Strain Fitness in Pantoea sp. MT58 around IAI47_06815

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,421,448	-		IAI47_06805	0.83	-0.1
1,421,448	-		IAI47_06805	0.83	-0.3
1,421,448	-		IAI47_06805	0.83	+1.7
1,421,541	+				-0.6
1,421,542	-				+0.7
1,421,584	+				-1.7
1,421,584	+				-0.6
1,421,584	+				-1.0
1,421,585	-				-1.5
1,421,669	+		IAI47_06810	0.12	-3.2
1,421,669	+		IAI47_06810	0.12	-1.5
1,421,686	-		IAI47_06810	0.14	-3.6
1,421,832	+		IAI47_06810	0.32	-1.8
1,421,832	+		IAI47_06810	0.32	-1.8
1,421,832	+		IAI47_06810	0.32	-0.6
1,421,832	+		IAI47_06810	0.32	-0.1
1,421,832	+		IAI47_06810	0.32	-0.7
1,421,833	-		IAI47_06810	0.32	-1.3
1,421,833	-		IAI47_06810	0.32	-0.7
1,421,833	-		IAI47_06810	0.32	-1.3
1,421,833	-		IAI47_06810	0.32	-1.0
1,421,880	+		IAI47_06810	0.38	-1.3
1,421,880	+		IAI47_06810	0.38	-2.5
1,421,880	+		IAI47_06810	0.38	-0.8
1,421,881	-		IAI47_06810	0.38	-1.3
1,421,887	+		IAI47_06810	0.39	-0.1
1,421,946	+		IAI47_06810	0.47	-0.7
1,421,946	+		IAI47_06810	0.47	-1.5
1,421,946	+		IAI47_06810	0.47	-1.6
1,421,946	+		IAI47_06810	0.47	-1.5
1,421,947	-		IAI47_06810	0.47	+1.7
1,421,947	-		IAI47_06810	0.47	-1.5
1,422,112	+		IAI47_06810	0.67	-0.8
1,422,113	-		IAI47_06810	0.67	-3.3
1,422,229	-		IAI47_06810	0.82	-1.8
1,422,291	+		IAI47_06810	0.90	-1.0
1,422,306	+				-0.9
1,422,307	-				-1.2
1,422,316	+				-1.1
1,422,317	-				-0.5
1,422,317	-				-1.7
1,422,317	-				-0.9
1,422,426	+				+0.3
1,422,426	+				-1.2
1,422,451	+				-0.0
1,422,452	-				+0.1
1,422,452	-				-0.4
1,422,452	-				+0.8
1,422,452	-				+0.3
1,422,712	+		IAI47_06815	0.42	-1.6
1,422,713	-		IAI47_06815	0.42	-0.3
1,422,713	-		IAI47_06815	0.42	-0.4
1,422,766	+		IAI47_06815	0.50	-0.8
1,422,766	+		IAI47_06815	0.50	+0.9
1,422,766	+		IAI47_06815	0.50	-2.9
1,422,767	-		IAI47_06815	0.50	-0.9
1,422,797	+		IAI47_06815	0.54	-0.7
1,422,798	-		IAI47_06815	0.54	-1.1
1,422,798	-		IAI47_06815	0.54	-0.5
1,422,847	+		IAI47_06815	0.61	-0.8
1,422,912	-		IAI47_06815	0.71	+1.1
1,422,912	-		IAI47_06815	0.71	-0.3
1,422,912	-		IAI47_06815	0.71	-0.1
1,422,912	-		IAI47_06815	0.71	-0.6
1,422,917	+		IAI47_06815	0.72	-0.7
1,422,917	+		IAI47_06815	0.72	-0.5
1,423,039	+		IAI47_06815	0.89	-0.1
1,423,039	+		IAI47_06815	0.89	-0.3
1,423,039	+		IAI47_06815	0.89	-0.1
1,423,040	-		IAI47_06815	0.90	-0.3
1,423,040	-		IAI47_06815	0.90	+0.4
1,423,040	-		IAI47_06815	0.90	-0.4
1,423,040	-		IAI47_06815	0.90	+0.7
1,423,040	-		IAI47_06815	0.90	-0.1
1,423,060	-				-0.6
1,423,060	-				-0.5
1,423,073	+				+0.2
1,423,097	-				-1.3
1,423,097	-				+1.6
1,423,097	-				-0.3
1,423,097	-				-0.9
1,423,097	-				+0.0
1,423,097	-				-0.9
1,423,098	+				+3.0
1,423,098	+				-1.8
1,423,099	-				-0.7
1,423,099	-				-2.0
1,423,099	-				+0.4
1,423,099	-				-0.1
1,423,099	-				+0.7
1,423,120	-				+1.2
1,423,120	-				+0.1
1,423,120	-				-0.5
1,423,125	+				+0.4
