.7
3,071,881	+				-0.3
3,071,881	+				-0.6
3,071,881	+				+0.1
3,071,887	+				+0.7
3,071,887	+				-0.9
3,071,888	-				-1.3
3,071,896	-				-0.0
3,071,896	-				+0.0
3,071,909	+				-0.3
3,071,909	+				+0.2
3,071,909	+				-0.6
3,071,910	-				+0.9
3,071,910	-				-0.2
3,071,910	-				-0.4
3,071,922	+				-0.9
3,071,922	+				+0.0
3,071,923	-				+0.0
3,071,923	-				+1.7
3,071,923	-				-1.5
3,071,987	-		IAI47_14565	0.18	-0.3
3,071,987	-		IAI47_14565	0.18	-0.6
3,072,000	+		IAI47_14565	0.22	-0.9
3,072,000	+		IAI47_14565	0.22	+1.3
3,072,000	+		IAI47_14565	0.22	-0.0
3,072,000	+		IAI47_14565	0.22	-0.4
3,072,000	+		IAI47_14565	0.22	+0.4
3,072,000	+		IAI47_14565	0.22	-0.3
3,072,001	-		IAI47_14565	0.23	-0.4
3,072,001	-		IAI47_14565	0.23	+2.7
3,072,001	-		IAI47_14565	0.23	-0.2
3,072,001	-		IAI47_14565	0.23	-1.6
3,072,001	-		IAI47_14565	0.23	+0.3
3,072,001	-		IAI47_14565	0.23	+0.7
3,072,004	+		IAI47_14565	0.24	-0.8
3,072,004	+		IAI47_14565	0.24	+0.7
3,072,004	+		IAI47_14565	0.24	+0.1
3,072,005	-		IAI47_14565	0.24	+0.1
3,072,005	-		IAI47_14565	0.24	-0.9
3,072,005	-		IAI47_14565	0.24	-0.0
3,072,005	-		IAI47_14565	0.24	-0.0
3,072,005	-		IAI47_14565	0.24	-0.2
3,072,005	-		IAI47_14565	0.24	+0.1
3,072,088	-		IAI47_14565	0.50	-1.5
3,072,088	-		IAI47_14565	0.50	+0.3
3,072,088	-		IAI47_14565	0.50	-0.4
3,072,088	-		IAI47_14565	0.50	+0.4
3,072,123	+		IAI47_14565	0.61	+0.0
3,072,185	+		IAI47_14565	0.81	-0.3
3,072,185	+		IAI47_14565	0.81	-0.3
3,072,185	+		IAI47_14565	0.81	-1.3
3,072,185	+		IAI47_14565	0.81	-0.0
3,072,185	+		IAI47_14565	0.81	-0.9
3,072,186	-		IAI47_14565	0.81	+0.4
3,072,186	-		IAI47_14565	0.81	-0.0
3,072,191	+		IAI47_14565	0.82	-0.2
3,072,191	+		IAI47_14565	0.82	-1.6
3,072,191	+		IAI47_14565	0.82	-1.3
3,072,191	+		IAI47_14565	0.82	+0.2
3,072,191	+		IAI47_14565	0.82	+0.4
3,072,191	+		IAI47_14565	0.82	-1.4
3,072,191	+		IAI47_14565	0.82	+1.0
3,072,191	+		IAI47_14565	0.82	-1.2
3,072,191	+		IAI47_14565	0.82	+1.4
3,072,192	-		IAI47_14565	0.83	-0.3
3,072,192	-		IAI47_14565	0.83	-0.8
3,072,192	-		IAI47_14565	0.83	-1.3
3,072,192	-		IAI47_14565	0.83	+2.5
3,072,192	-		IAI47_14565	0.83	-1.3
3,072,192	-		IAI47_14565	0.83	+0.2
3,072,192	-		IAI47_14565	0.83	+0.0
3,072,192	-		IAI47_14565	0.83	+1.0
3,072,214	-		IAI47_14565	0.90	+1.4
3,072,223	+				+0.1
3,072,223	+				+0.2
3,072,223	+				+1.2
3,072,224	-				-0.2
3,072,224	-				-1.4
3,072,224	-				-0.3
3,072,245	-				+1.7
3,072,245	-				+1.2
3,072,245	-				+1.3