Strain Fitness in Pantoea sp. MT58 around IAI47_05425

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,146,846	+		IAI47_05415	0.74	-0.5
1,146,847	-		IAI47_05415	0.74	-1.7
1,146,847	-		IAI47_05415	0.74	+2.0
1,146,847	-		IAI47_05415	0.74	+0.9
1,146,847	-		IAI47_05415	0.74	+0.2
1,146,898	+		IAI47_05415	0.78	-0.5
1,146,898	+		IAI47_05415	0.78	-1.4
1,146,898	+		IAI47_05415	0.78	+0.9
1,146,898	+		IAI47_05415	0.78	+0.3
1,146,899	-		IAI47_05415	0.78	+0.6
1,146,899	-		IAI47_05415	0.78	+0.2
1,146,899	-		IAI47_05415	0.78	-0.1
1,146,899	-		IAI47_05415	0.78	-0.7
1,146,902	+		IAI47_05415	0.78	+0.2
1,146,902	+		IAI47_05415	0.78	+1.6
1,146,902	+		IAI47_05415	0.78	+0.0
1,146,902	+		IAI47_05415	0.78	-0.3
1,146,902	+		IAI47_05415	0.78	-1.7
1,146,902	+		IAI47_05415	0.78	+0.1
1,146,903	-		IAI47_05415	0.78	-0.3
1,147,067	+				-0.2
1,147,068	-				-0.8
1,147,068	-				-0.9
1,147,068	-				-1.2
1,147,074	+				-0.7
1,147,108	+				-1.3
1,147,108	+				-0.4
1,147,108	+				+1.1
1,147,108	+				+2.0
1,147,109	-				-1.0
1,147,204	+				+0.3
1,147,204	+				+0.0
1,147,204	+				-0.6
1,147,204	+				+0.8
1,147,204	+				+0.1
1,147,205	-				+0.6
1,147,205	-				+0.0
1,147,205	-				-1.7
1,147,240	+				+0.6
1,147,241	-				+0.4
1,147,241	-				+0.3
1,147,241	-				-0.2
1,147,245	+				+0.6
1,147,245	+				+0.6
1,147,246	-				+1.1
1,147,246	-				+0.4
1,147,255	+				+0.6
1,147,255	+				+2.6
1,147,256	-				+0.1
1,147,256	-				-1.2
1,147,256	-				-0.9
1,147,259	+				+0.4
1,147,259	+				-0.5
1,147,259	+				+0.3
1,147,260	-				-0.6
1,147,478	-		IAI47_05420	0.44	-1.4
1,147,612	-		IAI47_05420	0.71	-0.9
1,147,697	-		IAI47_05420	0.88	-1.7
1,147,769	+				+0.6
1,147,770	-				-0.9
1,147,770	-				-0.1
1,147,777	-				-0.4
1,147,777	-				+0.6
1,147,803	-				+0.3
1,147,821	+				-2.2
1,147,825	-				+0.6
1,147,825	-				+0.9
1,147,835	-				+0.0
1,147,912	-				+0.3
1,147,914	+				-1.5
1,147,984	+		IAI47_05425	0.11	-0.1
1,147,990	+		IAI47_05425	0.11	-0.7
1,147,990	+		IAI47_05425	0.11	-0.4
1,147,996	-		IAI47_05425	0.11	-0.5
1,148,041	-		IAI47_05425	0.14	+1.5
1,148,078	-		IAI47_05425	0.16	+0.6
1,148,083	-		IAI47_05425	0.16	-0.4
1,148,109	-		IAI47_05425	0.18	+0.6
1,148,131	-		IAI47_05425	0.19	-0.4
1,148,151	+		IAI47_05425	0.20	+0.1
1,148,151	+		IAI47_05425	0.20	-0.7
1,148,152	-		IAI47_05425	0.20	+2.5
1,148,154	-		IAI47_05425	0.20	+0.1
1,148,154	-		IAI47_05425	0.20	-2.4
