Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03920 and IAI47_03925 are separated by 142 nucleotides IAI47_03925 and IAI47_03930 overlap by 4 nucleotides IAI47_03930 and IAI47_03935 are separated by 191 nucleotides
IAI47_03920: IAI47_03920 - phosphoenolpyruvate--protein phosphotransferase, at 816,251 to 818,497
_03920
IAI47_03925: IAI47_03925 - prolipoprotein diacylglyceryl transferase, at 818,640 to 819,521
_03925
IAI47_03930: IAI47_03930 - thymidylate synthase, at 819,518 to 820,312
_03930
IAI47_03935: IAI47_03935 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 820,504 to 820,974
_03935
Position (kb) 818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 817.651 kb on + strand, within IAI47_03920 at 817.651 kb on + strand, within IAI47_03920 at 817.651 kb on + strand, within IAI47_03920 at 817.651 kb on + strand, within IAI47_03920 at 817.652 kb on - strand, within IAI47_03920 at 817.652 kb on - strand, within IAI47_03920 at 817.697 kb on + strand, within IAI47_03920 at 817.705 kb on + strand, within IAI47_03920 at 817.705 kb on + strand, within IAI47_03920 at 817.705 kb on + strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.866 kb on + strand, within IAI47_03920 at 817.867 kb on - strand, within IAI47_03920 at 817.867 kb on - strand, within IAI47_03920 at 817.933 kb on + strand, within IAI47_03920 at 817.934 kb on - strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.060 kb on - strand, within IAI47_03920 at 818.060 kb on - strand, within IAI47_03920 at 818.060 kb on - strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.124 kb on - strand, within IAI47_03920 at 818.124 kb on - strand, within IAI47_03920 at 818.124 kb on - strand, within IAI47_03920 at 818.146 kb on + strand, within IAI47_03920 at 818.146 kb on + strand, within IAI47_03920 at 818.147 kb on - strand, within IAI47_03920 at 818.147 kb on - strand, within IAI47_03920 at 818.147 kb on - strand, within IAI47_03920 at 818.168 kb on + strand, within IAI47_03920 at 818.168 kb on + strand, within IAI47_03920 at 818.168 kb on + strand, within IAI47_03920 at 818.169 kb on - strand, within IAI47_03920 at 818.169 kb on - strand, within IAI47_03920 at 818.329 kb on + strand at 818.330 kb on - strand at 818.338 kb on - strand at 818.338 kb on - strand at 818.347 kb on + strand at 818.347 kb on + strand at 818.347 kb on + strand at 818.347 kb on + strand at 818.348 kb on - strand at 818.348 kb on - strand at 818.348 kb on - strand at 818.352 kb on - strand at 818.352 kb on - strand at 818.352 kb on - strand at 818.453 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.498 kb on + strand at 818.498 kb on + strand at 818.498 kb on + strand at 818.499 kb on - strand at 818.499 kb on - strand at 818.499 kb on - strand at 818.570 kb on + strand at 818.570 kb on + strand at 818.570 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 820.320 kb on + strand at 820.320 kb on + strand at 820.321 kb on - strand at 820.321 kb on - strand at 820.321 kb on - strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.325 kb on - strand at 820.331 kb on + strand at 820.332 kb on - strand at 820.332 kb on - strand at 820.429 kb on + strand at 820.429 kb on + strand at 820.429 kb on + strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.459 kb on - strand at 820.485 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 817,651 + IAI47_03920 0.62 -0.0 817,651 + IAI47_03920 0.62 -0.7 817,651 + IAI47_03920 0.62 +0.1 817,651 + IAI47_03920 0.62 +0.7 817,652 - IAI47_03920 0.62 -0.4 817,652 - IAI47_03920 0.62 +1.3 817,697 + IAI47_03920 0.64 +0.4 817,705 + IAI47_03920 0.65 -1.5 817,705 + IAI47_03920 0.65 +0.8 817,705 + IAI47_03920 0.65 +1.1 817,706 - IAI47_03920 0.65 +2.0 817,706 - IAI47_03920 0.65 +0.2 817,706 - IAI47_03920 0.65 +0.4 817,706 - IAI47_03920 0.65 -0.1 817,706 - IAI47_03920 0.65 +0.3 817,706 - IAI47_03920 0.65 +2.2 817,778 + IAI47_03920 0.68 +0.7 817,778 + IAI47_03920 0.68 -0.7 817,778 + IAI47_03920 0.68 +0.3 817,778 + IAI47_03920 0.68 -0.1 817,778 + IAI47_03920 0.68 -0.2 817,778 + IAI47_03920 0.68 -0.0 817,778 + IAI47_03920 0.68 +2.3 817,778 + IAI47_03920 0.68 -0.1 817,778 + IAI47_03920 0.68 +0.5 817,778 + IAI47_03920 0.68 +0.5 817,778 + IAI47_03920 0.68 +0.4 817,778 + IAI47_03920 0.68 +0.4 817,778 + IAI47_03920 0.68 -0.3 817,778 + IAI47_03920 0.68 +0.7 817,779 - IAI47_03920 0.68 -0.2 817,779 - IAI47_03920 0.68 -1.4 817,779 - IAI47_03920 0.68 -0.1 817,779 - IAI47_03920 0.68 +0.3 817,779 - IAI47_03920 0.68 -0.9 817,779 - IAI47_03920 0.68 -1.9 817,779 - IAI47_03920 0.68 -1.3 817,866 + IAI47_03920 0.72 +0.0 817,867 - IAI47_03920 0.72 -0.5 817,867 - IAI47_03920 0.72 +1.7 817,933 + IAI47_03920 0.75 -0.6 817,934 - IAI47_03920 0.75 -0.5 818,059 + IAI47_03920 0.80 +0.7 818,059 + IAI47_03920 0.80 +0.3 818,059 + IAI47_03920 0.80 +0.0 818,059 + IAI47_03920 0.80 +0.2 818,059 + IAI47_03920 0.80 -0.8 818,059 + IAI47_03920 0.80 +0.4 818,059 + IAI47_03920 0.80 -0.3 818,059 + IAI47_03920 0.80 +0.4 818,060 - IAI47_03920 0.81 -0.7 818,060 - IAI47_03920 0.81 +1.0 818,060 - IAI47_03920 0.81 +1.1 818,123 + IAI47_03920 0.83 -1.6 818,123 + IAI47_03920 0.83 -0.5 818,123 + IAI47_03920 0.83 +1.3 818,123 + IAI47_03920 0.83 +1.0 818,123 + IAI47_03920 0.83 +1.1 818,123 + IAI47_03920 0.83 -0.5 818,123 + IAI47_03920 0.83 +0.3 818,124 - IAI47_03920 0.83 +0.9 818,124 - IAI47_03920 0.83 +1.0 818,124 - IAI47_03920 0.83 +1.0 818,146 + IAI47_03920 0.84 -0.2 818,146 + IAI47_03920 0.84 +0.4 818,147 - IAI47_03920 0.84 +1.4 818,147 - IAI47_03920 0.84 +0.9 818,147 - IAI47_03920 0.84 +0.5 818,168 + IAI47_03920 0.85 +1.3 818,168 + IAI47_03920 0.85 -1.9 818,168 + IAI47_03920 0.85 +1.9 818,169 - IAI47_03920 0.85 +1.3 818,169 - IAI47_03920 0.85 +0.8 818,329 + +0.3 818,330 - +0.3 818,338 - -0.1 818,338 - -0.0 818,347 + +1.4 818,347 + -0.5 818,347 + +0.3 818,347 + +0.5 818,348 - -1.3 818,348 - +0.1 818,348 - +1.7 818,352 - +0.1 818,352 - +1.4 818,352 - +0.7 818,453 - +2.3 818,496 - +0.2 818,496 - +0.1 818,496 - -0.3 818,496 - -0.1 818,496 - -1.1 818,498 + -0.7 818,498 + +0.7 818,498 + +0.0 818,499 - -0.2 818,499 - +2.7 818,499 - +0.3 818,570 + +0.7 818,570 + +0.7 818,570 + -0.4 818,590 + -0.1 818,590 + +0.6 818,590 + +0.1 818,590 + -0.4 818,590 + -3.1 818,590 + +0.4 820,320 + -0.2 820,320 + -0.4 820,321 - +0.5 820,321 - -0.4 820,321 - -0.6 820,324 + -0.3 820,324 + -0.5 820,324 + +0.7 820,324 + -1.0 820,325 - -0.0 820,331 + +1.4 820,332 - -0.6 820,332 - -0.2 820,429 + +1.3 820,429 + -0.5 820,429 + +0.6 820,430 - +0.7 820,430 - +0.6 820,430 - -0.3 820,430 - -0.6 820,459 - -0.9 820,485 + +2.6 820,516 + -1.2 820,516 + -0.4 820,516 + +0.1 820,516 + +1.1 820,516 + -0.8 820,516 + +0.6 820,516 + -0.5 820,516 + -1.3 820,517 - +0.4 820,517 - -0.2 820,517 - +0.6 820,517 - -0.3 820,517 - +0.6 820,517 - +0.0 820,517 - -0.4 820,517 - -0.3 820,517 - -0.1 820,520 + +0.1 820,520 + +0.4 820,520 + -0.6 820,520 + -0.4 820,520 + +0.4 820,520 + +0.7 820,520 + +2.7 820,520 + -1.1 820,520 + +0.0 820,520 + -0.2 820,520 + +1.4 820,521 - -1.2 820,521 - +1.5 820,521 - -0.5 820,521 - +0.1 820,521 - -1.6 820,521 - +0.4 820,521 - -0.6 820,521 - +0.5 820,521 - +0.0 820,521 - -0.2 820,521 - -1.3 820,521 - +0.4 820,521 - -0.9 820,521 - -0.6 820,521 - +0.3 820,521 - +0.7 820,521 - +1.2 820,521 - -0.4
Or see this region's nucleotide sequence