Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20900 and IAI47_20905 are separated by 105 nucleotides IAI47_20905 and IAI47_20910 are separated by 449 nucleotides
IAI47_20900: IAI47_20900 - maltoporin, at 425,715 to 426,977
_20900
IAI47_20905: IAI47_20905 - PTS transporter subunit EIIB, at 427,083 to 427,400
_20905
IAI47_20910: IAI47_20910 - beta-galactosidase, at 427,850 to 429,922
_20910
Position (kb) 427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 426.114 kb on + strand, within IAI47_20900 at 426.115 kb on - strand, within IAI47_20900 at 426.117 kb on + strand, within IAI47_20900 at 426.117 kb on + strand, within IAI47_20900 at 426.117 kb on + strand, within IAI47_20900 at 426.117 kb on + strand, within IAI47_20900 at 426.118 kb on - strand, within IAI47_20900 at 426.118 kb on - strand, within IAI47_20900 at 426.118 kb on - strand, within IAI47_20900 at 426.118 kb on - strand, within IAI47_20900 at 426.146 kb on + strand, within IAI47_20900 at 426.153 kb on + strand, within IAI47_20900 at 426.153 kb on + strand, within IAI47_20900 at 426.154 kb on - strand, within IAI47_20900 at 426.161 kb on + strand, within IAI47_20900 at 426.192 kb on + strand, within IAI47_20900 at 426.193 kb on - strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.291 kb on + strand, within IAI47_20900 at 426.291 kb on + strand, within IAI47_20900 at 426.292 kb on - strand, within IAI47_20900 at 426.292 kb on - strand, within IAI47_20900 at 426.292 kb on - strand, within IAI47_20900 at 426.306 kb on + strand, within IAI47_20900 at 426.357 kb on + strand, within IAI47_20900 at 426.358 kb on - strand, within IAI47_20900 at 426.358 kb on - strand, within IAI47_20900 at 426.393 kb on + strand, within IAI47_20900 at 426.393 kb on + strand, within IAI47_20900 at 426.394 kb on - strand, within IAI47_20900 at 426.394 kb on - strand, within IAI47_20900 at 426.405 kb on + strand, within IAI47_20900 at 426.406 kb on - strand, within IAI47_20900 at 426.406 kb on - strand, within IAI47_20900 at 426.425 kb on + strand, within IAI47_20900 at 426.426 kb on - strand, within IAI47_20900 at 426.452 kb on + strand, within IAI47_20900 at 426.453 kb on - strand, within IAI47_20900 at 426.453 kb on - strand, within IAI47_20900 at 426.453 kb on - strand, within IAI47_20900 at 426.453 kb on - strand, within IAI47_20900 at 426.453 kb on - strand, within IAI47_20900 at 426.453 kb on - strand, within IAI47_20900 at 426.453 kb on - strand, within IAI47_20900 at 426.453 kb on - strand, within IAI47_20900 at 426.453 kb on - strand, within IAI47_20900 at 426.465 kb on + strand, within IAI47_20900 at 426.537 kb on + strand, within IAI47_20900 at 426.538 kb on - strand, within IAI47_20900 at 426.538 kb on - strand, within IAI47_20900 at 426.538 kb on - strand, within IAI47_20900 at 426.555 kb on - strand, within IAI47_20900 at 426.587 kb on + strand, within IAI47_20900 