Strain Fitness in Pantoea sp. MT58 around IAI47_08835

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,865,845	+				-1.3
1,865,845	+				-0.7
1,865,845	+				-1.2
1,865,877	-				-0.2
1,865,903	+				-1.0
1,865,903	+				-0.1
1,865,903	+				+0.1
1,865,903	+				+1.0
1,865,903	+				+0.7
1,865,903	+				-0.8
1,865,903	+				+1.1
1,865,904	-				+0.9
1,865,904	-				+0.1
1,865,909	+				+0.1
1,865,909	+				-0.2
1,865,910	-				+0.7
1,865,910	-				+0.2
1,865,910	-				-0.3
1,865,910	-				+0.4
1,865,910	-				+0.4
1,865,922	+				-0.1
1,865,923	-				-0.9
1,865,923	-				+0.2
1,865,923	-				+0.3
1,865,934	+				-0.9
1,865,935	-				-1.0
1,865,949	+				-0.2
1,865,949	+				-1.2
1,865,949	+				+0.7
1,865,949	+				+0.4
1,865,950	-				-1.0
1,865,950	-				-0.0
1,865,950	-				-1.9
1,865,950	-				-0.7
1,865,950	-				+0.6
1,865,967	+				-1.1
1,865,967	+				+1.1
1,866,148	-		IAI47_08830	0.33	-0.5
1,866,241	+		IAI47_08830	0.49	-0.3
1,866,242	-		IAI47_08830	0.49	-0.9
1,866,242	-		IAI47_08830	0.49	+0.4
1,866,242	-		IAI47_08830	0.49	+0.7
1,866,289	+		IAI47_08830	0.57	-0.2
1,866,289	+		IAI47_08830	0.57	-0.5
1,866,289	+		IAI47_08830	0.57	-0.3
1,866,290	-		IAI47_08830	0.57	+1.5
1,866,290	-		IAI47_08830	0.57	-0.5
1,866,290	-		IAI47_08830	0.57	+1.0
1,866,290	-		IAI47_08830	0.57	+0.7
1,866,290	-		IAI47_08830	0.57	+0.1
1,866,290	-		IAI47_08830	0.57	+1.2
1,866,290	-		IAI47_08830	0.57	-0.3
1,866,290	-		IAI47_08830	0.57	-0.3
1,866,371	+		IAI47_08830	0.71	-0.6
1,866,371	+		IAI47_08830	0.71	-0.3
1,866,379	+		IAI47_08830	0.72	+0.2
1,866,408	-		IAI47_08830	0.77	+0.9
1,866,445	+		IAI47_08830	0.83	-0.7
1,866,445	+		IAI47_08830	0.83	-0.6
1,866,445	+		IAI47_08830	0.83	-1.2
1,866,446	-		IAI47_08830	0.83	+0.5
1,866,472	+		IAI47_08830	0.87	+0.2
1,866,498	+				-0.3
1,866,498	+				+0.1
1,866,499	-				-1.3
1,866,505	-				-0.3
1,866,505	-				-0.2
1,866,533	+				-0.8
1,866,533	+				-0.1
1,866,533	+				-0.3
1,866,534	-				-0.2
1,866,599	+				+0.7
1,866,600	-				+0.7
1,866,600	-				-0.3
1,866,628	-				-1.1
1,866,728	+				-0.3
1,866,728	+				-1.8
1,866,728	+				-1.5
1,866,728	+				+0.6
1,866,728	+				+0.2
1,866,728	+				+0.8
1,866,729	-				-0.8
1,866,729	-				-0.8
1,866,729	-				-1.0
1,866,729	-				-1.8
1,866,729	-				-0.0
1,866,735	+				+0.4
1,866,735	+				+1.2
1,866,735	+				-0.5
1,866,735	+				+1.0
1,866,735	+				-0.6
1,866,735	+				+0.1
1,866,736	-				-1.2
1,866,736	-				-1.4
1,866,736	-				-0.7
1,866,736	-				-1.9
1,866,736	-				-0.6
1,866,736	-				-0.6
1,866,759	+				+1.2
1,866,759	+				-1.9
1,866,759	+				-0.8
1,866,760	-				+1.0
1,866,760	-				-0.7
1,866,803	+				+0.3
1,866,803	+				-1.0
1,866,804	-				-0.9
1,866,804	-				-1.3
1,866,804	-				-1.3
1,866,817	+				-0.6
1,866,818	-				-0.2
1,866,818	-				-1.9
1,866,818	-				-0.5
1,866,860	-				-0.5
1,866,880	-				+0.8
1,866,881	+				-1.3
1,866,881	+				-0.0
1,866,881	+				-1.8
1,866,904	+				-0.2
1,866,904	+				-0.6
1,866,904	+				+0.7
1,866,905	-				+0.2
1,866,905	-				-0.3
