Strain Fitness in Pantoea sp. MT58 around IAI47_18050

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,839,915	-		IAI47_18045	0.29	-1.7
3,839,940	-		IAI47_18045	0.31	-1.5
3,839,940	-		IAI47_18045	0.31	-2.9
3,839,995	+		IAI47_18045	0.36	-2.4
3,839,995	+		IAI47_18045	0.36	-0.8
3,839,995	+		IAI47_18045	0.36	-2.5
3,839,995	+		IAI47_18045	0.36	-4.3
3,839,996	-		IAI47_18045	0.36	-1.8
3,839,996	-		IAI47_18045	0.36	-1.8
3,840,006	+		IAI47_18045	0.36	-1.8
3,840,007	-		IAI47_18045	0.36	-3.0
3,840,007	-		IAI47_18045	0.36	-2.8
3,840,049	+		IAI47_18045	0.40	-0.8
3,840,050	-		IAI47_18045	0.40	-3.3
3,840,050	-		IAI47_18045	0.40	-4.8
3,840,050	-		IAI47_18045	0.40	-2.7
3,840,050	-		IAI47_18045	0.40	-4.3
3,840,256	+		IAI47_18045	0.56	-0.2
3,840,335	+		IAI47_18045	0.62	-1.2
3,840,336	-		IAI47_18045	0.62	-3.1
3,840,336	-		IAI47_18045	0.62	-2.9
3,840,336	-		IAI47_18045	0.62	-2.9
3,840,373	+		IAI47_18045	0.65	-2.0
3,840,373	+		IAI47_18045	0.65	+0.8
3,840,373	+		IAI47_18045	0.65	-2.7
3,840,374	-		IAI47_18045	0.65	-1.5
3,840,374	-		IAI47_18045	0.65	-2.4
3,840,491	-		IAI47_18045	0.74	-1.2
3,840,573	-		IAI47_18045	0.81	-3.7
3,840,573	-		IAI47_18045	0.81	-1.2
3,840,573	-		IAI47_18045	0.81	-4.5
3,840,573	-		IAI47_18045	0.81	-0.5
3,840,573	-		IAI47_18045	0.81	-4.5
3,840,625	+		IAI47_18045	0.85	+0.8
3,840,630	+		IAI47_18045	0.85	-2.4
3,840,630	+		IAI47_18045	0.85	-4.5
3,840,630	+		IAI47_18045	0.85	-2.7
3,840,630	+		IAI47_18045	0.85	-2.9
3,840,630	+		IAI47_18045	0.85	+0.8
3,840,630	+		IAI47_18045	0.85	-2.0
3,840,630	+		IAI47_18045	0.85	-2.0
3,840,630	+		IAI47_18045	0.85	-2.4
3,840,630	+		IAI47_18045	0.85	-1.5
3,840,630	+		IAI47_18045	0.85	-1.8
3,840,631	-		IAI47_18045	0.85	-1.5
3,840,631	-		IAI47_18045	0.85	-2.7
3,840,631	-		IAI47_18045	0.85	-4.2
3,840,631	-		IAI47_18045	0.85	-3.3
3,840,631	-		IAI47_18045	0.85	-3.4
3,840,717	+				-2.8
3,840,717	+				-4.6
3,840,717	+				-2.8
3,840,717	+				-1.8
3,840,718	-				-2.4
3,840,718	-				-3.5
3,840,718	-				-1.5
3,840,718	-				-3.1
3,840,740	+				-2.9
3,840,741	-				-2.0
3,840,741	-				-3.3
3,840,741	-				-2.5
3,840,772	+				-1.5
3,840,772	+				-3.5
3,840,772	+				-2.9
3,840,773	-				-2.2
3,840,773	-				-0.5
3,840,773	-				-0.2
3,840,773	-				-1.8
3,840,790	+				-0.8
3,840,808	+				+0.8
