Strain Fitness in Pantoea sp. MT58 around IAI47_17525

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,714,529	+				-0.6
3,714,529	+				-1.8
3,714,556	+				-1.2
3,714,559	+				+0.8
3,714,559	+				-1.5
3,714,559	+				-2.4
3,714,560	-				+0.6
3,714,602	-				-0.4
3,714,602	-				-1.4
3,714,602	-				-0.5
3,714,725	+		IAI47_17520	0.23	-0.5
3,714,725	+		IAI47_17520	0.23	-1.5
3,714,726	-		IAI47_17520	0.23	-0.0
3,714,726	-		IAI47_17520	0.23	-0.6
3,714,830	+		IAI47_17520	0.34	-1.2
3,714,830	+		IAI47_17520	0.34	-0.0
3,714,891	+		IAI47_17520	0.41	+1.1
3,714,892	-		IAI47_17520	0.41	-0.7
3,714,892	-		IAI47_17520	0.41	-0.4
3,714,914	-		IAI47_17520	0.43	+1.0
3,714,934	+		IAI47_17520	0.45	-1.1
3,714,934	+		IAI47_17520	0.45	-1.4
3,714,934	+		IAI47_17520	0.45	-0.8
3,714,935	-		IAI47_17520	0.45	+2.9
3,714,935	-		IAI47_17520	0.45	-0.6
3,714,935	-		IAI47_17520	0.45	-2.0
3,714,935	-		IAI47_17520	0.45	+0.8
3,715,028	+		IAI47_17520	0.55	+0.8
3,715,028	+		IAI47_17520	0.55	-0.2
3,715,028	+		IAI47_17520	0.55	+0.5
3,715,029	-		IAI47_17520	0.55	+1.2
3,715,351	+		IAI47_17520	0.90	-0.7
3,715,351	+		IAI47_17520	0.90	-0.2
3,715,382	+				-1.0
3,715,382	+				+0.7
3,715,382	+				+0.5
3,715,382	+				+2.1
3,715,383	-				-0.0
3,715,383	-				+0.5
3,715,383	-				-0.5
3,715,383	-				+0.4
3,715,383	-				-0.8
3,715,412	-				-0.1
3,715,448	+				+1.1
3,715,448	+				-0.2
3,715,448	+				+0.1
3,715,448	+				-0.7
3,715,448	+				+0.8
3,715,448	+				+0.3
3,715,448	+				+0.1
3,715,449	-				-0.3
3,715,449	-				+0.0
3,715,449	-				-0.9
3,715,449	-				+0.1
3,715,449	-				+1.9
3,715,469	+				-1.1
3,715,469	+				+0.8
3,715,469	+				-1.2
3,715,469	+				+1.2
3,715,469	+				-0.1
3,715,469	+				+0.2
3,715,470	-				-0.8
3,715,470	-				+0.0
3,715,470	-				-0.8
3,715,470	-				+2.4
3,715,470	-				-0.2
3,715,470	-				-0.2
3,715,470	-				+1.0
3,715,470	-				-1.1
3,715,470	-				-0.9
3,715,470	-				-0.8
3,715,470	-				-0.4
3,715,472	-				+0.1
3,715,472	-				+0.3
3,715,478	+				-0.9
3,715,478	+				+2.0
3,715,478	+				+0.2
3,715,479	-				-0.8
3,715,479	-				-0.1
3,715,521	-				+1.1
3,715,527	+				-1.1
3,715,527	+				-1.3
3,715,527	+				+0.5
3,715,528	-				-0.6
3,715,528	-				+0.1
3,715,532	+				-0.6
3,715,532	+				-0.1
3,715,532	+				-1.0
3,715,532	+				-1.7
3,715,532	+				-0.4
