Strain Fitness in Pantoea sp. MT58 around IAI47_06805

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,419,799	+		IAI47_06800	0.74	+0.1
1,419,834	-		IAI47_06800	0.77	+1.3
1,419,872	-		IAI47_06800	0.81	-0.2
1,419,872	-		IAI47_06800	0.81	-0.4
1,419,879	-		IAI47_06800	0.82	-1.7
1,419,911	-		IAI47_06800	0.85	-0.3
1,419,911	-		IAI47_06800	0.85	-1.8
1,419,976	-				-1.1
1,419,983	+				+1.0
1,419,983	+				+0.7
1,419,983	+				-1.3
1,419,999	-				+0.5
1,419,999	-				-0.5
1,420,028	+				-1.2
1,420,028	+				+0.2
1,420,029	-				+0.8
1,420,029	-				-0.8
1,420,029	-				-1.7
1,420,051	+				-0.3
1,420,051	+				+0.5
1,420,051	+				-1.5
1,420,051	+				+2.2
1,420,052	-				-1.7
1,420,052	-				-0.7
1,420,052	-				-0.2
1,420,052	-				-1.2
1,420,052	-				+0.1
1,420,052	-				+2.7
1,420,052	-				-0.7
1,420,052	-				-0.8
1,420,077	+				+0.3
1,420,077	+				-0.2
1,420,077	+				-0.2
1,420,077	+				+0.5
1,420,078	-				-0.9
1,420,104	+				-0.2
1,420,151	+				+0.2
1,420,156	+				-0.1
1,420,157	-				-0.2
1,420,194	-				+0.6
1,420,194	-				-0.5
1,420,196	+				-0.7
1,420,196	+				-0.3
1,420,197	-				+2.5
1,420,197	-				+0.1
1,420,210	+				-0.2
1,420,210	+				+0.1
1,420,243	-				+1.7
1,420,243	-				-0.6
1,420,299	+				-0.3
1,420,299	+				-0.5
1,420,300	-				-0.2
1,420,303	-				+1.2
1,420,330	-				-0.5
1,420,350	+				-0.6
1,420,350	+				+0.6
1,420,351	-				-1.8
1,420,351	-				-0.2
1,420,351	-				+0.7
1,420,351	-				+1.2
1,420,361	+				-0.7
1,420,361	+				-0.3
1,420,362	-				+2.5
1,420,362	-				-1.0
1,420,362	-				+0.4
1,420,362	-				-1.1
1,420,364	+				-0.2
1,420,364	+				-0.8
1,420,387	-				-0.2
1,420,437	+				-0.7
1,420,441	+				+1.6
1,420,442	-				-0.1
1,420,447	+				+1.0
1,420,474	-				+0.4
1,420,494	+				-0.2
1,420,494	+				-0.3
1,420,494	+				+1.1
1,420,495	-				-1.1
1,420,495	-				+0.4
1,420,495	-				-0.1
1,420,500	+				-0.1
1,420,501	-				-0.3
1,420,504	+				-0.4
1,420,507	-				+0.7
1,420,535	+				+1.0
1,420,536	-				-0.4
1,420,536	-				+0.7
1,420,536	-				-1.1
1,420,536	-				-1.2
1,420,574	+				-0.9
1,420,575	-				+1.4
1,420,575	-				+0.1
1,420,575	-				-0.1
1,420,629	+				+1.4
1,420,629	+				+0.2
1,420,629	+				-0.0
1,420,629	+				-1.1
1,420,630	-				-0.6
1,420,630	-				-0.2
1,420,631	+				-1.1
1,420,631	+				-1.0
1,420,631	+				-0.1
1,420,631	+				-0.9
1,420,632	-				-1.3
1,420,632	-				+0.5
1,420,632	-				-0.8
1,420,632	-				-2.0
1,420,640	+				+1.7
1,420,655	-				-1.1
1,420,733	-				-1.5
1,420,785	+				-0.2
1,420,786	-				-0.3
1,420,786	-				-3.3
1,420,913	+		IAI47_06805	0.16	+0.3
1,420,913	+		IAI47_06805	0.16	-0.1
1,420,913	+		IAI47_06805	0.16	-0.8
1,420,913	+		IAI47_06805	0.16	-0.3
1,420,913	+		IAI47_06805	0.16	-0.8