1,148,179	-		IAI47_05425	0.22	+2.1
1,148,277	+		IAI47_05425	0.28	-0.1
1,148,277	+		IAI47_05425	0.28	+1.5
1,148,332	+		IAI47_05425	0.31	+0.4
1,148,451	+		IAI47_05425	0.38	+1.6
1,148,498	+		IAI47_05425	0.40	-2.4
1,148,499	-		IAI47_05425	0.40	-0.9
1,148,499	-		IAI47_05425	0.40	+1.4
1,148,532	+		IAI47_05425	0.42	+1.0
1,148,771	-		IAI47_05425	0.56	+3.2
1,148,792	+		IAI47_05425	0.57	+1.0
1,148,792	+		IAI47_05425	0.57	+0.5
1,148,793	-		IAI47_05425	0.57	+0.6
1,148,793	-		IAI47_05425	0.57	+1.5
1,149,409	+				-0.2
1,149,511	+				-1.4
1,149,512	-				-1.4
1,149,512	-				+1.1
1,149,529	-				+1.6
1,149,535	-				-0.1
1,149,542	-				+0.1
1,149,565	+				-0.4
1,149,566	-				+2.1
1,149,592	+				+0.6
1,149,592	+				+0.2
1,149,592	+				+0.4
1,149,593	-				-1.7
1,149,593	-				+0.4
1,149,597	+				-0.9
1,149,608	+				+0.5
1,149,691	+				+0.6
1,149,691	+				+0.6
1,149,692	-				-0.9
1,149,692	-				-0.9
1,149,923	+				-0.9
1,149,924	-				-0.0
1,149,930	-				-0.5
1,149,950	+				+1.2
1,149,951	-				+0.6
1,149,965	-				-0.4
1,149,965	-				-0.9
1,149,987	+				+1.6
1,149,988	-				+0.3
1,149,988	-				-1.1
1,149,988	-				+0.2
1,150,022	+				+1.1
1,150,023	-				-0.1
1,150,035	-				+0.2
1,150,036	+				+0.1
1,150,036	+				-1.4
1,150,036	+				-0.0
1,150,036	+				+0.3
1,150,037	-				-0.9
1,150,037	-				-1.5
1,150,037	-				+1.3
1,150,037	-				-1.1
1,150,037	-				+0.9
1,150,037	-				-0.5
1,150,037	-				-0.6
1,150,037	-				-0.7
1,150,074	+				+1.0
1,150,117	+		IAI47_05435	0.23	+1.1
1,150,117	+		IAI47_05435	0.23	-0.9
1,150,118	-		IAI47_05435	0.24	-0.0
1,150,122	-		IAI47_05435	0.25	-1.9
1,150,122	-		IAI47_05435	0.25	-1.4
1,150,122	-		IAI47_05435	0.25	-0.7
1,150,122	-		IAI47_05435	0.25	-2.2
1,150,122	-		IAI47_05435	0.25	+1.6
1,150,152	+		IAI47_05435	0.35	+3.2
1,150,153	-		IAI47_05435	0.35	+0.3
1,150,206	+		IAI47_05435	0.52	-0.6
1,150,207	-		IAI47_05435	0.52	+0.0
1,150,323	+		IAI47_05435	0.89	+0.2
1,150,324	-		IAI47_05435	0.89	+2.5
1,150,337	-				+0.4
1,150,387	+				-0.4
1,150,421	+				-0.9
1,150,421	+				-1.2
1,150,421	+				-3.3
1,150,421	+				-3.9
1,150,421	+				-0.4
1,150,421	+				-1.7
1,150,518	-		IAI47_05440	0.19	-2.8
1,150,523	+		IAI47_05440	0.19	-1.5
1,150,523	+		IAI47_05440	0.19	-0.9
1,150,523	+		IAI47_05440	0.19	-1.4
1,150,523	+		IAI47_05440	0.19	-1.7
1,150,524	-		IAI47_05440	0.20	-1.8
1,150,524	-		IAI47_05440	0.20	-2.7
1,150,524	-		IAI47_05440	0.20	-4.7