Strain Fitness in Pantoea sp. MT58 around IAI47_02610

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02605 and IAI47_02610 are separated by 56 nucleotidesIAI47_02610 and IAI47_02615 are separated by 164 nucleotides IAI47_02605: IAI47_02605 - protease modulator HflC, at 539,462 to 540,466 _02605 IAI47_02610: IAI47_02610 - DUF2065 domain-containing protein, at 540,523 to 540,723 _02610 IAI47_02615: IAI47_02615 - adenylosuccinate synthase, at 540,888 to 542,186 _02615 Position (kb) 540 541Strain fitness (log2 ratio) -2 -1 0 1 2 3at 539.647 kb on + strand, within IAI47_02605at 539.680 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.735 kb on + strand, within IAI47_02605at 539.736 kb on - strand, within IAI47_02605at 539.736 kb on - strand, within IAI47_02605at 539.749 kb on + strand, within IAI47_02605at 539.749 kb on + strand, within IAI47_02605at 539.750 kb on - strand, within IAI47_02605at 539.750 kb on - strand, within IAI47_02605at 539.753 kb on - strand, within IAI47_02605at 539.768 kb on + strand, within IAI47_02605at 539.768 kb on + strand, within IAI47_02605at 539.769 kb on - strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.771 kb on + strand, within IAI47_02605at 539.772 kb on - strand, within IAI47_02605at 539.772 kb on - strand, within IAI47_02605at 539.772 kb on - strand, within IAI47_02605at 539.824 kb on + strand, within IAI47_02605at 539.875 kb on + strand, within IAI47_02605at 540.006 kb on + strand, within IAI47_02605at 540.052 kb on + strand, within IAI47_02605at 540.052 kb on + strand, within IAI47_02605at 540.053 kb on - strand, within IAI47_02605at 540.063 kb on + strand, within IAI47_02605at 540.064 kb on - strand, within IAI47_02605at 540.064 kb on - strand, within IAI47_02605at 540.064 kb on - strand, within IAI47_02605at 540.064 kb on - strand, within IAI47_02605at 540.064 kb on - strand, within IAI47_02605at 540.067 kb on + strand, within IAI47_02605at 540.068 kb on - strand, within IAI47_02605at 540.068 kb on - strand, within IAI47_02605at 540.068 kb on - strand, within IAI47_02605at 540.068 kb on - strand, within IAI47_02605at 540.068 kb on - strand, within IAI47_02605at 540.139 kb on + strand, within IAI47_02605at 540.139 kb on + strand, within IAI47_02605at 540.139 kb on + strand, within IAI47_02605at 540.139 kb on + strand, within IAI47_02605at 540.139 kb on + strand, within IAI47_02605at 540.224 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.238 kb on + strand, within IAI47_02605at 540.239 kb on - strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.271 kb on + strand, within IAI47_02605at 540.272 kb on - strand, within IAI47_02605at 540.341 kb on + strand, within IAI47_02605at 540.341 kb on + strand, within IAI47_02605at 540.342 kb on - strand, within IAI47_02605at 540.355 kb on + strand, within IAI47_02605at 540.369 kb on - strandat 540.408 kb on + strandat 540.408 kb on + strandat 540.408 kb on + strandat 540.408 kb on + strandat 540.408 kb on + strandat 540.409 kb on - strandat 540.409 kb on - strandat 540.434 kb on + strandat 540.434 kb on + strandat 540.434 kb on + strandat 540.434 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.436 kb on + strandat 540.437 kb on - strandat 540.437 kb on - strandat 540.437 kb on - strandat 540.437 kb on - strandat 