1,420,914	-		IAI47_06805	0.16	-2.1
1,420,914	-		IAI47_06805	0.16	-2.7
1,420,914	-		IAI47_06805	0.16	-1.5
1,420,914	-		IAI47_06805	0.16	-0.9
1,420,914	-		IAI47_06805	0.16	-0.2
1,420,926	+		IAI47_06805	0.17	-1.7
1,420,927	-		IAI47_06805	0.17	-0.9
1,420,927	-		IAI47_06805	0.17	-0.9
1,420,927	-		IAI47_06805	0.17	-2.8
1,420,927	-		IAI47_06805	0.17	-2.4
1,420,927	-		IAI47_06805	0.17	-0.8
1,420,927	-		IAI47_06805	0.17	-1.9
1,420,927	-		IAI47_06805	0.17	-0.9
1,420,927	-		IAI47_06805	0.17	-1.3
1,421,001	+		IAI47_06805	0.27	-2.9
1,421,001	+		IAI47_06805	0.27	-1.0
1,421,001	+		IAI47_06805	0.27	-0.3
1,421,001	+		IAI47_06805	0.27	-1.9
1,421,001	+		IAI47_06805	0.27	+0.5
1,421,002	-		IAI47_06805	0.27	-1.3
1,421,062	-		IAI47_06805	0.34	-2.3
1,421,141	+		IAI47_06805	0.44	-0.7
1,421,142	-		IAI47_06805	0.44	-0.7
1,421,142	-		IAI47_06805	0.44	-2.7
1,421,229	+		IAI47_06805	0.55	-0.8
1,421,229	+		IAI47_06805	0.55	+1.1
1,421,229	+		IAI47_06805	0.55	+1.3
1,421,229	+		IAI47_06805	0.55	-1.2
1,421,229	+		IAI47_06805	0.55	-2.0
1,421,229	+		IAI47_06805	0.55	-0.9
1,421,230	-		IAI47_06805	0.55	-1.1
1,421,230	-		IAI47_06805	0.55	-1.1
1,421,230	-		IAI47_06805	0.55	+0.2
1,421,230	-		IAI47_06805	0.55	-3.7
1,421,320	+		IAI47_06805	0.67	-2.7
1,421,448	-		IAI47_06805	0.83	-0.1
1,421,448	-		IAI47_06805	0.83	-0.3
1,421,448	-		IAI47_06805	0.83	+1.7
1,421,541	+				-0.6
1,421,542	-				+0.7
1,421,584	+				-1.7
1,421,584	+				-0.6
1,421,584	+				-1.0
1,421,585	-				-1.5
1,421,669	+		IAI47_06810	0.12	-3.2
1,421,669	+		IAI47_06810	0.12	-1.5
1,421,686	-		IAI47_06810	0.14	-3.6
1,421,832	+		IAI47_06810	0.32	-1.8
1,421,832	+		IAI47_06810	0.32	-1.8
1,421,832	+		IAI47_06810	0.32	-0.6
1,421,832	+		IAI47_06810	0.32	-0.1
1,421,832	+		IAI47_06810	0.32	-0.7
1,421,833	-		IAI47_06810	0.32	-1.3
1,421,833	-		IAI47_06810	0.32	-0.7
1,421,833	-		IAI47_06810	0.32	-1.3
1,421,833	-		IAI47_06810	0.32	-1.0
1,421,880	+		IAI47_06810	0.38	-1.3
1,421,880	+		IAI47_06810	0.38	-2.5
1,421,880	+		IAI47_06810	0.38	-0.8
1,421,881	-		IAI47_06810	0.38	-1.3
1,421,887	+		IAI47_06810	0.39	-0.1
1,421,946	+		IAI47_06810	0.47	-0.7
1,421,946	+		IAI47_06810	0.47	-1.5
1,421,946	+		IAI47_06810	0.47	-1.6
1,421,946	+		IAI47_06810	0.47	-1.5
1,421,947	-		IAI47_06810	0.47	+1.7
1,421,947	-		IAI47_06810	0.47	-1.5
1,422,112	+		IAI47_06810	0.67	-0.8
1,422,113	-		IAI47_06810	0.67	-3.3
1,422,229	-		IAI47_06810	0.82	-1.8
1,422,291	+		IAI47_06810	0.90	-1.0
1,422,306	+				-0.9
1,422,307	-				-1.2
1,422,316	+				-1.1
1,422,317	-				-0.5
1,422,317	-				-1.7
1,422,317	-				-0.9
1,422,426	+				+0.3
1,422,426	+				-1.2
1,422,451	+				-0.0
1,422,452	-				+0.1
1,422,452	-				-0.4
1,422,452	-				+0.8
1,422,452	-				+0.3