Strain Fitness in Pantoea sp. MT58 around IAI47_10895

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,298,912	+		IAI47_10890	0.75	-0.2
2,298,941	+		IAI47_10890	0.76	+0.4
2,298,942	-		IAI47_10890	0.76	+0.6
2,299,025	+		IAI47_10890	0.79	-0.9
2,299,025	+		IAI47_10890	0.79	-1.5
2,299,092	+		IAI47_10890	0.81	-0.3
2,299,092	+		IAI47_10890	0.81	-0.0
2,299,093	-		IAI47_10890	0.81	+1.5
2,299,093	-		IAI47_10890	0.81	-0.9
2,299,101	+		IAI47_10890	0.81	+0.2
2,299,188	+		IAI47_10890	0.84	-1.3
2,299,188	+		IAI47_10890	0.84	-1.5
2,299,189	-		IAI47_10890	0.84	-1.4
2,299,219	-		IAI47_10890	0.85	-1.4
2,299,229	-		IAI47_10890	0.86	-0.6
2,299,285	-		IAI47_10890	0.88	-2.0
2,299,285	-		IAI47_10890	0.88	-0.4
2,299,285	-		IAI47_10890	0.88	+0.1
2,299,285	-		IAI47_10890	0.88	-0.1
2,299,324	-		IAI47_10890	0.89	-2.8
2,299,327	-		IAI47_10890	0.89	-0.4
2,299,327	-		IAI47_10890	0.89	-1.2
2,299,327	-		IAI47_10890	0.89	-1.1
2,299,349	+		IAI47_10890	0.90	-1.2
2,299,349	+		IAI47_10890	0.90	-1.0
2,299,349	+		IAI47_10890	0.90	+0.9
2,299,350	-		IAI47_10890	0.90	+0.6
2,299,359	+		IAI47_10890	0.90	-1.0
2,299,359	+		IAI47_10890	0.90	-1.0
2,299,359	+		IAI47_10890	0.90	-1.0
2,299,359	+		IAI47_10890	0.90	-0.4
2,299,360	-				-0.7
2,299,360	-				-1.1
2,299,360	-				-2.0
2,299,360	-				+1.2
2,299,360	-				-1.6
2,299,360	-				-0.3
2,299,360	-				-1.1
2,299,360	-				-0.1
2,299,360	-				+0.2
2,299,360	-				+0.2
2,299,523	+				+0.4
2,299,523	+				-1.0
2,299,523	+				+1.3
2,299,524	-				-1.8
2,299,524	-				-1.3
2,299,533	+				-1.6
2,299,562	+				-0.1
2,299,562	+				-1.3
2,299,562	+				+0.2
2,299,562	+				-2.0
2,299,562	+				-0.8
2,299,562	+				-1.1
2,299,563	-				-1.7
2,299,584	+				+0.2
2,299,688	+				-1.5
2,299,689	-				+0.1
2,299,703	-				-1.7
2,299,704	+				+0.0
2,299,705	-				-0.7
2,299,705	-				+1.3
2,299,725	+				-0.8
2,299,730	+				-0.4
2,299,731	-				-0.1
2,299,792	-				-0.3
2,299,792	-				-0.4
2,299,805	+				+4.0
2,299,805	+				+1.2
2,299,806	-				+0.2
2,299,815	+				+0.6
2,299,816	-				-0.7
2,299,851	+				+0.2
2,299,852	-				+1.4
2,299,852	-				+1.2
2,299,862	+				-0.3
2,299,862	+				+0.6
2,299,895	-				+0.6
2,299,903	-				+0.0
2,299,911	+				-0.4
2,299,911	+				+1.6
2,299,911	+				+0.6
2,299,912	-				+0.6
2,299,912	-				+0.6
2,299,912	-				+1.6
2,299,956	+				-0.3
2,299,976	-				-0.2
2,300,004	+		IAI47_10895	0.12	-0.3
2,300,005	-		IAI47_10895	0.12	-0.4
2,300,049	+		IAI47_10895	0.16	-0.5
2,300,100	+		IAI47_10895	0.20	+1.3
2,300,100	+		IAI47_10895	0.20	+2.5
2,300,101	-		IAI47_10895	0.20	+1.6
2,300,101	-		IAI47_10895	0.20	-0.5
