Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01900 and IAI47_01905 are separated by 93 nucleotides IAI47_01905 and IAI47_01910 are separated by 67 nucleotides IAI47_01910 and IAI47_01915 overlap by 17 nucleotides IAI47_01915 and IAI47_01920 are separated by 16 nucleotides
IAI47_01900: IAI47_01900 - SPOR domain-containing protein, at 416,470 to 417,516
_01900
IAI47_01905: IAI47_01905 - adenine-specific DNA-methyltransferase, at 417,610 to 418,425
_01905
IAI47_01910: IAI47_01910 - ribulose-phosphate 3-epimerase, at 418,493 to 419,176
_01910
IAI47_01915: IAI47_01915 - phosphoglycolate phosphatase, at 419,160 to 419,837
_01915
IAI47_01920: IAI47_01920 - tryptophan--tRNA ligase, at 419,854 to 420,855
_01920
Position (kb) 418
419
420 Strain fitness (log2 ratio) -1
0
1
2 at 417.587 kb on + strand at 417.587 kb on + strand at 417.587 kb on + strand at 417.587 kb on + strand at 417.594 kb on + strand at 417.594 kb on + strand at 417.594 kb on + strand at 417.594 kb on + strand at 417.594 kb on + strand at 417.594 kb on + strand at 417.597 kb on + strand at 417.597 kb on + strand at 417.597 kb on + strand at 417.597 kb on + strand at 417.597 kb on + strand at 418.423 kb on + strand at 419.324 kb on + strand, within IAI47_01915 at 419.438 kb on + strand, within IAI47_01915 at 419.438 kb on + strand, within IAI47_01915 at 419.438 kb on + strand, within IAI47_01915 at 419.458 kb on + strand, within IAI47_01915 at 419.479 kb on + strand, within IAI47_01915 at 419.479 kb on + strand, within IAI47_01915 at 419.582 kb on + strand, within IAI47_01915 at 419.633 kb on + strand, within IAI47_01915 at 419.633 kb on + strand, within IAI47_01915 at 419.656 kb on + strand, within IAI47_01915 at 419.656 kb on + strand, within IAI47_01915 at 419.699 kb on + strand, within IAI47_01915 at 419.699 kb on + strand, within IAI47_01915 at 419.738 kb on + strand, within IAI47_01915 at 419.751 kb on + strand, within IAI47_01915 at 419.751 kb on + strand, within IAI47_01915 at 419.753 kb on + strand, within IAI47_01915 at 419.753 kb on + strand, within IAI47_01915 at 419.753 kb on + strand, within IAI47_01915 at 419.753 kb on + strand, within IAI47_01915 at 419.753 kb on + strand, within IAI47_01915 at 419.791 kb on + strand at 419.835 kb on + strand at 419.835 kb on + strand at 419.835 kb on + strand at 419.835 kb on + strand at 419.839 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 417,587 + +0.5 417,587 + +0.3 417,587 + -0.9 417,587 + -0.9 417,594 + -0.0 417,594 + +0.1 417,594 + +0.7 417,594 + -0.3 417,594 + -0.6 417,594 + +0.1 417,597 + -0.1 417,597 + -0.2 417,597 + -0.8 417,597 + -0.7 417,597 + +0.6 418,423 + -0.3 419,324 + IAI47_01915 0.24 -0.3 419,438 + IAI47_01915 0.41 +0.1 419,438 + IAI47_01915 0.41 -1.3 419,438 + IAI47_01915 0.41 +1.3 419,458 + IAI47_01915 0.44 -0.5 419,479 + IAI47_01915 0.47 -0.9 419,479 + IAI47_01915 0.47 -1.4 419,582 + IAI47_01915 0.62 +0.1 419,633 + IAI47_01915 0.70 -0.9 419,633 + IAI47_01915 0.70 +1.9 419,656 + IAI47_01915 0.73 -1.2 419,656 + IAI47_01915 0.73 -0.8 419,699 + IAI47_01915 0.79 -0.3 419,699 + IAI47_01915 0.79 -0.6 419,738 + IAI47_01915 0.85 -0.5 419,751 + IAI47_01915 0.87 -1.2 419,751 + IAI47_01915 0.87 -0.1 419,753 + IAI47_01915 0.87 +0.9 419,753 + IAI47_01915 0.87 +0.3 419,753 + IAI47_01915 0.87 -0.3 419,753 + IAI47_01915 0.87 -1.4 419,753 + IAI47_01915 0.87 +0.2 419,791 + +0.9 419,835 + +0.7 419,835 + +0.4 419,835 + +0.2 419,835 + +0.5 419,839 + +0.7
Or see this region's nucleotide sequence