Strain Fitness in Pantoea sp. MT58 around IAI47_06800

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,418,099	+		IAI47_06795	0.41	-0.1
1,418,099	+		IAI47_06795	0.41	-0.3
1,418,100	-		IAI47_06795	0.41	-0.3
1,418,150	+		IAI47_06795	0.44	+0.3
1,418,150	+		IAI47_06795	0.44	+0.5
1,418,150	+		IAI47_06795	0.44	+0.7
1,418,150	+		IAI47_06795	0.44	+0.3
1,418,151	-		IAI47_06795	0.44	+0.5
1,418,151	-		IAI47_06795	0.44	-0.3
1,418,151	-		IAI47_06795	0.44	+0.1
1,418,151	-		IAI47_06795	0.44	+0.2
1,418,151	-		IAI47_06795	0.44	-0.8
1,418,162	-		IAI47_06795	0.45	-0.2
1,418,208	+		IAI47_06795	0.48	+3.0
1,418,209	-		IAI47_06795	0.48	+0.9
1,418,234	+		IAI47_06795	0.49	-0.2
1,418,234	+		IAI47_06795	0.49	-0.6
1,418,235	-		IAI47_06795	0.49	-0.1
1,418,235	-		IAI47_06795	0.49	+0.9
1,418,235	-		IAI47_06795	0.49	-2.3
1,418,300	+		IAI47_06795	0.53	-1.5
1,418,300	+		IAI47_06795	0.53	-0.2
1,418,300	+		IAI47_06795	0.53	-0.2
1,418,300	+		IAI47_06795	0.53	+0.5
1,418,300	+		IAI47_06795	0.53	-1.3
1,418,300	+		IAI47_06795	0.53	+0.1
1,418,300	+		IAI47_06795	0.53	+0.2
1,418,300	+		IAI47_06795	0.53	-0.4
1,418,301	-		IAI47_06795	0.54	-1.7
1,418,335	+		IAI47_06795	0.56	+1.0
1,418,336	-		IAI47_06795	0.56	+0.5
1,418,397	+		IAI47_06795	0.60	+0.1
1,418,397	+		IAI47_06795	0.60	+0.1
1,418,397	+		IAI47_06795	0.60	-0.3
1,418,398	-		IAI47_06795	0.60	+0.3
1,418,398	-		IAI47_06795	0.60	-0.3
1,418,413	+		IAI47_06795	0.61	-0.9
1,418,413	+		IAI47_06795	0.61	-0.3
1,418,413	+		IAI47_06795	0.61	-0.1
1,418,492	+		IAI47_06795	0.66	+0.1
1,418,492	+		IAI47_06795	0.66	-0.2
1,418,492	+		IAI47_06795	0.66	+0.1
1,418,493	-		IAI47_06795	0.66	+0.7
1,418,493	-		IAI47_06795	0.66	+0.1
1,418,493	-		IAI47_06795	0.66	-0.2
1,418,533	+		IAI47_06795	0.68	-0.2
1,418,533	+		IAI47_06795	0.68	+0.2
1,418,605	+		IAI47_06795	0.73	+1.1
1,418,605	+		IAI47_06795	0.73	+0.4
1,418,606	-		IAI47_06795	0.73	-0.5
1,418,606	-		IAI47_06795	0.73	-0.7
1,418,606	-		IAI47_06795	0.73	-0.6
1,418,606	-		IAI47_06795	0.73	+0.5
1,418,646	+		IAI47_06795	0.76	+0.2
1,418,646	+		IAI47_06795	0.76	+0.3
1,418,647	-		IAI47_06795	0.76	+0.7
1,418,656	+		IAI47_06795	0.76	+0.5
1,418,656	+		IAI47_06795	0.76	-2.1
1,418,657	-		IAI47_06795	0.76	-0.9
1,418,665	+		IAI47_06795	0.77	-0.6
1,418,665	+		IAI47_06795	0.77	+0.2
1,418,665	+		IAI47_06795	0.77	+0.4
1,418,729	-		IAI47_06795	0.81	-1.1
1,418,729	-		IAI47_06795	0.81	+0.3
1,418,747	+		IAI47_06795	0.82	+2.1
1,418,747	+		IAI47_06795	0.82	+0.7
1,418,747	+		IAI47_06795	0.82	-0.5
1,418,748	-		IAI47_06795	0.82	+0.9
1,418,825	-		IAI47_06795	0.87	-1.1
1,418,825	-		IAI47_06795	0.87	+1.7
1,418,825	-		IAI47_06795	0.87	+0.2
1,418,825	-		IAI47_06795	0.87	-0.5
1,418,884	+				+0.5
1,418,885	-				-2.7
1,418,885	-				-0.3