at 426.656 kb on + strand, within IAI47_20900 at 426.656 kb on + strand, within IAI47_20900 at 426.657 kb on - strand, within IAI47_20900 at 426.657 kb on - strand, within IAI47_20900 at 426.680 kb on + strand, within IAI47_20900 at 426.712 kb on - strand, within IAI47_20900 at 426.726 kb on + strand, within IAI47_20900 at 426.726 kb on + strand, within IAI47_20900 at 426.726 kb on + strand, within IAI47_20900 at 426.726 kb on + strand, within IAI47_20900 at 426.726 kb on + strand, within IAI47_20900 at 426.726 kb on + strand, within IAI47_20900 at 426.726 kb on + strand, within IAI47_20900 at 426.726 kb on + strand, within IAI47_20900 at 426.726 kb on + strand, within IAI47_20900 at 426.727 kb on + strand, within IAI47_20900 at 426.727 kb on - strand, within IAI47_20900 at 426.727 kb on - strand, within IAI47_20900 at 426.727 kb on - strand, within IAI47_20900 at 426.727 kb on - strand, within IAI47_20900 at 426.727 kb on - strand, within IAI47_20900 at 426.727 kb on - strand, within IAI47_20900 at 426.776 kb on + strand, within IAI47_20900 at 426.776 kb on + strand, within IAI47_20900 at 426.777 kb on - strand, within IAI47_20900 at 426.792 kb on + strand, within IAI47_20900 at 426.793 kb on - strand, within IAI47_20900 at 426.794 kb on + strand, within IAI47_20900 at 426.794 kb on + strand, within IAI47_20900 at 426.795 kb on - strand, within IAI47_20900 at 426.813 kb on + strand, within IAI47_20900 at 426.813 kb on + strand, within IAI47_20900 at 426.813 kb on + strand, within IAI47_20900 at 426.814 kb on - strand, within IAI47_20900 at 426.814 kb on - strand, within IAI47_20900 at 426.815 kb on + strand, within IAI47_20900 at 426.816 kb on - strand, within IAI47_20900 at 426.851 kb on + strand at 426.851 kb on + strand at 426.851 kb on + strand at 426.852 kb on - strand at 426.852 kb on - strand at 426.852 kb on - strand at 426.868 kb on + strand at 426.868 kb on + strand at 426.868 kb on + strand at 426.868 kb on + strand at 426.868 kb on + strand at 426.868 kb on + strand at 426.868 kb on + strand at 426.869 kb on - strand at 426.869 kb on - strand at 426.885 kb on + strand at 426.885 kb on + strand at 426.886 kb on - strand at 426.933 kb on - strand at 426.955 kb on + strand at 426.956 kb on - strand at 427.007 kb on + strand at 427.008 kb on - strand at 427.015 kb on + strand at 427.015 kb on + strand at 427.015 kb on + strand at 427.015 kb on + strand at 427.015 kb on + strand at 427.016 kb on - strand at 427.016 kb on - strand at 427.016 kb on - strand at 427.027 kb on + strand at 427.027 kb on + strand at 427.027 kb on + strand at 427.027 kb on + strand at 427.028 kb on - strand at 427.028 kb on - strand at 427.028 kb on - strand at 427.068 kb on + strand at 427.085 kb on - strand at 427.097 kb on + strand at 427.142 kb on + strand, within IAI47_20905 at 427.158 kb on + strand, within IAI47_20905 at 427.159 kb on - strand, within IAI47_20905 at 427.159 kb on - strand, within IAI47_20905 at 427.159 kb on - strand, within IAI47_20905 at 427.159 kb on - strand, within IAI47_20905 at 427.203 kb on + strand, within IAI47_20905 at 427.204 kb on - strand, within IAI47_20905 at 427.236 kb on + strand, within IAI47_20905 at 427.237 kb on - strand, within IAI47_20905 at 427.281 kb on - strand, within IAI47_20905 at 427.281 kb on - strand, within IAI47_20905 at 427.320 kb on + strand, within IAI47_20905 at 427.321 kb on - strand, within IAI47_20905 at 427.373 kb on - strand at 427.418 kb on - strand at 427.421 kb on - strand at 427.458 kb on + strand at 427.458 kb on + strand at 427.499 kb on + strand at 427.499 kb on + strand at 427.500 kb on - strand at 427.500 kb on - strand at 427.500 kb on - strand at 427.501 kb on + strand at 427.501 kb on + strand at 427.501 kb on + strand at 427.501 kb on + strand at 427.501 kb on + strand at 427.502 kb on - strand at 427.502 kb on - strand at 427.502 kb on - strand at 427.502 kb on - strand at 427.518 kb on + strand at 427.518 kb on + strand at 427.519 kb on - strand at 427.519 kb on - strand at 427.519 kb on - strand at 427.519 kb on - strand at 427.519 kb on - strand at 427.519 kb on - strand at 427.519 kb on - strand at 427.519 kb on - strand at 427.519 kb on - strand at 427.526 kb on + strand at 427.526 kb on + strand at 427.527 kb on - strand at 427.552 kb on + strand at 427.552 kb on + strand at 427.555 kb on + strand at 427.556 kb on - strand at 427.556 kb on - strand at 427.563 kb on - strand at 427.575 kb on + strand at 427.575 kb on + strand at 427.576 kb on - strand at 427.576 kb on - strand at 427.576 kb on - strand at 427.576 kb on - strand at 427.576 kb on - strand at 427.578 kb on + strand at 427.578 kb on + strand at 427.579 kb on - strand at 427.579 kb on - strand at 427.579 kb on - strand at 427.621 kb on + strand at 427.649 kb on - strand at 427.720 kb on + strand at 427.720 kb on + strand at 427.721 kb on - strand at 427.723 kb on + strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.851 kb on + strand at 427.851 kb on + strand at 427.854 kb on - strand at 427.870 kb on + strand at 427.870 kb on + strand at 427.871 kb on - strand at 427.987 kb on + strand at 428.092 kb on + strand, within IAI47_20910 at 428.092 kb on + strand, within IAI47_20910 at 428.092 kb on + strand, within IAI47_20910 at 428.092 kb on + strand, within IAI47_20910 at 428.092 kb on + strand, within IAI47_20910 at 428.093 kb on - strand, within IAI47_20910 at 428.135 kb on - strand, within IAI47_20910 at 428.146 kb on + strand, within IAI47_20910 at 428.146 kb on + strand, within IAI47_20910 at 428.146 kb on + strand, within IAI47_20910 at 428.146 kb on + strand, within IAI47_20910 at 428.146 kb on + strand, within IAI47_20910 at 428.146 kb on + strand, within IAI47_20910 at 428.146 kb on + strand, within IAI47_20910 