540.437 kb on - strandat 540.437 kb on - strandat 540.464 kb on + strandat 540.464 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.474 kb on + strandat 540.475 kb on - strandat 540.475 kb on - strandat 540.475 kb on - strandat 540.476 kb on + strandat 540.476 kb on + strandat 540.476 kb on + strandat 540.476 kb on + strandat 540.476 kb on + strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.477 kb on - strandat 540.483 kb on + strandat 540.557 kb on + strand, within IAI47_02610at 540.558 kb on - strand, within IAI47_02610at 540.558 kb on - strand, within IAI47_02610at 540.558 kb on - strand, within IAI47_02610at 540.558 kb on - strand, within IAI47_02610at 540.560 kb on + strand, within IAI47_02610at 540.560 kb on + strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.561 kb on - strand, within IAI47_02610at 540.588 kb on + strand, within IAI47_02610at 540.588 kb on + strand, within IAI47_02610at 540.588 kb on + strand, within IAI47_02610at 540.589 kb on - strand, within IAI47_02610at 540.589 kb on - strand, within IAI47_02610at 540.589 kb on - strand, within IAI47_02610at 540.691 kb on + strand, within IAI47_02610at 540.691 kb on + strand, within IAI47_02610at 540.691 kb on + strand, within IAI47_02610at 540.691 kb on + strand, within IAI47_02610at 540.692 kb on - strand, within IAI47_02610at 540.692 kb on - strand, within IAI47_02610at 540.692 kb on - strand, within IAI47_02610at 540.692 kb on - strand, within IAI47_02610at 540.721 kb on + strandat 540.721 kb on + strandat 540.721 kb on + strandat 540.764 kb on + strandat 540.773 kb on + strandat 540.773 kb on + strandat 540.773 kb on + strandat 540.773 kb on + strandat 540.780 kb on + strandat 540.780 kb on + strandat 540.780 kb on + strandat 540.780 kb on + strandat 540.781 kb on - strandat 540.781 kb on - strandat 540.781 kb on - strandat 540.816 kb on + strandat 540.817 kb on - strandat 540.821 kb on + strandat 540.822 kb on - strandat 540.839 kb on + strandat 540.839 kb on + strandat 540.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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539,647 + IAI47_02605 0.18 +0.5
539,680 + IAI47_02605 0.22 +0.5
539,735 + IAI47_02605 0.27 -1.5
539,735 + IAI47_02605 0.27 +2.1
539,735 + IAI47_02605 0.27 +0.3
539,735 + IAI47_02605 0.27 -2.6
539,735 + IAI47_02605 0.27 +2.4
539,735 + IAI47_02605 0.27 +0.7
539,736 - IAI47_02605 0.27 +2.8
539,736 - IAI47_02605 0.27 +0.3
539,749 + IAI47_02605 0.29 -0.3
539,749 + IAI47_02605 0.29 +0.9
539,750 - IAI47_02605 0.29 +1.0
539,750 - IAI47_02605 0.29 -0.4
539,753 - IAI47_02605 0.29 +1.1
539,768 + IAI47_02605 0.30 +0.9
539,768 + IAI47_02605 0.30 -0.3
539,769 - IAI47_02605 0.31 +1.3
539,771 + IAI47_02605 0.31 +1.0
539,771 + IAI47_02605 0.31 +1.9
539,771 + IAI47_02605 0.31 -0.2
539,771 + IAI47_02605 0.31 -0.2
539,771 + IAI47_02605 0.31 +0.9
539,771 + IAI47_02605 0.31 +1.3
539,771 + IAI47_02605 0.31 +0.7
539,772 - IAI47_02605 0.31 -0.9
539,772 - IAI47_02605 0.31 -0.1
539,772 - IAI47_02605 0.31 +1.0
539,824 + IAI47_02605 0.36 +0.7
539,875 + IAI47_02605 0.41 +0.1
540,006 + IAI47_02605 0.54 +0.2
540,052 + IAI47_02605 0.59 +0.3
540,052 + IAI47_02605 0.59 +1.8
540,053 - IAI47_02605 0.59 -0.2
540,063 + IAI47_02605 0.60 +0.7
540,064 - IAI47_02605 0.60 +1.8
540,064 - IAI47_02605 0.60 +3.1