1,418,885	-				+0.4
1,418,942	+				+1.7
1,418,942	+				+1.1
1,418,943	-				-0.3
1,418,953	+				-0.5
1,418,953	+				+0.9
1,418,953	+				-0.3
1,418,953	+				+0.5
1,418,954	-				-0.1
1,418,954	-				+0.9
1,418,956	+				-0.1
1,418,956	+				-0.9
1,418,956	+				+0.0
1,418,957	-				-0.1
1,418,957	-				-0.8
1,419,002	+				-0.5
1,419,003	-				-0.5
1,419,016	+				-1.1
1,419,016	+				-0.9
1,419,017	-				-1.3
1,419,026	+				-2.1
1,419,026	+				-0.5
1,419,027	-				+0.4
1,419,029	+				-0.3
1,419,029	+				-0.3
1,419,029	+				+2.7
1,419,029	+				-0.2
1,419,029	+				-0.3
1,419,030	-				-0.8
1,419,051	+				-0.1
1,419,052	-				-0.8
1,419,093	+				+0.2
1,419,093	+				+0.7
1,419,093	+				-0.1
1,419,093	+				-0.9
1,419,093	+				+1.3
1,419,093	+				+1.0
1,419,094	-				+0.7
1,419,094	-				+0.8
1,419,094	-				-0.1
1,419,094	-				+0.1
1,419,097	-				-0.7
1,419,097	-				-0.6
1,419,097	-				+0.9
1,419,097	-				-0.1
1,419,196	+		IAI47_06800	0.11	-0.1
1,419,196	+		IAI47_06800	0.11	+1.0
1,419,216	+		IAI47_06800	0.13	-0.1
1,419,217	-		IAI47_06800	0.13	+1.5
1,419,225	-		IAI47_06800	0.14	-0.9
1,419,225	-		IAI47_06800	0.14	+0.7
1,419,262	+		IAI47_06800	0.18	+1.1
1,419,262	+		IAI47_06800	0.18	+0.3
1,419,262	+		IAI47_06800	0.18	-0.1
1,419,262	+		IAI47_06800	0.18	-1.4
1,419,263	-		IAI47_06800	0.18	-1.3
1,419,299	-		IAI47_06800	0.22	+0.2
1,419,305	+		IAI47_06800	0.22	-0.3
1,419,348	+		IAI47_06800	0.27	+0.5
1,419,348	+		IAI47_06800	0.27	-0.1
1,419,348	+		IAI47_06800	0.27	-0.1
1,419,348	+		IAI47_06800	0.27	-0.1
1,419,349	-		IAI47_06800	0.27	-0.7
1,419,359	+		IAI47_06800	0.28	-0.3
1,419,360	-		IAI47_06800	0.28	+0.1
1,419,360	-		IAI47_06800	0.28	+0.0
1,419,443	+		IAI47_06800	0.37	-0.4
1,419,443	+		IAI47_06800	0.37	+2.1
1,419,631	+		IAI47_06800	0.56	-0.6
1,419,631	+		IAI47_06800	0.56	-0.3
1,419,641	+		IAI47_06800	0.57	-0.2
1,419,641	+		IAI47_06800	0.57	-1.1
1,419,641	+		IAI47_06800	0.57	+0.4
1,419,641	+		IAI47_06800	0.57	+0.1
1,419,642	-		IAI47_06800	0.57	+1.1
1,419,713	-		IAI47_06800	0.65	+0.1
1,419,713	-		IAI47_06800	0.65	-1.8
1,419,724	+		IAI47_06800	0.66	-2.9
1,419,724	+		IAI47_06800	0.66	+1.7
1,419,725	-		IAI47_06800	0.66	-0.0
1,419,799	+		IAI47_06800	0.74	+0.1
1,419,834	-		IAI47_06800	0.77	+1.3
1,419,872	-		IAI47_06800	0.81	-0.2
1,419,872	-		IAI47_06800	0.81	-0.4
1,419,879	-		IAI47_06800	0.82	-1.7
1,419,911	-		IAI47_06800	0.85	-0.3
1,419,911	-		IAI47_06800	0.85	-1.8
1,419,976	-				-1.1
1,419,983	+				+1.0
1,419,983	+				+0.7
1,419,983	+				-1.3
1,419,999	-				+0.5
1,419,999	-				-0.5
1,420,028	+				-1.2
1,420,028	+				+0.2
1,420,029	-				+0.8
1,420,029	-				-0.8
1,420,029	-				-1.7
1,420,051	+				-0.3
1,420,051	+				+0.5
1,420,051	+				-1.5
1,420,051	+				+2.2
1,420,052	-				-1.7