at 428.146 kb on + strand, within IAI47_20910 at 428.147 kb on - strand, within IAI47_20910 at 428.147 kb on - strand, within IAI47_20910 at 428.147 kb on - strand, within IAI47_20910 at 428.147 kb on - strand, within IAI47_20910 at 428.147 kb on - strand, within IAI47_20910 at 428.148 kb on + strand, within IAI47_20910 at 428.148 kb on + strand, within IAI47_20910 at 428.148 kb on + strand, within IAI47_20910 at 428.148 kb on + strand, within IAI47_20910 at 428.148 kb on + strand, within IAI47_20910 at 428.148 kb on + strand, within IAI47_20910 at 428.149 kb on - strand, within IAI47_20910 at 428.149 kb on - strand, within IAI47_20910 at 428.149 kb on - strand, within IAI47_20910 at 428.158 kb on + strand, within IAI47_20910 at 428.173 kb on + strand, within IAI47_20910 at 428.173 kb on + strand, within IAI47_20910 at 428.174 kb on - strand, within IAI47_20910 at 428.174 kb on - strand, within IAI47_20910 at 428.202 kb on + strand, within IAI47_20910 at 428.251 kb on + strand, within IAI47_20910 at 428.251 kb on + strand, within IAI47_20910 at 428.251 kb on + strand, within IAI47_20910 at 428.251 kb on + strand at 428.251 kb on + strand, within IAI47_20910 at 428.251 kb on + strand, within IAI47_20910 at 428.251 kb on + strand, within IAI47_20910 at 428.251 kb on + strand, within IAI47_20910 at 428.252 kb on - strand, within IAI47_20910 at 428.252 kb on - strand, within IAI47_20910 at 428.252 kb on - strand, within IAI47_20910 at 428.252 kb on - strand, within IAI47_20910 at 428.252 kb on - strand, within IAI47_20910 at 428.252 kb on - strand, within IAI47_20910 at 428.252 kb on - strand, within IAI47_20910
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 426,114 + IAI47_20900 0.32 +0.3 426,115 - IAI47_20900 0.32 +0.3 426,117 + IAI47_20900 0.32 -0.5 426,117 + IAI47_20900 0.32 -0.1 426,117 + IAI47_20900 0.32 +1.0 426,117 + IAI47_20900 0.32 -1.0 426,118 - IAI47_20900 0.32 +0.3 426,118 - IAI47_20900 0.32 +0.1 426,118 - IAI47_20900 0.32 -0.6 426,118 - IAI47_20900 0.32 +0.5 426,146 + IAI47_20900 0.34 -0.1 426,153 + IAI47_20900 0.35 +0.5 426,153 + IAI47_20900 0.35 -2.3 426,154 - IAI47_20900 0.35 -0.7 426,161 + IAI47_20900 0.35 -0.4 426,192 + IAI47_20900 0.38 -0.5 426,193 - IAI47_20900 0.38 -1.6 426,287 + IAI47_20900 0.45 +0.9 426,287 + IAI47_20900 0.45 -0.6 426,287 + IAI47_20900 0.45 -0.5 426,287 + IAI47_20900 0.45 +0.1 426,287 + IAI47_20900 0.45 +1.2 426,287 + IAI47_20900 0.45 +0.5 426,288 - IAI47_20900 0.45 -0.6 426,288 - IAI47_20900 0.45 -1.0 426,288 - IAI47_20900 0.45 +0.1 426,288 - IAI47_20900 0.45 +0.7 426,288 - IAI47_20900 0.45 +1.3 426,288 - IAI47_20900 0.45 +0.7 426,288 - IAI47_20900 0.45 +0.1 426,291 + IAI47_20900 0.46 -0.8 426,291 + IAI47_20900 0.46 +0.7 426,292 - IAI47_20900 0.46 +0.7 426,292 - IAI47_20900 0.46 -0.6 426,292 - IAI47_20900 0.46 +0.4 426,306 + IAI47_20900 0.47 +1.5 426,357 + IAI47_20900 0.51 +1.1 426,358 - IAI47_20900 0.51 +0.1 426,358 - IAI47_20900 0.51 -0.1 426,393 + IAI47_20900 0.54 -0.2 426,393 + IAI47_20900 0.54 +1.7 426,394 - IAI47_20900 0.54 -2.4 426,394 - IAI47_20900 0.54 -0.2 426,405 + IAI47_20900 0.55 +0.7 426,406 - IAI47_20900 0.55 +0.6 426,406 - IAI47_20900 0.55 -1.2 426,425 + IAI47_20900 0.56 +2.0 426,426 - IAI47_20900 0.56 -0.3 426,452 + IAI47_20900 0.58 +1.7 426,453 - IAI47_20900 0.58 +0.3 426,453 - IAI47_20900 0.58 +0.2 426,453 - IAI47_20900 0.58 -1.0 426,453 - IAI47_20900 0.58 +0.1 426,453 - IAI47_20900 0.58 -0.6 426,453 - IAI47_20900 0.58 -1.1 426,453 - IAI47_20900 0.58 -0.8 426,453 - IAI47_20900 0.58 +0.1 426,453 - IAI47_20900 0.58 +1.1 426,465 + IAI47_20900 0.59 -1.3 426,537 + IAI47_20900 0.65 +0.0 426,538 - IAI47_20900 0.65 -0.0 426,538 - IAI47_20900 0.65 -0.2 426,538 - IAI47_20900 0.65 +1.0 426,555 - IAI47_20900 0.67 +0.1 426,587 + IAI47_20900 0.69 -2.1 426,656 + IAI47_20900 0.75 +0.5 426,656 + IAI47_20900 0.75 +0.3 426,657 - IAI47_20900 0.75 -0.2 426,657 - IAI47_20900 0.75 +0.7 426,680 + IAI47_20900 0.76 -1.3 426,712 - IAI47_20900 0.79 -0.7 426,726 + IAI47_20900 0.80 +0.7 426,726 + IAI47_20900 0.80 -0.6 426,726 + IAI47_20900 0.80 +0.3 426,726 + IAI47_20900 0.80 +0.7 426,726 + IAI47_20900 0.80 -0.1 426,726 + IAI47_20900 0.80 +1.5 426,726 + IAI47_20900 0.80 -1.9 426,726 + IAI47_20900 0.80 +0.7 426,726 + IAI47_20900 0.80 +2.7 426,727 + IAI47_20900 0.80 +0.5 426,727 - IAI47_20900 0.80 +1.5 426,727 - IAI47_20900 0.80 -1.5 426,727 - IAI47_20900 0.80 -0.4 426,727 - IAI47_20900 0.80 -0.6 426,727 - IAI47_20900 0.80 -0.9 426,727 - IAI47_20900 0.80 +1.1 426,776 + IAI47_20900 0.84 +1.3 426,776 + IAI47_20900 0.84 +0.5 426,777 - IAI47_20900 0.84 -0.7 426,792 + IAI47_20900 0.85 +0.1 426,793 - IAI47_20900 0.85 +0.7 426,794 + IAI47_20900 0.85 -0.7 426,794 + IAI47_20900 0.85 -0.6 426,795 - IAI47_20900 0.86 +0.4 426,813 + IAI47_20900 0.87 +2.0 426,813 + IAI47_20900 0.87 -0.3 426,813 + IAI47_20900 0.87 +0.2 426,814 - IAI47_20900 0.87 +0.7 426,814 - IAI47_20900 0.87 -0.3 426,815 + IAI47_20900 0.87 +0.1 426,816 - IAI47_20900 0.87 +0.9 426,851 + -0.1 426,851 + -0.5 426,851 + -0.3 426,852 - -1.3 426,852 - +1.4 426,852 - -0.8 426,868 + -1.3 426,868 + +1.9 426,868 + +1.9 426,868 + +0.4 426,868 + -0.9 426,868 + +0.2 426,868 + +0.1 426,869 - +0.4 426,869 - +0.3 426,885 + -0.9 426,885 + +0.1 426,886 - -0.3 426,933 - -0.3 426,955 + -0.4 426,956 - -0.2 427,007 + +0.4 427,008 - +0.1 427,015 + +0.1 427,015 + +0.9 427,015 + +0.1 427,015 + -1.3 427,015 + -0.9 427,016 - +0.4 427,016 - +0.7 427,016 - -0.3 427,027 + -0.3 427,027 + +1.4 427,027 + -0.1 427,027 + +0.7 427,028 - +1.3 427,028 - +0.0 427,028 - +0.8 427,068 + -0.7 427,085 - +0.7 427,097 + -0.4 427,142 + IAI47_20905 0.19 -0.8 427,158 + IAI47_20905 0.24 -1.4 427,159 - IAI47_20905 0.24 +0.4 427,159 - IAI47_20905 0.24 -1.9 427,159 - IAI47_20905 0.24 +0.3 427,159 - IAI47_20905 0.24 -0.2 