540,064 - IAI47_02605 0.60 +1.2
540,064 - IAI47_02605 0.60 +0.2
540,064 - IAI47_02605 0.60 +0.7
540,067 + IAI47_02605 0.60 +0.5
540,068 - IAI47_02605 0.60 +0.5
540,068 - IAI47_02605 0.60 +0.1
540,068 - IAI47_02605 0.60 +0.5
540,068 - IAI47_02605 0.60 +2.3
540,068 - IAI47_02605 0.60 +0.9
540,139 + IAI47_02605 0.67 -0.3
540,139 + IAI47_02605 0.67 +0.5
540,139 + IAI47_02605 0.67 -2.1
540,139 + IAI47_02605 0.67 +1.1
540,139 + IAI47_02605 0.67 +0.9
540,224 + IAI47_02605 0.76 +0.9
540,238 + IAI47_02605 0.77 -1.1
540,238 + IAI47_02605 0.77 +1.5
540,238 + IAI47_02605 0.77 +0.2
540,238 + IAI47_02605 0.77 -0.7
540,238 + IAI47_02605 0.77 +1.2
540,238 + IAI47_02605 0.77 +0.2
540,239 - IAI47_02605 0.77 +1.1
540,271 + IAI47_02605 0.80 +2.5
540,271 + IAI47_02605 0.80 +1.6
540,271 + IAI47_02605 0.80 +1.9
540,271 + IAI47_02605 0.80 +1.0
540,271 + IAI47_02605 0.80 +0.7
540,271 + IAI47_02605 0.80 -0.0
540,271 + IAI47_02605 0.80 -0.6
540,271 + IAI47_02605 0.80 +0.3
540,272 - IAI47_02605 0.81 +0.1
540,341 + IAI47_02605 0.87 +1.0
540,341 + IAI47_02605 0.87 +1.3
540,342 - IAI47_02605 0.88 -0.2
540,355 + IAI47_02605 0.89 +0.1
540,369 - +3.1
540,408 + -0.0
540,408 + +0.0
540,408 + +1.5
540,408 + -0.0
540,408 + +1.3
540,409 - +1.5
540,409 - +2.0
540,434 + +1.5
540,434 + -2.0
540,434 + -0.3
540,434 + +1.4
540,436 + +1.7
540,436 + +1.1
540,436 + +0.3
540,436 + -0.5
540,436 + +0.3
540,436 + +0.4
540,436 + +0.7
540,436 + -0.6
540,436 + +0.4
540,436 + +1.1
540,437 - +1.4
540,437 - +1.5
540,437 - +1.0
540,437 - +1.6
540,437 - -0.0
540,437 - +0.4
540,464 + -0.1
540,464 + -0.2
540,474 + +1.7
540,474 + -0.2
540,474 + +1.7
540,474 + +0.3
540,474 + -0.3
540,474 + +0.4
540,474 + -0.5
540,475 - -0.7
540,475 - -0.4
540,475 - +0.8
540,476 + -0.4
540,476 + -1.6
540,476 + -0.1
540,476 + +0.3
540,476 + -0.9
540,477 - -1.9
540,477 - +1.4
540,477 - +0.7
540,477 - +0.0
540,477 - +1.5
540,477 - +0.1
540,477 - -0.8
540,483 + +0.3
540,557 + IAI47_02610 0.17 -0.3
540,558 - IAI47_02610 0.17 +1.0
540,558 - IAI47_02610 0.17 +0.4
540,558 - IAI47_02610 0.17 -1.2
540,558 - IAI47_02610 0.17 -2.5
540,560 + IAI47_02610 0.18 +0.1
540,560 + IAI47_02610 0.18 -0.6
540,561 - IAI47_02610 0.19 +1.7
540,561 - IAI47_02610 0.19 +0.8
540,561 - IAI47_02610 0.19 +1.3
540,561 - IAI47_02610 0.19 -0.2
540,561 - IAI47_02610 0.19 +0.5
540,561 - IAI47_02610 0.19 +0.3
540,561 - IAI47_02610 0.19 +0.1
540,561 - IAI47_02610 0.19 -0.3
540,561 - IAI47_02610 0.19 -0.1
540,561 - IAI47_02610 0.19 -0.1
540,588 + IAI47_02610 0.32 +0.0
540,588 + IAI47_02610 0.32 +0.1
540,588 + IAI47_02610 0.32 -0.2
540,589 - IAI47_02610 0.33 -0.6
540,589 - IAI47_02610 0.33 +0.4
540,589 - IAI47_02610 0.33 -0.3
540,691 + IAI47_02610 0.84 -0.6
540,691 + IAI47_02610 0.84 -2.3
540,691 + IAI47_02610 0.84 -1.1
540,691 + IAI47_02610 0.84 -0.7
540,692 - IAI47_02610 0.84 -0.8
540,692 - IAI47_02610 0.84 +0.7
540,692 - IAI47_02610 0.84 +1.3
540,692 - IAI47_02610 0.84 -0.7
540,721 + +1.5
540,721 + -1.3
540,721 + +0.7
540,764 + -0.1
540,773 + -0.5
540,773 + -0.6
540,773 + +3.0
540,773 + -0.6
540,780 + -0.3
540,780 + +1.1
540,780 + -0.6
540,780 + +1.7
540,781 - -0.3
540,781 - +0.1
540,781 - +1.1
540,816 + -0.6
540,817 - +0.1
540,821 + -0.7
540,822 - -0.9
540,839 + -1.3
540,839 + -0.3
540,852 + +0.2

Or see this region's nucleotide sequence