1,423,125	+				-0.5
1,423,125	+				-0.9
1,423,125	+				-1.2
1,423,126	-				-0.3
1,423,126	-				-1.1
1,423,126	-				-0.1
1,423,126	-				+1.0
1,423,128	+				+2.0
1,423,128	+				-0.2
1,423,129	-				-0.6
1,423,129	-				+1.1
1,423,129	-				+0.7
1,423,168	+				-0.6
1,423,169	-				+0.2
1,423,200	+				-0.3
1,423,201	-				+0.7
1,423,258	+				+0.5
1,423,259	-				+0.8
1,423,259	-				-0.3
1,423,260	+				-1.2
1,423,260	+				-0.7
1,423,334	+				+1.2
1,423,449	+		IAI47_06820	0.17	+0.2
1,423,449	+		IAI47_06820	0.17	-0.4
1,423,449	+		IAI47_06820	0.17	+0.4
1,423,450	-		IAI47_06820	0.17	-0.1
1,423,450	-		IAI47_06820	0.17	+1.0
1,423,450	-		IAI47_06820	0.17	-0.9
1,423,450	-		IAI47_06820	0.17	+0.3
1,423,522	+		IAI47_06820	0.22	-0.1
1,423,531	+		IAI47_06820	0.23	+1.0
1,423,531	+		IAI47_06820	0.23	+2.2
1,423,531	+		IAI47_06820	0.23	+1.1
1,423,531	+		IAI47_06820	0.23	+0.7
1,423,531	+		IAI47_06820	0.23	-2.8
1,423,531	+		IAI47_06820	0.23	-0.3
1,423,531	+		IAI47_06820	0.23	+0.7
1,423,531	+		IAI47_06820	0.23	+0.2
1,423,532	-		IAI47_06820	0.23	-1.3
1,423,532	-		IAI47_06820	0.23	-0.6
1,423,532	-		IAI47_06820	0.23	+0.4
1,423,532	-		IAI47_06820	0.23	-1.5
1,423,532	-		IAI47_06820	0.23	+0.3
1,423,532	-		IAI47_06820	0.23	-0.8
1,423,532	-		IAI47_06820	0.23	-2.7
1,423,532	-		IAI47_06820	0.23	+0.9
1,423,532	-		IAI47_06820	0.23	-0.2
1,423,532	-		IAI47_06820	0.23	+1.3
1,423,532	-		IAI47_06820	0.23	-0.8
1,423,532	-		IAI47_06820	0.23	-1.2
1,423,585	+		IAI47_06820	0.26	-1.3
1,423,586	-		IAI47_06820	0.26	+0.3
1,423,586	-		IAI47_06820	0.26	+0.1
1,423,626	+		IAI47_06820	0.29	+0.3
1,423,626	+		IAI47_06820	0.29	+0.7
1,423,626	+		IAI47_06820	0.29	+0.3
1,423,626	+		IAI47_06820	0.29	-0.1
1,423,627	-		IAI47_06820	0.29	+0.5
1,423,627	-		IAI47_06820	0.29	-0.7
1,423,627	-		IAI47_06820	0.29	+0.5
1,423,734	+		IAI47_06820	0.37	-0.3
1,423,734	+		IAI47_06820	0.37	+1.2
1,423,734	+		IAI47_06820	0.37	+1.7
1,423,735	-		IAI47_06820	0.37	+2.2
1,423,735	-		IAI47_06820	0.37	+0.2
1,423,735	-		IAI47_06820	0.37	-0.8
1,423,741	-		IAI47_06820	0.37	-0.3
1,423,762	-		IAI47_06820	0.39	-1.3
1,423,762	-		IAI47_06820	0.39	+0.7
1,423,762	-		IAI47_06820	0.39	-0.5
1,423,762	-		IAI47_06820	0.39	+0.9
1,423,762	-		IAI47_06820	0.39	-0.0
1,423,812	+		IAI47_06820	0.42	-0.7
1,423,879	+		IAI47_06820	0.47	+0.3
1,423,879	+		IAI47_06820	0.47	-0.3
1,423,879	+		IAI47_06820	0.47	+2.1
1,423,879	+		IAI47_06820	0.47	+0.3
1,423,880	-		IAI47_06820	0.47	-0.6
1,424,034	+		IAI47_06820	0.57	-0.2
1,424,035	-		IAI47_06820	0.57	-0.1
1,424,035	-		IAI47_06820	0.57	-0.8
1,424,035	-		IAI47_06820	0.57	-0.3
1,424,035	-		IAI47_06820	0.57	-0.5
1,424,058	+		IAI47_06820	0.59	-0.3
1,424,058	+		IAI47_06820	0.59	-0.9
1,424,058	+		IAI47_06820	0.59	-1.0
1,424,058	+		IAI47_06820	0.59	-0.9
1,424,058	+		IAI47_06820	0.59	+1.2
1,424,058	+		IAI47_06820	0.59	-1.3
1,424,059	-		IAI47_06820	0.59	+1.2