3,840,814	+				-1.0
3,840,814	+				-0.6
3,840,814	+				-0.7
3,840,814	+				-0.1
3,840,814	+				-0.2
3,840,814	+				-0.8
3,840,814	+				-0.4
3,840,815	-				-1.0
3,840,818	+				+0.4
3,840,818	+				+1.8
3,840,818	+				+0.7
3,840,819	-				+0.9
3,840,819	-				+1.0
3,840,858	+				-1.2
3,840,858	+				+1.8
3,840,858	+				-0.5
3,840,858	+				-0.3
3,840,858	+				+0.1
3,840,858	+				+0.5
3,840,858	+				+2.1
3,840,859	-				-0.5
3,840,859	-				-0.6
3,840,859	-				+0.6
3,840,916	+				+1.5
3,840,917	-				-2.2
3,840,979	+		IAI47_18050	0.19	+0.8
3,840,979	+		IAI47_18050	0.19	-0.7
3,840,979	+		IAI47_18050	0.19	-0.8
3,840,979	+		IAI47_18050	0.19	+0.6
3,840,980	-		IAI47_18050	0.19	+1.0
3,840,980	-		IAI47_18050	0.19	+0.2
3,841,093	+		IAI47_18050	0.36	+0.1
3,841,093	+		IAI47_18050	0.36	+0.0
3,841,137	+		IAI47_18050	0.43	+0.3
3,841,137	+		IAI47_18050	0.43	+0.3
3,841,137	+		IAI47_18050	0.43	+0.5
3,841,137	+		IAI47_18050	0.43	+0.2
3,841,137	+		IAI47_18050	0.43	+1.5
3,841,138	-		IAI47_18050	0.43	+1.8
3,841,138	-		IAI47_18050	0.43	+0.0
3,841,138	-		IAI47_18050	0.43	-0.5
3,841,138	-		IAI47_18050	0.43	-0.2
3,841,138	-		IAI47_18050	0.43	+1.4
3,841,138	-		IAI47_18050	0.43	-0.2
3,841,138	-		IAI47_18050	0.43	+0.5
3,841,139	+		IAI47_18050	0.43	-0.1
3,841,139	+		IAI47_18050	0.43	-0.1
3,841,139	+		IAI47_18050	0.43	-1.5
3,841,139	+		IAI47_18050	0.43	+2.2
3,841,139	+		IAI47_18050	0.43	-1.0
3,841,140	-		IAI47_18050	0.43	-0.4
3,841,140	-		IAI47_18050	0.43	-0.4
3,841,258	+		IAI47_18050	0.61	-0.7
3,841,258	+		IAI47_18050	0.61	+1.0
3,841,258	+		IAI47_18050	0.61	+1.0
3,841,259	-		IAI47_18050	0.61	-0.5
3,841,301	+		IAI47_18050	0.68	+0.9
3,841,301	+		IAI47_18050	0.68	-0.1
3,841,301	+		IAI47_18050	0.68	+1.0
3,841,301	+		IAI47_18050	0.68	+1.5
3,841,301	+		IAI47_18050	0.68	-1.2
3,841,301	+		IAI47_18050	0.68	-1.1
3,841,301	+		IAI47_18050	0.68	+0.6
3,841,301	+		IAI47_18050	0.68	-0.0
3,841,302	-		IAI47_18050	0.68	+1.0
3,841,302	-		IAI47_18050	0.68	+0.2
3,841,302	-		IAI47_18050	0.68	+1.2
3,841,338	+		IAI47_18050	0.73	+0.6
3,841,338	+		IAI47_18050	0.73	-0.5
3,841,338	+		IAI47_18050	0.73	-0.0
3,841,338	+		IAI47_18050	0.73	+0.4
3,841,338	+		IAI47_18050	0.73	+0.8
3,841,338	+		IAI47_18050	0.73	-0.1
3,841,338	+		IAI47_18050	0.73	+0.1
3,841,338	+		IAI47_18050	0.73	+1.0
