Strain Fitness in Pantoea sp. MT58 around IAI47_11935

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,524,685	+				+0.0
2,524,685	+				-0.3
2,524,685	+				-0.1
2,524,686	-				+1.2
2,524,686	-				+0.2
2,524,688	+				+0.6
2,524,689	-				-0.1
2,524,689	-				-0.8
2,524,737	+				-1.2
2,524,750	+				+0.8
2,524,751	-				-2.9
2,524,781	-				-2.0
2,524,792	-				-3.4
2,524,792	-				-4.2
2,524,850	+				-2.6
2,524,851	-				-1.4
2,524,851	-				-2.0
2,524,851	-				-1.4
2,525,083	+		IAI47_11930	0.43	-3.4
2,525,083	+		IAI47_11930	0.43	-3.1
2,525,083	+		IAI47_11930	0.43	-2.2
2,525,083	+		IAI47_11930	0.43	-1.0
2,525,083	+		IAI47_11930	0.43	-2.0
2,525,084	-		IAI47_11930	0.44	-1.4
2,525,084	-		IAI47_11930	0.44	-2.6
2,525,084	-		IAI47_11930	0.44	-1.4
2,525,175	+		IAI47_11930	0.57	-0.7
2,525,254	+		IAI47_11930	0.69	-2.6
2,525,255	-		IAI47_11930	0.69	-3.3
2,525,255	-		IAI47_11930	0.69	-1.0
2,525,301	+		IAI47_11930	0.76	-2.2
2,525,302	-		IAI47_11930	0.76	-1.7
2,525,302	-		IAI47_11930	0.76	-1.7
2,525,302	-		IAI47_11930	0.76	-3.6
2,525,326	+		IAI47_11930	0.80	-2.7
2,525,474	+				-3.5
2,525,475	-				-1.0
2,525,489	+				-3.2
2,525,489	+				-2.4
2,525,490	-				-3.2
2,525,490	-				-1.4
2,525,530	+				+0.6
2,525,530	+				-1.7
2,525,530	+				-0.4
2,525,531	-				-2.5
2,525,531	-				-2.6
2,525,553	+				-1.0
2,525,577	+				-1.0
2,525,577	+				-4.4
2,525,577	+				-2.7
2,525,577	+				-3.3
2,525,577	+				-1.0
2,525,577	+				-2.7
2,525,578	-				-2.6
2,525,578	-				-2.6
2,525,595	-				-1.7
2,525,604	+				-2.7
2,525,605	-				-2.6
2,525,724	+		IAI47_11935	0.18	-3.3
2,525,724	+		IAI47_11935	0.18	-2.0
2,525,725	-		IAI47_11935	0.18	-3.0
2,525,725	-		IAI47_11935	0.18	-2.2
2,525,817	+		IAI47_11935	0.24	-2.6
2,525,828	+		IAI47_11935	0.25	+0.6
2,525,829	-		IAI47_11935	0.25	-2.0
2,525,876	+		IAI47_11935	0.28	-1.2
2,525,876	+		IAI47_11935	0.28	-3.1
2,525,876	+		IAI47_11935	0.28	-2.2
2,525,877	-		IAI47_11935	0.28	+0.0
2,525,877	-		IAI47_11935	0.28	-2.9
2,525,877	-		IAI47_11935	0.28	-3.5
2,526,045	+		IAI47_11935	0.40	-1.0
2,526,045	+		IAI47_11935	0.40	-2.6
2,526,045	+		IAI47_11935	0.40	-2.2
2,526,045	+		IAI47_11935	0.40	-1.0
2,526,045	+		IAI47_11935	0.40	-1.2
2,526,045	+		IAI47_11935	0.40	-1.5
2,526,046	-		IAI47_11935	0.40	-3.2
2,526,046	-		IAI47_11935	0.40	-2.1
