Strain Fitness in Pantoea sp. MT58 around IAI47_12060

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,552,950	-				-0.9
2,553,040	-				-1.1
2,553,040	-				+1.6
2,553,040	-				+1.1
2,553,069	-				+0.1
2,553,103	-				+1.8
2,553,103	-				-0.8
2,553,138	-		IAI47_12055	0.14	-0.2
2,553,138	-		IAI47_12055	0.14	+0.3
2,553,138	-		IAI47_12055	0.14	-1.4
2,553,138	-		IAI47_12055	0.14	-0.1
2,553,138	-		IAI47_12055	0.14	-0.4
2,553,138	-		IAI47_12055	0.14	-0.7
2,553,142	-		IAI47_12055	0.14	+0.4
2,553,142	-		IAI47_12055	0.14	-1.1
2,553,142	-		IAI47_12055	0.14	+0.6
2,553,142	-		IAI47_12055	0.14	-1.0
2,553,142	-		IAI47_12055	0.14	+1.6
2,553,142	-		IAI47_12055	0.14	+1.0
2,553,142	-		IAI47_12055	0.14	+0.1
2,553,142	-		IAI47_12055	0.14	-0.8
2,553,142	-		IAI47_12055	0.14	-1.0
2,553,190	-		IAI47_12055	0.20	+0.4
2,553,228	-		IAI47_12055	0.25	-1.0
2,553,429	-		IAI47_12055	0.50	-0.9
2,553,467	+		IAI47_12055	0.54	-0.0
2,553,495	+		IAI47_12055	0.58	-0.6
2,553,495	+		IAI47_12055	0.58	+0.4
2,553,495	+		IAI47_12055	0.58	+0.2
2,553,495	+		IAI47_12055	0.58	+0.7
2,553,495	+		IAI47_12055	0.58	+0.6
2,553,496	-		IAI47_12055	0.58	-1.0
2,553,496	-		IAI47_12055	0.58	+1.4
2,553,496	-		IAI47_12055	0.58	-1.1
2,553,496	-		IAI47_12055	0.58	+0.0
2,553,496	-		IAI47_12055	0.58	-0.4
2,553,498	-		IAI47_12055	0.58	-1.3
2,553,498	-		IAI47_12055	0.58	+1.6
2,553,505	+		IAI47_12055	0.59	+0.8
2,553,505	+		IAI47_12055	0.59	-0.7
2,553,505	+		IAI47_12055	0.59	+1.4
2,553,505	+		IAI47_12055	0.59	-1.0
2,553,505	+		IAI47_12055	0.59	-0.0
2,553,505	+		IAI47_12055	0.59	-1.8
2,553,506	-		IAI47_12055	0.59	-0.3
2,553,506	-		IAI47_12055	0.59	+3.4
2,553,506	-		IAI47_12055	0.59	+0.3
2,553,506	-		IAI47_12055	0.59	-0.5
2,553,506	-		IAI47_12055	0.59	+0.6
2,553,506	-		IAI47_12055	0.59	+0.4
2,553,506	-		IAI47_12055	0.59	+1.4
2,553,506	-		IAI47_12055	0.59	-0.1
2,553,506	-		IAI47_12055	0.59	+0.1
2,553,569	-		IAI47_12055	0.67	+0.9
2,553,569	-		IAI47_12055	0.67	-0.6
2,553,596	+		IAI47_12055	0.70	+0.1
2,553,597	-		IAI47_12055	0.70	+0.9
2,553,628	+		IAI47_12055	0.74	-1.2
2,553,629	-		IAI47_12055	0.74	+0.2
2,553,629	-		IAI47_12055	0.74	-0.4
2,553,704	+		IAI47_12055	0.83	+1.8
2,553,704	+		IAI47_12055	0.83	+0.3
2,553,716	+		IAI47_12055	0.85	-0.3
2,553,740	+		IAI47_12055	0.88	+0.2
2,553,762	-				-1.0
2,553,765	-				+1.9
2,553,765	-				-0.6
2,553,915	+				+0.3
2,553,915	+				+0.5
2,553,915	+				+1.0
2,553,915	+				-0.1
2,553,916	-				+0.5
2,553,932	+				-0.6
2,553,933	-				+1.3
2,553,933	-				-0.3
2,553,940	-				+1.9
2,553,996	-				-1.2
2,554,031	-				-0.4
2,554,075	-		IAI47_12060	0.12	-1.4
2,554,075	-		IAI47_12060	0.12	-1.3
2,554,116	-		IAI47_12060	0.15	-0.4
2,554,258	-		IAI47_12060	0.26	-0.4
2,554,275	-		IAI47_12060	0.28	+0.2
2,554,275	-		IAI47_12060	0.28	-0.4
2,554,370	+		IAI47_12060	0.35	-0.8
2,554,371	-		IAI47_12060	0.35	+1.6
2,554,371	-		IAI47_12060	0.35	-1.4
2,554,633	-		IAI47_12060	0.57	+0.6
2,554,635	-		IAI47_12060	0.57	-2.6
2,554,644	+		IAI47_12060	0.57	-0.2
2,554,644	+		IAI47_12060	0.57	-0.1
2,554,645	-		IAI47_12060	0.57	+0.3
2,554,680	+		IAI47_12060	0.60	-0.6
2,554,681	-		IAI47_12060	0.60	+0.4
2,554,722	-		IAI47_12060	0.64	-1.1
2,554,722	-		IAI47_12060	0.64	-0.4
2,554,752	+		IAI47_12060	0.66	-0.4
2,554,815	+		IAI47_12060	0.71	+1.2
2,554,816	-		IAI47_12060	0.71	+0.6
2,554,816	-		IAI47_12060	0.71	-0.2
2,554,927	-		IAI47_12060	0.80	-0.7
2,554,934	-		IAI47_12060	0.81	-0.8
2,554,988	+		IAI47_12060	0.85	+0.6
2,554,989	-		IAI47_12060	0.85	-0.6
2,555,104	-				+0.2
2,555,111	-				+0.0
2,555,156	-				-0.6
2,555,156	-				+0.2
2,555,167	-				-0.4
2,555,196	+				-2.2
2,555,197	-				+0.6
2,555,197	-				+0.9
2,555,204	+				+0.9
2,555,205	-				-1.2
2,555,205	-				+0.6
2,555,205	-				+0.2
2,555,205	-				-0.1
2,555,205	-				+1.0
2,555,205	-				-0.0
2,555,205	-				-0.1
2,555,205	-				+0.3
2,555,603	-				+0.9
2,555,647	+				+1.6
2,555,648	-				-0.1
2,555,648	-				-0.2
2,555,648	-				+0.0
2,555,660	-				-2.0
2,555,660	-				+1.0