1,420,052	-				-0.7
1,420,052	-				-0.2
1,420,052	-				-1.2
1,420,052	-				+0.1
1,420,052	-				+2.7
1,420,052	-				-0.7
1,420,052	-				-0.8
1,420,077	+				+0.3
1,420,077	+				-0.2
1,420,077	+				-0.2
1,420,077	+				+0.5
1,420,078	-				-0.9
1,420,104	+				-0.2
1,420,151	+				+0.2
1,420,156	+				-0.1
1,420,157	-				-0.2
1,420,194	-				+0.6
1,420,194	-				-0.5
1,420,196	+				-0.7
1,420,196	+				-0.3
1,420,197	-				+2.5
1,420,197	-				+0.1
1,420,210	+				-0.2
1,420,210	+				+0.1
1,420,243	-				+1.7
1,420,243	-				-0.6
1,420,299	+				-0.3
1,420,299	+				-0.5
1,420,300	-				-0.2
1,420,303	-				+1.2
1,420,330	-				-0.5
1,420,350	+				-0.6
1,420,350	+				+0.6
1,420,351	-				-1.8
1,420,351	-				-0.2
1,420,351	-				+0.7
1,420,351	-				+1.2
1,420,361	+				-0.7
1,420,361	+				-0.3
1,420,362	-				+2.5
1,420,362	-				-1.0
1,420,362	-				+0.4
1,420,362	-				-1.1
1,420,364	+				-0.2
1,420,364	+				-0.8
1,420,387	-				-0.2
1,420,437	+				-0.7
1,420,441	+				+1.6
1,420,442	-				-0.1
1,420,447	+				+1.0
1,420,474	-				+0.4
1,420,494	+				-0.2
1,420,494	+				-0.3
1,420,494	+				+1.1
1,420,495	-				-1.1
1,420,495	-				+0.4
1,420,495	-				-0.1
1,420,500	+				-0.1
1,420,501	-				-0.3
1,420,504	+				-0.4
1,420,507	-				+0.7
1,420,535	+				+1.0
1,420,536	-				-0.4
1,420,536	-				+0.7
1,420,536	-				-1.1
1,420,536	-				-1.2
1,420,574	+				-0.9
1,420,575	-				+1.4
1,420,575	-				+0.1
1,420,575	-				-0.1
1,420,629	+				+1.4
1,420,629	+				+0.2
1,420,629	+				-0.0
1,420,629	+				-1.1
1,420,630	-				-0.6
1,420,630	-				-0.2
1,420,631	+				-1.1
1,420,631	+				-1.0
1,420,631	+				-0.1
1,420,631	+				-0.9
1,420,632	-				-1.3
1,420,632	-				+0.5
1,420,632	-				-0.8
1,420,632	-				-2.0
1,420,640	+				+1.7
1,420,655	-				-1.1
1,420,733	-				-1.5
1,420,785	+				-0.2
1,420,786	-				-0.3
1,420,786	-				-3.3
1,420,913	+		IAI47_06805	0.16	+0.3
1,420,913	+		IAI47_06805	0.16	-0.1
1,420,913	+		IAI47_06805	0.16	-0.8
1,420,913	+		IAI47_06805	0.16	-0.3
1,420,913	+		IAI47_06805	0.16	-0.8
1,420,914	-		IAI47_06805	0.16	-2.1
1,420,914	-		IAI47_06805	0.16	-2.7
1,420,914	-		IAI47_06805	0.16	-1.5
1,420,914	-		IAI47_06805	0.16	-0.9
1,420,914	-		IAI47_06805	0.16	-0.2
1,420,926	+		IAI47_06805	0.17	-1.7
1,420,927	-		IAI47_06805	0.17	-0.9
1,420,927	-		IAI47_06805	0.17	-0.9
1,420,927	-		IAI47_06805	0.17	-2.8
1,420,927	-		IAI47_06805	0.17	-2.4
1,420,927	-		IAI47_06805	0.17	-0.8
1,420,927	-		IAI47_06805	0.17	-1.9
1,420,927	-		IAI47_06805	0.17	-0.9
1,420,927	-		IAI47_06805	0.17	-1.3
1,421,001	+		IAI47_06805	0.27	-2.9
1,421,001	+		IAI47_06805	0.27	-1.0
1,421,001	+		IAI47_06805	0.27	-0.3
1,421,001	+		IAI47_06805	0.27	-1.9
1,421,001	+		IAI47_06805	0.27	+0.5
1,421,002	-		IAI47_06805	0.27	-1.3