2,526,046	-		IAI47_11935	0.40	-3.2
2,526,046	-		IAI47_11935	0.40	-3.0
2,526,046	-		IAI47_11935	0.40	-1.7
2,526,046	-		IAI47_11935	0.40	-3.5
2,526,046	-		IAI47_11935	0.40	-3.1
2,526,067	+		IAI47_11935	0.41	-1.9
2,526,068	-		IAI47_11935	0.41	-3.1
2,526,074	+		IAI47_11935	0.42	-2.3
2,526,074	+		IAI47_11935	0.42	-3.6
2,526,075	-		IAI47_11935	0.42	-2.0
2,526,075	-		IAI47_11935	0.42	-2.4
2,526,180	-		IAI47_11935	0.49	-3.0
2,526,226	+		IAI47_11935	0.52	-2.1
2,526,226	+		IAI47_11935	0.52	-2.9
2,526,227	-		IAI47_11935	0.52	-2.0
2,526,249	+		IAI47_11935	0.54	-2.9
2,526,249	+		IAI47_11935	0.54	-3.3
2,526,250	-		IAI47_11935	0.54	-2.7
2,526,250	-		IAI47_11935	0.54	-2.0
2,526,251	+		IAI47_11935	0.54	-2.9
2,526,251	+		IAI47_11935	0.54	-2.7
2,526,252	-		IAI47_11935	0.54	-1.0
2,526,252	-		IAI47_11935	0.54	-2.0
2,526,313	+		IAI47_11935	0.58	-1.0
2,526,313	+		IAI47_11935	0.58	-2.4
2,526,314	-		IAI47_11935	0.58	-3.7
2,526,314	-		IAI47_11935	0.58	-1.4
2,526,358	+		IAI47_11935	0.61	-5.3
2,526,358	+		IAI47_11935	0.61	-4.2
2,526,358	+		IAI47_11935	0.61	-3.2
2,526,358	+		IAI47_11935	0.61	-1.4
2,526,358	+		IAI47_11935	0.61	-3.4
2,526,359	-		IAI47_11935	0.61	-2.3
2,526,359	-		IAI47_11935	0.61	-3.7
2,526,359	-		IAI47_11935	0.61	-3.1
2,526,398	+		IAI47_11935	0.64	-2.7
2,526,399	-		IAI47_11935	0.64	-2.7
2,526,417	+		IAI47_11935	0.65	-4.0
2,526,418	-		IAI47_11935	0.65	-2.0
2,526,420	+		IAI47_11935	0.66	-4.7
2,526,420	+		IAI47_11935	0.66	-3.1
2,526,420	+		IAI47_11935	0.66	-2.6
2,526,420	+		IAI47_11935	0.66	-0.4
2,526,420	+		IAI47_11935	0.66	-2.6
2,526,421	-		IAI47_11935	0.66	-1.7
2,526,421	-		IAI47_11935	0.66	+0.0
2,526,421	-		IAI47_11935	0.66	-2.0
2,526,438	-		IAI47_11935	0.67	-2.2
2,526,438	-		IAI47_11935	0.67	-1.4
2,526,438	-		IAI47_11935	0.67	-2.4
2,526,519	-		IAI47_11935	0.72	-4.0
2,526,519	-		IAI47_11935	0.72	-2.2
2,526,557	+		IAI47_11935	0.75	-2.1
2,526,557	+		IAI47_11935	0.75	-1.7
2,526,557	+		IAI47_11935	0.75	-2.2
2,526,557	+		IAI47_11935	0.75	-2.2
2,526,557	+		IAI47_11935	0.75	-1.6
2,526,557	+		IAI47_11935	0.75	-2.6
2,526,557	+		IAI47_11935	0.75	-0.9
2,526,558	-		IAI47_11935	0.75	-3.9
2,526,558	-		IAI47_11935	0.75	-1.6
2,526,558	-		IAI47_11935	0.75	-4.3
2,526,558	-		IAI47_11935	0.75	-2.9
2,526,558	-		IAI47_11935	0.75	-3.0
2,526,558	-		IAI47_11935	0.75	-1.6