1,866,943	+		IAI47_08835	0.11	-0.9
1,866,943	+		IAI47_08835	0.11	-2.5
1,866,943	+		IAI47_08835	0.11	+0.4
1,866,999	+		IAI47_08835	0.15	-0.7
1,866,999	+		IAI47_08835	0.15	-0.9
1,867,000	-		IAI47_08835	0.15	-1.9
1,867,000	-		IAI47_08835	0.15	-0.8
1,867,000	-		IAI47_08835	0.15	-0.8
1,867,000	-		IAI47_08835	0.15	+0.1
1,867,004	+		IAI47_08835	0.15	+0.1
1,867,004	+		IAI47_08835	0.15	-0.2
1,867,004	+		IAI47_08835	0.15	+0.1
1,867,004	+		IAI47_08835	0.15	-2.5
1,867,005	-		IAI47_08835	0.15	+0.5
1,867,005	-		IAI47_08835	0.15	-1.3
1,867,005	-		IAI47_08835	0.15	+0.3
1,867,065	+		IAI47_08835	0.19	-1.0
1,867,075	+		IAI47_08835	0.19	+0.7
1,867,076	-		IAI47_08835	0.19	-2.3
1,867,076	-		IAI47_08835	0.19	+0.0
1,867,076	-		IAI47_08835	0.19	+0.3
1,867,077	+		IAI47_08835	0.19	+0.7
1,867,077	+		IAI47_08835	0.19	-1.1
1,867,077	+		IAI47_08835	0.19	-1.0
1,867,077	+		IAI47_08835	0.19	+0.0
1,867,078	-		IAI47_08835	0.19	-0.2
1,867,078	-		IAI47_08835	0.19	-0.3
1,867,078	-		IAI47_08835	0.19	-1.3
1,867,229	+		IAI47_08835	0.28	-0.9
1,867,245	+		IAI47_08835	0.29	-0.3
1,867,246	-		IAI47_08835	0.29	+0.1
1,867,251	+		IAI47_08835	0.30	-1.5
1,867,261	+		IAI47_08835	0.30	+0.4
1,867,261	+		IAI47_08835	0.30	+0.2
1,867,261	+		IAI47_08835	0.30	+1.8
1,867,261	+		IAI47_08835	0.30	+0.8
1,867,261	+		IAI47_08835	0.30	-0.2
1,867,261	+		IAI47_08835	0.30	-1.4
1,867,262	-		IAI47_08835	0.30	-0.3
1,867,262	-		IAI47_08835	0.30	-0.8
1,867,281	+		IAI47_08835	0.31	+0.4
1,867,281	+		IAI47_08835	0.31	-1.4
1,867,281	+		IAI47_08835	0.31	-0.7
1,867,281	+		IAI47_08835	0.31	-0.2
1,867,281	+		IAI47_08835	0.31	-1.2
1,867,282	-		IAI47_08835	0.31	-0.3
1,867,282	-		IAI47_08835	0.31	-0.6
1,867,282	-		IAI47_08835	0.31	-0.3
1,867,285	+		IAI47_08835	0.32	-1.3
1,867,285	+		IAI47_08835	0.32	-0.8
1,867,285	+		IAI47_08835	0.32	-0.2
1,867,285	+		IAI47_08835	0.32	+0.1
1,867,285	+		IAI47_08835	0.32	+0.7
1,867,285	+		IAI47_08835	0.32	-1.2
1,867,286	-		IAI47_08835	0.32	+0.1
1,867,286	-		IAI47_08835	0.32	+1.0
1,867,286	-		IAI47_08835	0.32	-0.9
1,867,286	-		IAI47_08835	0.32	+0.4
1,867,286	-		IAI47_08835	0.32	-2.4
1,867,345	+		IAI47_08835	0.35	-0.2
1,867,390	+		IAI47_08835	0.38	-0.3
1,867,391	-		IAI47_08835	0.38	-0.2
1,867,412	+		IAI47_08835	0.39	-0.2
1,867,478	-		IAI47_08835	0.43	-0.0
1,867,531	+		IAI47_08835	0.46	-0.8
1,867,531	+		IAI47_08835	0.46	+0.7
1,867,532	-		IAI47_08835	0.46	+0.2
1,867,547	+		IAI47_08835	0.47	-0.7
1,867,548	-		IAI47_08835	0.47	-0.7
1,867,548	-		IAI47_08835	0.47	-1.2
1,867,614	+		IAI47_08835	0.51	+1.1
1,867,614	+		IAI47_08835	0.51	+0.2
1,867,615	-		IAI47_08835	0.51	-0.2
1,867,642	-		IAI47_08835	0.53	+0.4
1,867,714	-		IAI47_08835	0.57	+0.2
1,867,796	+		IAI47_08835	0.62	+0.2
1,867,807	+		IAI47_08835	0.63	-1.0
1,867,807	+		IAI47_08835	0.63	-1.3
1,867,807	+		IAI47_08835	0.63	+0.7
1,867,822	+		IAI47_08835	0.64	-1.2
1,867,864	+		IAI47_08835	0.66	-1.0
1,867,865	-		IAI47_08835	0.66	+0.4
1,867,865	-		IAI47_08835	0.66	-1.0