3,841,338	+		IAI47_18050	0.73	+0.6
3,841,338	+		IAI47_18050	0.73	-0.5
3,841,338	+		IAI47_18050	0.73	+0.1
3,841,338	+		IAI47_18050	0.73	+2.4
3,841,338	+		IAI47_18050	0.73	+0.2
3,841,338	+		IAI47_18050	0.73	+0.0
3,841,338	+		IAI47_18050	0.73	+0.3
3,841,338	+		IAI47_18050	0.73	+1.8
3,841,339	-		IAI47_18050	0.73	-0.5
3,841,339	-		IAI47_18050	0.73	-1.2
3,841,339	-		IAI47_18050	0.73	+0.4
3,841,339	-		IAI47_18050	0.73	-0.6
3,841,339	-		IAI47_18050	0.73	+0.9
3,841,339	-		IAI47_18050	0.73	-0.8
3,841,339	-		IAI47_18050	0.73	-1.5
3,841,339	-		IAI47_18050	0.73	-0.8
3,841,340	+		IAI47_18050	0.73	+0.1
3,841,340	+		IAI47_18050	0.73	+0.1
3,841,340	+		IAI47_18050	0.73	+1.1
3,841,340	+		IAI47_18050	0.73	+0.9
3,841,340	+		IAI47_18050	0.73	+0.5
3,841,341	-		IAI47_18050	0.74	-0.6
3,841,341	-		IAI47_18050	0.74	+0.4
3,841,341	-		IAI47_18050	0.74	-0.7
3,841,341	-		IAI47_18050	0.74	+0.8
3,841,374	+		IAI47_18050	0.79	-1.2
3,841,389	+		IAI47_18050	0.81	+1.2
3,841,389	+		IAI47_18050	0.81	+1.9
3,841,390	-		IAI47_18050	0.81	+0.9
3,841,415	+		IAI47_18050	0.85	+3.1
3,841,416	-		IAI47_18050	0.85	+1.0
3,841,416	-		IAI47_18050	0.85	-0.1
3,841,416	-		IAI47_18050	0.85	+0.3
3,841,489	-				-2.0
3,841,567	+				-0.7
3,841,568	-				-0.3
3,841,568	-				+0.8
3,841,568	-				+0.3
3,841,586	+				-1.7
3,841,587	-				-0.8
3,841,587	-				+1.4
3,841,587	-				-0.1
3,841,587	-				-0.1
3,841,587	-				+0.2
3,841,587	-				-0.1
3,841,590	+				+1.1
3,841,590	+				+2.2
3,841,590	+				+1.1
3,841,591	-				+0.5
3,841,591	-				+0.3
3,841,611	+				-0.1
3,841,611	+				+0.4
3,841,631	-		IAI47_18055	0.17	+1.5
3,841,708	-		IAI47_18055	0.45	+0.8
3,841,714	-		IAI47_18055	0.47	-0.8
3,841,714	-		IAI47_18055	0.47	-0.2
3,841,732	+		IAI47_18055	0.54	+0.5
3,841,733	-		IAI47_18055	0.54	+0.5
3,841,733	-		IAI47_18055	0.54	+0.5
3,841,733	-		IAI47_18055	0.54	+0.4
3,841,733	-		IAI47_18055	0.54	+1.8
3,841,733	-		IAI47_18055	0.54	+0.1
3,841,733	-		IAI47_18055	0.54	+2.1
3,841,776	+		IAI47_18055	0.70	-0.4
3,841,776	+		IAI47_18055	0.70	-1.2
3,841,776	+		IAI47_18055	0.70	+2.4
3,841,777	-		IAI47_18055	0.70	-0.2
3,841,806	+		IAI47_18055	0.81	-0.3
3,841,857	+				+1.0
3,841,857	+				-1.1
3,841,857	+				+1.8
3,841,857	+				+1.5
3,841,857	+				-0.8
3,841,857	+				-0.2
3,841,857	+				+1.0