3,715,532	+				-0.8
3,715,532	+				-1.8
3,715,532	+				+0.1
3,715,532	+				-1.5
3,715,533	-				-0.6
3,715,533	-				-0.2
3,715,533	-				+0.2
3,715,533	-				-0.2
3,715,533	-				-0.5
3,715,533	-				-1.8
3,715,533	-				-0.5
3,715,533	-				+0.6
3,715,533	-				+1.2
3,715,591	+				-0.2
3,715,592	-				+0.1
3,715,617	-				-2.2
3,715,662	+		IAI47_17525	0.14	-2.5
3,715,663	-		IAI47_17525	0.14	+0.1
3,715,663	-		IAI47_17525	0.14	-1.2
3,715,663	-		IAI47_17525	0.14	-1.7
3,715,663	-		IAI47_17525	0.14	+0.8
3,715,731	+		IAI47_17525	0.20	+0.4
3,715,795	+		IAI47_17525	0.26	-1.4
3,715,795	+		IAI47_17525	0.26	-0.8
3,715,795	+		IAI47_17525	0.26	-1.2
3,715,796	-		IAI47_17525	0.27	+0.8
3,715,796	-		IAI47_17525	0.27	-0.5
3,715,796	-		IAI47_17525	0.27	-0.9
3,715,796	-		IAI47_17525	0.27	-1.1
3,715,796	-		IAI47_17525	0.27	-1.2
3,715,821	+		IAI47_17525	0.29	-0.2
3,715,821	+		IAI47_17525	0.29	-0.2
3,715,821	+		IAI47_17525	0.29	-1.0
3,715,821	+		IAI47_17525	0.29	-2.4
3,715,822	-		IAI47_17525	0.29	+0.4
3,715,822	-		IAI47_17525	0.29	+1.8
3,715,822	-		IAI47_17525	0.29	+0.8
3,715,822	-		IAI47_17525	0.29	-1.0
3,715,822	-		IAI47_17525	0.29	+1.5
3,715,902	+		IAI47_17525	0.36	-1.0
3,715,902	+		IAI47_17525	0.36	+3.1
3,715,902	+		IAI47_17525	0.36	-0.2
3,715,902	+		IAI47_17525	0.36	+0.2
3,715,902	+		IAI47_17525	0.36	-0.8
3,715,902	+		IAI47_17525	0.36	-1.5
3,715,902	+		IAI47_17525	0.36	+1.8
3,715,903	-		IAI47_17525	0.37	+0.8
3,715,903	-		IAI47_17525	0.37	-1.5
3,715,903	-		IAI47_17525	0.37	-1.4
3,715,903	-		IAI47_17525	0.37	-0.1
3,715,903	-		IAI47_17525	0.37	-0.2
3,715,903	-		IAI47_17525	0.37	-1.6
3,715,903	-		IAI47_17525	0.37	-0.8
3,715,903	-		IAI47_17525	0.37	-0.5
3,715,903	-		IAI47_17525	0.37	-0.7
3,715,903	-		IAI47_17525	0.37	+0.2
3,715,903	-		IAI47_17525	0.37	-1.1
3,715,903	-		IAI47_17525	0.37	+0.3
3,715,932	+		IAI47_17525	0.39	-0.2
3,715,932	+		IAI47_17525	0.39	-1.9
3,715,933	-		IAI47_17525	0.39	-2.7
3,715,933	-		IAI47_17525	0.39	-1.5
3,715,933	-		IAI47_17525	0.39	-0.5
3,716,037	+		IAI47_17525	0.49	-1.0
3,716,038	-		IAI47_17525	0.49	-1.5
3,716,102	+		IAI47_17525	0.55	+1.5
3,716,115	+		IAI47_17525	0.56	-1.4
3,716,116	-		IAI47_17525	0.56	-1.8
3,716,116	-		IAI47_17525	0.56	-1.5
3,716,175	+		IAI47_17525	0.62	-0.6
3,716,175	+		IAI47_17525	0.62	+0.5