2,300,101	-		IAI47_10895	0.20	-0.8
2,300,101	-		IAI47_10895	0.20	-0.5
2,300,101	-		IAI47_10895	0.20	-0.4
2,300,107	+		IAI47_10895	0.21	+0.0
2,300,108	-				-2.7
2,300,108	-		IAI47_10895	0.21	-0.4
2,300,110	+		IAI47_10895	0.21	+1.2
2,300,110	+		IAI47_10895	0.21	-1.0
2,300,110	+		IAI47_10895	0.21	-0.2
2,300,111	-		IAI47_10895	0.21	+0.6
2,300,111	-		IAI47_10895	0.21	-1.4
2,300,231	-		IAI47_10895	0.32	+1.0
2,300,240	+		IAI47_10895	0.33	-0.2
2,300,241	-		IAI47_10895	0.33	+0.4
2,300,241	-		IAI47_10895	0.33	-0.7
2,300,241	-		IAI47_10895	0.33	+1.6
2,300,241	-		IAI47_10895	0.33	-0.3
2,300,249	+		IAI47_10895	0.34	-0.1
2,300,249	+		IAI47_10895	0.34	-0.4
2,300,249	+		IAI47_10895	0.34	-0.1
2,300,250	-		IAI47_10895	0.34	-0.7
2,300,250	-		IAI47_10895	0.34	+1.0
2,300,295	+		IAI47_10895	0.38	+0.6
2,300,296	-		IAI47_10895	0.38	+0.3
2,300,303	+		IAI47_10895	0.38	+1.1
2,300,303	+		IAI47_10895	0.38	+1.1
2,300,303	+		IAI47_10895	0.38	+0.7
2,300,303	+		IAI47_10895	0.38	-0.3
2,300,303	+		IAI47_10895	0.38	+2.2
2,300,303	+		IAI47_10895	0.38	+1.0
2,300,303	+		IAI47_10895	0.38	+1.6
2,300,303	+		IAI47_10895	0.38	-0.5
2,300,303	+		IAI47_10895	0.38	-0.7
2,300,303	+		IAI47_10895	0.38	-0.2
2,300,303	+		IAI47_10895	0.38	-1.4
2,300,303	+		IAI47_10895	0.38	-0.9
2,300,303	+		IAI47_10895	0.38	-0.3
2,300,304	-		IAI47_10895	0.39	-0.6
2,300,304	-		IAI47_10895	0.39	+1.5
2,300,304	-				+0.7
2,300,304	-		IAI47_10895	0.39	-1.1
2,300,304	-		IAI47_10895	0.39	-0.5
2,300,304	-		IAI47_10895	0.39	+0.6
2,300,304	-		IAI47_10895	0.39	+0.1
2,300,304	-		IAI47_10895	0.39	-0.1
2,300,304	-		IAI47_10895	0.39	+0.2
2,300,382	+		IAI47_10895	0.46	-2.0
2,300,382	+		IAI47_10895	0.46	+1.1
2,300,383	-		IAI47_10895	0.46	-0.4
2,300,383	-		IAI47_10895	0.46	-0.5
2,300,383	-		IAI47_10895	0.46	+1.2
2,300,383	-		IAI47_10895	0.46	+1.0
2,300,383	-		IAI47_10895	0.46	-0.3
2,300,403	-		IAI47_10895	0.47	+1.2
2,300,588	+		IAI47_10895	0.64	-1.0
2,300,589	-		IAI47_10895	0.64	+0.6
2,300,601	+		IAI47_10895	0.65	-0.2
2,300,602	-		IAI47_10895	0.65	-0.4
2,300,607	+		IAI47_10895	0.66	+0.0
2,300,608	-		IAI47_10895	0.66	+0.0
2,300,631	+		IAI47_10895	0.68	-1.4
2,300,631	+		IAI47_10895	0.68	-0.4
2,300,631	+		IAI47_10895	0.68	-0.3
2,300,631	+		IAI47_10895	0.68	+0.5
2,300,632	-		IAI47_10895	0.68	-0.4
2,300,632	-		IAI47_10895	0.68	+0.3
2,300,632	-		IAI47_10895	0.68	-0.5
2,300,672	+		IAI47_10895	0.72	+0.7
2,300,672	+		IAI47_10895	0.72	-0.3
2,300,672	+		IAI47_10895	0.72	+0.1
2,300,672	+		IAI47_10895	0.72	-0.5
2,300,672	+		IAI47_10895	0.72	+0.1
2,300,672	+		IAI47_10895	0.72	+0.3
2,300,672	+		IAI47_10895	0.72	+0.1