2,526,558	-		IAI47_11935	0.75	-2.6
2,526,559	+		IAI47_11935	0.75	-0.8
2,526,559	+		IAI47_11935	0.75	-2.6
2,526,559	+		IAI47_11935	0.75	-2.0
2,526,560	-		IAI47_11935	0.75	-2.6
2,526,560	-		IAI47_11935	0.75	+0.6
2,526,560	-		IAI47_11935	0.75	-1.3
2,526,599	+		IAI47_11935	0.78	-1.7
2,526,639	+		IAI47_11935	0.80	-2.2
2,526,639	+		IAI47_11935	0.80	-3.7
2,526,640	-		IAI47_11935	0.81	-3.4
2,526,658	-		IAI47_11935	0.82	-1.0
2,526,669	+		IAI47_11935	0.83	-2.4
2,526,669	+		IAI47_11935	0.83	-2.6
2,526,670	-		IAI47_11935	0.83	-2.2
2,526,696	+		IAI47_11935	0.84	-1.0
2,526,696	+		IAI47_11935	0.84	-2.4
2,526,696	+		IAI47_11935	0.84	-2.7
2,526,696	+		IAI47_11935	0.84	-1.0
2,526,696	+		IAI47_11935	0.84	-1.0
2,526,696	+		IAI47_11935	0.84	-2.4
2,526,696	+		IAI47_11935	0.84	-2.3
2,526,696	+		IAI47_11935	0.84	-2.7
2,526,696	+		IAI47_11935	0.84	-2.6
2,526,696	+		IAI47_11935	0.84	-2.2
2,526,697	-		IAI47_11935	0.84	-2.7
2,526,697	-		IAI47_11935	0.84	-2.0
2,526,697	-		IAI47_11935	0.84	-2.9
2,526,697	-		IAI47_11935	0.84	-2.4
2,526,697	-				-1.0
2,526,697	-		IAI47_11935	0.84	-2.4
2,526,697	-		IAI47_11935	0.84	+0.6
2,526,699	-		IAI47_11935	0.85	-2.7
2,526,828	+				-2.6
2,526,828	+				-1.7
2,526,828	+				-3.0
2,526,829	-				-1.4
2,526,829	-				-2.6
2,526,829	-				-0.7
2,526,829	-				-1.0
2,526,829	-				-1.5
2,526,883	+				-2.0
2,526,943	+				+0.2
2,526,943	+				-0.4
2,526,943	+				+1.0
2,526,944	-				+2.2
2,526,944	-				+0.4
2,526,944	-				-0.4
2,526,957	+				-0.4
2,526,957	+				-0.7
2,526,958	-				+0.3
2,526,980	+				+0.6
2,526,980	+				-0.3
2,526,981	-				+0.7
2,526,981	-				-0.3
2,526,987	+				-1.4
2,526,987	+				+0.3
2,526,987	+				-0.4
2,526,987	+				+0.6
2,526,987	+				-0.1
2,526,988	-				-0.1
2,526,999	-				+0.5
2,527,001	+				-0.4
2,527,001	+				+0.0
2,527,001	+				+0.3
2,527,001	+				+0.2
2,527,002	-				-0.4
2,527,002	-				+0.0
2,527,026	+				+0.9
2,527,027	-				+0.4
2,527,191	+		IAI47_11940	0.19	-0.1
2,527,191	+		IAI47_11940	0.19	+1.3
2,527,191	+		IAI47_11940	0.19	+0.4
2,527,191	+		IAI47_11940	0.19	+0.2
2,527,191	+		IAI47_11940	0.19	-0.7
2,527,191	+		IAI47_11940	0.19	+0.9
2,527,191	+		IAI47_11940	0.19	+0.1
2,527,192	-		IAI47_11940	0.19	-0.3
2,527,192	-		IAI47_11940	0.19	+2.0
2,527,192	-		IAI47_11940	0.19	-0.1
2,527,192	-		IAI47_11940	0.19	+0.4