3,716,175	+		IAI47_17525	0.62	-0.6
3,716,175	+		IAI47_17525	0.62	-0.2
3,716,175	+		IAI47_17525	0.62	-0.9
3,716,175	+		IAI47_17525	0.62	-0.8
3,716,176	-		IAI47_17525	0.62	+0.5
3,716,176	-		IAI47_17525	0.62	-0.9
3,716,176	-		IAI47_17525	0.62	-0.1
3,716,176	-		IAI47_17525	0.62	-0.2
3,716,176	-		IAI47_17525	0.62	-2.4
3,716,176	-		IAI47_17525	0.62	-0.8
3,716,176	-		IAI47_17525	0.62	-0.6
3,716,176	-		IAI47_17525	0.62	-2.0
3,716,176	-		IAI47_17525	0.62	-2.3
3,716,180	+		IAI47_17525	0.62	-1.3
3,716,180	+		IAI47_17525	0.62	-0.9
3,716,180	+		IAI47_17525	0.62	+1.0
3,716,180	+		IAI47_17525	0.62	-0.4
3,716,180	+		IAI47_17525	0.62	-1.8
3,716,181	-		IAI47_17525	0.62	-2.0
3,716,181	-		IAI47_17525	0.62	-1.3
3,716,181	-		IAI47_17525	0.62	-1.7
3,716,181	-		IAI47_17525	0.62	+0.3
3,716,181	-		IAI47_17525	0.62	-1.7
3,716,181	-		IAI47_17525	0.62	-1.8
3,716,186	+		IAI47_17525	0.63	-1.5
3,716,186	+		IAI47_17525	0.63	-1.4
3,716,187	-		IAI47_17525	0.63	+1.2
3,716,187	-		IAI47_17525	0.63	+0.5
3,716,230	+		IAI47_17525	0.67	-1.2
3,716,230	+		IAI47_17525	0.67	-1.4
3,716,230	+		IAI47_17525	0.67	-1.2
3,716,230	+		IAI47_17525	0.67	-1.3
3,716,230	+		IAI47_17525	0.67	+0.1
3,716,230	+		IAI47_17525	0.67	-1.5
3,716,230	+		IAI47_17525	0.67	-0.7
3,716,231	-		IAI47_17525	0.67	+0.1
3,716,231	-		IAI47_17525	0.67	-3.1
3,716,231	-		IAI47_17525	0.67	-0.9
3,716,231	-		IAI47_17525	0.67	-0.5
3,716,231	-		IAI47_17525	0.67	-1.8
3,716,258	+		IAI47_17525	0.70	-0.5
3,716,318	+		IAI47_17525	0.75	-0.7
3,716,318	+		IAI47_17525	0.75	-1.2
3,716,318	+		IAI47_17525	0.75	-0.5
3,716,318	+		IAI47_17525	0.75	+0.4
3,716,318	+		IAI47_17525	0.75	-0.5
3,716,319	-		IAI47_17525	0.75	-0.2
3,716,319	-		IAI47_17525	0.75	+0.2
3,716,321	+		IAI47_17525	0.76	+1.1
3,716,321	+		IAI47_17525	0.76	-0.8
3,716,322	-		IAI47_17525	0.76	-1.2
3,716,322	-		IAI47_17525	0.76	-1.2
3,716,405	+		IAI47_17525	0.83	-0.8
3,716,406	-		IAI47_17525	0.83	-0.2
3,716,477	-				-1.2
3,716,477	-				-0.1
3,716,492	+				+0.6
3,716,492	+				-0.7
3,716,492	+				+0.1
3,716,493	-				-0.7
3,716,493	-				+0.8
3,716,493	-				-0.5
3,716,493	-				-0.2
3,716,580	+				-1.7
3,716,580	+				-0.5
3,716,722	+		IAI47_17530	0.10	-0.2
3,716,723	-		IAI47_17530	0.10	-0.1
3,716,759	+		IAI47_17530	0.13	+2.4
3,716,819	+		IAI47_17530	0.18	+0.6
3,716,819	+		IAI47_17530	0.18	-0.9