2,300,672	+		IAI47_10895	0.72	-0.5
2,300,673	-		IAI47_10895	0.72	-1.7
2,300,673	-		IAI47_10895	0.72	+1.6
2,300,673	-		IAI47_10895	0.72	+1.4
2,300,678	+		IAI47_10895	0.72	+0.1
2,300,693	-		IAI47_10895	0.73	-1.4
2,300,766	+		IAI47_10895	0.80	-1.0
2,300,766	+		IAI47_10895	0.80	+0.1
2,300,767	-		IAI47_10895	0.80	-1.6
2,300,774	-		IAI47_10895	0.81	-0.3
2,300,904	+				+0.1
2,300,904	+				+1.7
2,300,904	+				-0.5
2,300,904	+				+0.6
2,300,904	+				+0.2
2,300,905	-				-0.8
2,300,985	+				-1.0
2,300,985	+				-0.4
2,300,985	+				-1.0
2,300,985	+				-0.0
2,300,985	+				+0.5
2,300,985	+				-1.3
2,300,985	+				-1.0
2,300,985	+				+0.0
2,300,986	-				+0.1
2,300,986	-				+1.2
2,300,986	-				-0.3
2,300,986	-				+0.1
2,300,987	+				+0.6
2,300,987	+				+1.1
2,300,987	+				+0.6
2,300,987	+				+0.0
2,300,988	-				+1.7
2,300,988	-				-1.0
2,300,988	-				-0.5
2,301,027	+				-1.9
2,301,027	+				-1.0
2,301,028	-				+0.0
2,301,028	-				-0.3
2,301,028	-				-0.9
2,301,028	-				-0.6
2,301,036	+				-1.0
2,301,036	+				-0.2
2,301,182	-				+0.9
2,301,198	+				-0.1
2,301,199	-				+0.6
2,301,224	+				+0.4
2,301,229	+				+0.7
2,301,229	+				-1.0
2,301,230	-				-1.0
2,301,230	-				-0.4
2,301,318	+				+0.6
2,301,318	+				+0.5
2,301,318	+				+0.3
2,301,318	+				-0.4
2,301,330	+				+0.3
2,301,396	+				+1.4
2,301,405	+				-0.1
2,301,405	+				-0.1
2,301,405	+				-0.6
2,301,405	+				-0.1
2,301,406	-				+1.1
2,301,406	-				+0.1
2,301,407	+				-1.0
2,301,408	-				-3.0
2,301,408	-				-1.4
2,301,408	-				+1.3
2,301,412	-				+0.6
2,301,437	+				-0.6
2,301,437	+				-0.7
2,301,437	+				-0.9
2,301,437	+				+0.2
2,301,438	-				-1.0
2,301,438	-				-1.0
2,301,438	-				-1.3
2,301,438	-				+0.4
2,301,446	+				-0.4
2,301,446	+				-1.4
2,301,446	+				+0.6
2,301,446	+				+0.0
2,301,447	-				+0.1
2,301,447	-				-3.0
2,301,447	-				+0.2
2,301,447	-				-0.3
2,301,504	-				-1.9
2,301,603	+				-0.3
2,301,603	+				-1.2
2,301,603	+				+1.5
2,301,603	+				+1.2
2,301,604	-				-1.0
2,301,604	-				-0.1
2,301,604	-				-0.2
2,301,604	-				+0.0
2,301,604	-				+0.3
2,301,607	+				+0.2
2,301,607	+				-0.4
2,301,607	+				+1.6
2,301,607	+				+0.5
2,301,607	+				-1.1
2,301,607	+				-0.1
2,301,607	+				+0.0
2,301,608	-				-3.0
2,301,608	-				-0.3
2,301,608	-				-0.8
2,301,608	-				+1.8
2,301,608	-				+0.1
2,301,664	+				+0.3
2,301,664	+				+0.2
2,301,664	+				+2.6
2,301,736	+		IAI47_10905	0.12	-0.5
2,301,737	-		IAI47_10905	0.12	-0.4
2,301,737	-		IAI47_10905	0.12	-0.6
2,301,785	+		IAI47_10905	0.14	-0.5
2,301,786	-		IAI47_10905	0.14	-0.6
2,301,928	+		IAI47_10905	0.20	-0.1