427,203 + IAI47_20905 0.38 -2.4 427,204 - IAI47_20905 0.38 +1.9 427,236 + IAI47_20905 0.48 -0.0 427,237 - IAI47_20905 0.48 -2.6 427,281 - IAI47_20905 0.62 +0.2 427,281 - IAI47_20905 0.62 +1.7 427,320 + IAI47_20905 0.75 +0.4 427,321 - IAI47_20905 0.75 -1.0 427,373 - -0.6 427,418 - -0.0 427,421 - -0.2 427,458 + -0.6 427,458 + +0.9 427,499 + +1.7 427,499 + -0.6 427,500 - -1.6 427,500 - -1.1 427,500 - +0.1 427,501 + +0.5 427,501 + -1.1 427,501 + -1.4 427,501 + -0.4 427,501 + -0.1 427,502 - -0.2 427,502 - +1.0 427,502 - +0.7 427,502 - -0.7 427,518 + -0.3 427,518 + -2.1 427,519 - -0.9 427,519 - +0.0 427,519 - +2.7 427,519 - +0.1 427,519 - +1.1 427,519 - -0.2 427,519 - +0.7 427,519 - +0.8 427,519 - +1.3 427,526 + -0.7 427,526 + -1.8 427,527 - +0.2 427,552 + -1.2 427,552 + +1.0 427,555 + -1.0 427,556 - -0.3 427,556 - +0.1 427,563 - +0.3 427,575 + +0.1 427,575 + +0.9 427,576 - +2.0 427,576 - -0.2 427,576 - -0.3 427,576 - -0.5 427,576 - +1.7 427,578 + -2.8 427,578 + -0.3 427,579 - +0.8 427,579 - -0.4 427,579 - +0.4 427,621 + +0.7 427,649 - +0.1 427,720 + +0.4 427,720 + +0.7 427,721 - -0.4 427,723 + +1.5 427,724 - -1.4 427,724 - +0.2 427,724 - +0.7 427,851 + -0.5 427,851 + +0.7 427,854 - +0.5 427,870 + +0.3 427,870 + -0.3 427,871 - -1.2 427,987 + -0.1 428,092 + IAI47_20910 0.12 -0.6 428,092 + IAI47_20910 0.12 -0.4 428,092 + IAI47_20910 0.12 -2.6 428,092 + IAI47_20910 0.12 +0.7 428,092 + IAI47_20910 0.12 +1.7 428,093 - IAI47_20910 0.12 -0.8 428,135 - IAI47_20910 0.14 -0.2 428,146 + IAI47_20910 0.14 -0.3 428,146 + IAI47_20910 0.14 +0.0 428,146 + IAI47_20910 0.14 +0.7 428,146 + IAI47_20910 0.14 -0.6 428,146 + IAI47_20910 0.14 +0.7 428,146 + IAI47_20910 0.14 +0.4 428,146 + IAI47_20910 0.14 +1.0 428,146 + IAI47_20910 0.14 -1.1 428,147 - IAI47_20910 0.14 +0.5 428,147 - IAI47_20910 0.14 -0.6 428,147 - IAI47_20910 0.14 +0.0 428,147 - IAI47_20910 0.14 -0.3 428,147 - IAI47_20910 0.14 +1.7 428,148 + IAI47_20910 0.14 +1.3 428,148 + IAI47_20910 0.14 +0.8 428,148 + IAI47_20910 0.14 -0.7 428,148 + IAI47_20910 0.14 +0.7 428,148 + IAI47_20910 0.14 +2.5 428,148 + IAI47_20910 0.14 +1.5 428,149 - IAI47_20910 0.14 -1.0 428,149 - IAI47_20910 0.14 -0.3 428,149 - IAI47_20910 0.14 -0.3 428,158 + IAI47_20910 0.15 -0.0 428,173 + IAI47_20910 0.16 +1.3 428,173 + IAI47_20910 0.16 -0.3 428,174 - IAI47_20910 0.16 -2.8 428,174 - IAI47_20910 0.16 -0.4 428,202 + IAI47_20910 0.17 +0.2 428,251 + IAI47_20910 0.19 -0.3 428,251 + IAI47_20910 0.19 +2.2 428,251 + IAI47_20910 0.19 -1.0 428,251 + -0.9 428,251 + IAI47_20910 0.19 -0.0 428,251 + IAI47_20910 0.19 -0.6 428,251 + IAI47_20910 0.19 -1.3 428,251 + IAI47_20910 0.19 +0.1 428,252 - IAI47_20910 0.19 -0.0 428,252 - IAI47_20910 0.19 -0.2 428,252 - IAI47_20910 0.19 +0.7 428,252 - IAI47_20910 0.19 +1.2 428,252 - IAI47_20910 0.19 +0.7 428,252 - IAI47_20910 0.19 -1.3 428,252 - IAI47_20910 0.19 -0.3
Or see this region's nucleotide sequence