2,527,192	-		IAI47_11940	0.19	-0.2
2,527,192	-		IAI47_11940	0.19	-1.6
2,527,192	-		IAI47_11940	0.19	+0.2
2,527,318	+		IAI47_11940	0.30	+0.9
2,527,318	+		IAI47_11940	0.30	+0.2
2,527,318	+		IAI47_11940	0.30	+1.5
2,527,318	+		IAI47_11940	0.30	+0.4
2,527,319	-		IAI47_11940	0.30	-0.1
2,527,365	+		IAI47_11940	0.34	-0.8
2,527,365	+		IAI47_11940	0.34	-0.2
2,527,365	+		IAI47_11940	0.34	+0.4
2,527,365	+		IAI47_11940	0.34	-0.1
2,527,365	+		IAI47_11940	0.34	+1.2
2,527,366	-		IAI47_11940	0.34	+0.4
2,527,366	-		IAI47_11940	0.34	-1.1
2,527,366	-		IAI47_11940	0.34	+1.1
2,527,366	-		IAI47_11940	0.34	-1.0
2,527,366	-		IAI47_11940	0.34	+1.6
2,527,366	-		IAI47_11940	0.34	-1.0
2,527,366	-		IAI47_11940	0.34	+1.0
2,527,372	+		IAI47_11940	0.35	+0.6
2,527,372	+		IAI47_11940	0.35	+0.0
2,527,372	+		IAI47_11940	0.35	+0.7
2,527,372	+		IAI47_11940	0.35	+0.1
2,527,373	-		IAI47_11940	0.35	+0.2
2,527,373	-		IAI47_11940	0.35	-1.0
2,527,376	+		IAI47_11940	0.35	-1.1
2,527,376	+		IAI47_11940	0.35	+0.1
2,527,376	+		IAI47_11940	0.35	-1.1
2,527,376	+		IAI47_11940	0.35	+0.4
2,527,377	-		IAI47_11940	0.35	-0.1
2,527,518	+		IAI47_11940	0.48	+0.6
2,527,518	+		IAI47_11940	0.48	+0.6
2,527,518	+		IAI47_11940	0.48	-0.9
2,527,518	+		IAI47_11940	0.48	+1.3
2,527,518	+		IAI47_11940	0.48	-0.1
2,527,518	+		IAI47_11940	0.48	-0.4
2,527,519	-		IAI47_11940	0.48	-0.3
2,527,519	-		IAI47_11940	0.48	-0.1
2,527,519	-		IAI47_11940	0.48	-1.7
2,527,519	-		IAI47_11940	0.48	-1.0
2,527,519	-		IAI47_11940	0.48	-1.2
2,527,519	-		IAI47_11940	0.48	+0.3
2,527,548	+		IAI47_11940	0.50	+0.0
2,527,548	+		IAI47_11940	0.50	+0.8
2,527,572	+		IAI47_11940	0.52	+0.3
2,527,573	-		IAI47_11940	0.52	+0.9
2,527,573	-		IAI47_11940	0.52	+0.2
2,527,573	-		IAI47_11940	0.52	-0.1
2,527,609	+		IAI47_11940	0.56	+0.4
2,527,609	+		IAI47_11940	0.56	+1.1
2,527,610	-		IAI47_11940	0.56	+0.8
2,527,610	-		IAI47_11940	0.56	+1.1
2,527,610	-		IAI47_11940	0.56	-0.5
2,527,610	-		IAI47_11940	0.56	+0.9
2,527,613	+		IAI47_11940	0.56	+0.0
2,527,629	+		IAI47_11940	0.57	-1.4
2,527,664	+		IAI47_11940	0.61	-0.5
2,527,664	+		IAI47_11940	0.61	+0.4
2,527,665	-		IAI47_11940	0.61	+0.0
2,527,842	+		IAI47_11940	0.76	+0.7
2,527,860	+		IAI47_11940	0.78	+1.4
2,527,897	+		IAI47_11940	0.81	+0.2
2,527,898	-		IAI47_11940	0.81	-1.0
2,527,898	-		IAI47_11940	0.81	+0.4