3,841,858	-				-0.7
3,841,858	-				+1.8
3,841,858	-				+1.3
3,841,858	-				-0.1
3,841,858	-				+1.4
3,841,858	-				+0.8
3,841,858	-				+0.3
3,841,858	-				+0.5
3,841,858	-				-0.2
3,841,858	-				-0.8
3,841,862	+				+0.4
3,841,863	-				+1.2
3,841,863	-				-0.1
3,841,868	+				+2.2
3,841,868	+				-1.2
3,841,869	-				+0.8
3,841,876	-				+1.1
3,841,876	-				+1.8
3,841,876	-				+0.7
3,841,876	-				+0.5
3,841,876	-				-0.5
3,841,876	-				+0.9
3,841,880	-				+0.8
3,841,889	+				+1.9
3,841,890	-				+0.8
3,841,890	-				+1.0
3,841,890	-				+0.0
3,841,916	+				+0.4
3,841,917	-				+1.4
3,841,917	-				+0.9
3,841,975	+				+0.9
3,841,975	+				-1.1
3,841,976	-				-0.8
3,841,976	-				+0.8
3,842,039	+				+0.8
3,842,047	+				+0.0
3,842,047	+				+0.3
3,842,047	+				+0.6
3,842,048	-				-0.5
3,842,063	+				-0.5
3,842,064	-				+1.2
3,842,075	+				-1.0
3,842,111	+		IAI47_18060	0.11	+0.4
3,842,112	-		IAI47_18060	0.11	-0.2
3,842,112	-		IAI47_18060	0.11	+0.1
3,842,112	-		IAI47_18060	0.11	+0.8
3,842,189	+		IAI47_18060	0.24	-1.5
3,842,190	-		IAI47_18060	0.24	-0.1
3,842,252	+		IAI47_18060	0.35	+0.8
3,842,252	+		IAI47_18060	0.35	-0.5
3,842,252	+		IAI47_18060	0.35	+1.2
3,842,252	+		IAI47_18060	0.35	-0.5
3,842,252	+		IAI47_18060	0.35	+0.2
3,842,253	-		IAI47_18060	0.35	-2.0
3,842,253	-		IAI47_18060	0.35	-0.6
3,842,253	-		IAI47_18060	0.35	+1.6
3,842,253	-		IAI47_18060	0.35	-1.8
3,842,264	+		IAI47_18060	0.37	-0.7
3,842,264	+		IAI47_18060	0.37	+0.6
3,842,264	+		IAI47_18060	0.37	-0.8
3,842,265	-		IAI47_18060	0.37	-0.4
3,842,265	-		IAI47_18060	0.37	-0.5
3,842,265	-		IAI47_18060	0.37	-1.8
3,842,265	-		IAI47_18060	0.37	-0.0
3,842,337	+		IAI47_18060	0.49	+0.4
3,842,337	+		IAI47_18060	0.49	-1.1
3,842,357	+		IAI47_18060	0.53	-0.2
3,842,358	-		IAI47_18060	0.53	+0.6
3,842,375	-		IAI47_18060	0.56	+0.5
3,842,438	+		IAI47_18060	0.66	-2.7
3,842,439	-		IAI47_18060	0.66	-1.8
3,842,439	-		IAI47_18060	0.66	-1.0
3,842,494	+		IAI47_18060	0.76	+0.1
3,842,495	-		IAI47_18060	0.76	-0.4
3,842,496	+		IAI47_18060	0.76	-0.7
3,842,496	+		IAI47_18060	0.76	+0.8
3,842,496	+		IAI47_18060	0.76	+0.3
3,842,496	+		IAI47_18060	0.76	-0.1
3,842,496	+		IAI47_18060	0.76	-0.0
3,842,497	-		IAI47_18060	0.76	+0.4
3,842,497	-		IAI47_18060	0.76	-0.2
3,842,497	-		IAI47_18060	0.76	-0.4