1,867,882	-		IAI47_08835	0.67	+0.7
1,868,006	-		IAI47_08835	0.75	-0.8
1,868,067	+		IAI47_08835	0.78	-0.2
1,868,067	+		IAI47_08835	0.78	-0.2
1,868,068	-		IAI47_08835	0.78	-1.0
1,868,073	+		IAI47_08835	0.79	-0.2
1,868,074	-		IAI47_08835	0.79	+0.1
1,868,121	+		IAI47_08835	0.82	-0.5
1,868,121	+		IAI47_08835	0.82	-0.6
1,868,142	+		IAI47_08835	0.83	-0.1
1,868,142	+		IAI47_08835	0.83	-1.3
1,868,142	+		IAI47_08835	0.83	+0.3
1,868,142	+		IAI47_08835	0.83	+0.1
1,868,143	-		IAI47_08835	0.83	-0.9
1,868,143	-		IAI47_08835	0.83	-1.0
1,868,143	-		IAI47_08835	0.83	+0.4
1,868,144	-		IAI47_08835	0.83	-1.8
1,868,149	+		IAI47_08835	0.83	-0.0
1,868,149	+		IAI47_08835	0.83	+0.7
1,868,150	-		IAI47_08835	0.83	-0.7
1,868,187	+		IAI47_08835	0.85	-0.9
1,868,188	-		IAI47_08835	0.86	-0.2
1,868,188	-		IAI47_08835	0.86	+1.7
1,868,188	-		IAI47_08835	0.86	+0.0
1,868,244	-		IAI47_08835	0.89	-1.3
1,868,244	-		IAI47_08835	0.89	+0.9
1,868,253	+		IAI47_08835	0.89	-2.3
1,868,280	+				-0.3
1,868,281	-				-1.3
1,868,281	-				-0.1
1,868,323	+				-1.2
1,868,324	-				+0.5
1,868,324	-				-0.7
1,868,476	-				-1.7
1,868,507	+				-1.1
1,868,507	+				-0.6
1,868,507	+				-0.0
1,868,508	-				+1.4
1,868,508	-				-0.7
1,868,508	-				-1.8
1,868,508	-				+0.4
1,868,508	-				+1.2
1,868,534	+				-0.2
1,868,534	+				-0.2
1,868,534	+				-0.1
1,868,535	-				-0.1
1,868,535	-				+0.6
1,868,535	-				+1.3
1,868,535	-				-0.2
1,868,535	-				-0.6
1,868,535	-				+0.2
1,868,535	-				-0.6
1,868,542	+				+0.3
1,868,632	+				+0.5
1,868,632	+				+0.6
1,868,632	+				+1.1
1,868,632	+				-0.1
1,868,633	-				-0.2
1,868,636	+				+1.2
1,868,636	+				+2.3
1,868,636	+				+1.4
1,868,636	+				+1.2
1,868,636	+				+1.6
1,868,636	+				-1.2
1,868,636	+				+0.2
1,868,636	+				+0.0
1,868,636	+				-0.6
1,868,636	+				+0.6
1,868,636	+				+0.1
1,868,636	+				-0.1
1,868,636	+				+0.4
1,868,637	-				+1.4
1,868,637	-				-0.6
1,868,637	-				+0.5
1,868,637	-				+0.0
1,868,637	-				+0.5
1,868,637	-				+0.7
1,868,637	-				-1.2
1,868,637	-				-1.4
1,868,637	-				-0.5
1,868,637	-				+1.0
1,868,637	-				+0.2
1,868,637	-				-0.4
1,868,639	+				+0.5
1,868,640	-				+0.1
1,868,640	-				+0.3
1,868,640	-				-0.0
1,868,640	-				-1.1
1,868,704	+		IAI47_08840	0.16	-1.4
1,868,705	-		IAI47_08840	0.16	-1.7
1,868,705	-		IAI47_08840	0.16	-0.5
1,868,725	+		IAI47_08840	0.18	+0.4
1,868,726	-		IAI47_08840	0.18	-0.5
1,868,726	-		IAI47_08840	0.18	+0.5
1,868,726	-		IAI47_08840	0.18	+0.2
1,868,726	-		IAI47_08840	0.18	+0.6
1,868,726	-		IAI47_08840	0.18	+0.6
1,868,833	+		IAI47_08840	0.27	+0.3
1,868,834	-		IAI47_08840	0.27	+0.1
1,868,834	-		IAI47_08840	0.27	+0.6
1,868,978	+		IAI47_08840	0.40	-0.8
1,868,999	+		IAI47_08840	0.42	-0.2
1,868,999	+		IAI47_08840	0.42	-0.4
1,869,000	-		IAI47_08840	0.42	-0.9
1,869,000	-		IAI47_08840	0.42	+1.9
1,869,232	+		IAI47_08840	0.63	+0.5
1,869,277	+		IAI47_08840	0.67	+0.4
1,869,278	-		IAI47_08840	0.67	-0.8
1,869,278	-		IAI47_08840	0.67	-0.5
1,869,278	-		IAI47_08840	0.67	+1.4