3,716,819	+		IAI47_17530	0.18	+0.5
3,716,819	+		IAI47_17530	0.18	+0.8
3,716,819	+		IAI47_17530	0.18	+0.2
3,716,819	+		IAI47_17530	0.18	-0.0
3,716,819	+		IAI47_17530	0.18	-0.8
3,716,820	-		IAI47_17530	0.18	-0.8
3,716,820	-		IAI47_17530	0.18	+0.2
3,716,820	-		IAI47_17530	0.18	+0.2
3,716,820	-		IAI47_17530	0.18	+0.3
3,716,820	-		IAI47_17530	0.18	+0.8
3,716,820	-		IAI47_17530	0.18	+0.3
3,716,820	-		IAI47_17530	0.18	+0.4
3,716,872	-		IAI47_17530	0.22	+1.4
3,716,884	+		IAI47_17530	0.23	+0.2
3,716,913	+		IAI47_17530	0.25	+0.8
3,716,914	-		IAI47_17530	0.25	-1.5
3,717,006	+		IAI47_17530	0.32	+0.1
3,717,006	+		IAI47_17530	0.32	+1.6
3,717,006	+		IAI47_17530	0.32	+0.2
3,717,006	+		IAI47_17530	0.32	+1.2
3,717,006	+		IAI47_17530	0.32	-0.6
3,717,006	+		IAI47_17530	0.32	-0.2
3,717,007	-		IAI47_17530	0.32	-0.4
3,717,007	-		IAI47_17530	0.32	+1.1
3,717,007	-		IAI47_17530	0.32	-0.8
3,717,007	-		IAI47_17530	0.32	-0.2
3,717,007	-		IAI47_17530	0.32	+1.5
3,717,007	-		IAI47_17530	0.32	-0.4
3,717,070	-		IAI47_17530	0.36	-0.9
3,717,212	+		IAI47_17530	0.47	-0.2
3,717,212	+		IAI47_17530	0.47	+1.8
3,717,212	+		IAI47_17530	0.47	-0.3
3,717,213	-		IAI47_17530	0.47	-0.4
3,717,213	-		IAI47_17530	0.47	-0.8
3,717,213	-		IAI47_17530	0.47	+0.6
3,717,213	-		IAI47_17530	0.47	+0.4
3,717,213	-		IAI47_17530	0.47	+0.2
3,717,213	-		IAI47_17530	0.47	-1.3
3,717,213	-		IAI47_17530	0.47	-0.1
3,717,240	+		IAI47_17530	0.49	+0.8
3,717,240	+		IAI47_17530	0.49	+1.8
3,717,240	+		IAI47_17530	0.49	+1.0
3,717,240	+		IAI47_17530	0.49	+1.0
3,717,241	-		IAI47_17530	0.49	-0.5
3,717,241	-		IAI47_17530	0.49	+1.2
3,717,288	+		IAI47_17530	0.53	-0.0
3,717,297	+		IAI47_17530	0.54	+0.2
3,717,297	+		IAI47_17530	0.54	+0.7
3,717,298	-		IAI47_17530	0.54	+1.1
3,717,298	-		IAI47_17530	0.54	+0.5
3,717,298	-		IAI47_17530	0.54	+0.3
3,717,320	+		IAI47_17530	0.55	-0.2
3,717,320	+		IAI47_17530	0.55	+0.5
3,717,320	+		IAI47_17530	0.55	+0.3
3,717,321	-		IAI47_17530	0.55	-0.4
3,717,321	-		IAI47_17530	0.55	-0.8
3,717,381	+		IAI47_17530	0.60	-0.7
3,717,381	+		IAI47_17530	0.60	-0.1
3,717,382	-		IAI47_17530	0.60	+1.1
3,717,414	+		IAI47_17530	0.62	-1.3
3,717,414	+		IAI47_17530	0.62	+1.4
3,717,472	-		IAI47_17530	0.67	-1.1
3,717,472	-		IAI47_17530	0.67	+0.3
3,717,514	-		IAI47_17530	0.70	+1.2