Strain Fitness in Pantoea sp. MT58 around IAI47_17240

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,654,458	+				-1.1
3,654,458	+				-0.2
3,654,459	-				+0.2
3,654,459	-				-2.2
3,654,459	-				+0.8
3,654,476	+				+0.0
3,654,476	+				-0.8
3,654,477	-				-1.6
3,654,481	+				+0.2
3,654,481	+				-2.0
3,654,482	-				+0.5
3,654,482	-				-1.4
3,654,482	-				-0.1
3,654,482	-				+0.8
3,654,565	+		IAI47_17235	0.13	-0.8
3,654,566	-		IAI47_17235	0.13	-1.4
3,654,566	-		IAI47_17235	0.13	-1.7
3,654,644	-		IAI47_17235	0.26	-1.5
3,654,644	-		IAI47_17235	0.26	-1.5
3,654,679	+		IAI47_17235	0.31	-1.5
3,654,679	+		IAI47_17235	0.31	-0.8
3,654,680	-		IAI47_17235	0.31	-0.5
3,654,680	-		IAI47_17235	0.31	-1.9
3,654,680	-		IAI47_17235	0.31	-0.4
3,654,686	+		IAI47_17235	0.32	-2.2
3,654,788	+		IAI47_17235	0.48	-1.8
3,654,789	-		IAI47_17235	0.48	-3.6
3,654,789	-		IAI47_17235	0.48	+0.1
3,654,789	-		IAI47_17235	0.48	-2.2
3,654,790	+		IAI47_17235	0.48	-1.2
3,654,790	+		IAI47_17235	0.48	-2.3
3,654,790	+		IAI47_17235	0.48	-1.8
3,654,791	-		IAI47_17235	0.48	-0.8
3,654,791	-		IAI47_17235	0.48	-2.7
3,654,847	+		IAI47_17235	0.57	-1.8
3,654,885	+		IAI47_17235	0.63	-1.3
3,654,885	+		IAI47_17235	0.63	-1.2
3,654,886	-		IAI47_17235	0.63	-1.1
3,654,886	-		IAI47_17235	0.63	-1.0
3,654,886	-		IAI47_17235	0.63	-1.7
3,654,886	-		IAI47_17235	0.63	-1.7
3,654,886	-		IAI47_17235	0.63	+1.8
3,654,886	-		IAI47_17235	0.63	-1.7
3,654,889	+		IAI47_17235	0.64	-1.9
3,654,889	+		IAI47_17235	0.64	+0.2
3,654,889	+		IAI47_17235	0.64	-2.3
3,654,889	+		IAI47_17235	0.64	-3.3
3,654,889	+		IAI47_17235	0.64	-0.9
3,654,889	+		IAI47_17235	0.64	-0.8
3,654,889	+		IAI47_17235	0.64	-2.5
3,654,889	+		IAI47_17235	0.64	-1.1
3,654,890	-		IAI47_17235	0.64	-0.2
3,654,890	-		IAI47_17235	0.64	-0.3
3,654,890	-		IAI47_17235	0.64	-1.0
3,654,890	-		IAI47_17235	0.64	+0.8
3,654,890	-		IAI47_17235	0.64	-0.5
3,654,913	+		IAI47_17235	0.67	-2.5
3,654,913	+		IAI47_17235	0.67	-1.7
3,654,913	+		IAI47_17235	0.67	-2.8
3,654,914	-		IAI47_17235	0.68	-1.5
3,654,914	-		IAI47_17235	0.68	-1.6
3,654,914	-		IAI47_17235	0.68	-0.5
3,654,914	-		IAI47_17235	0.68	-3.5
3,654,934	-		IAI47_17235	0.71	-1.8
3,654,934	-		IAI47_17235	0.71	-1.7
3,654,934	-		IAI47_17235	0.71	+0.5
3,654,934	-		IAI47_17235	0.71	-1.9
3,654,934	-		IAI47_17235	0.71	-2.4
3,655,015	-		IAI47_17235	0.83	-2.5
3,655,015	-		IAI47_17235	0.83	-2.1
3,655,015	-		IAI47_17235	0.83	-1.3
3,655,043	+		IAI47_17235	0.88	-1.1
3,655,043	+		IAI47_17235	0.88	-0.8
3,655,044	-		IAI47_17235	0.88	-2.7
3,655,044	-		IAI47_17235	0.88	-2.0
3,655,044	-		IAI47_17235	0.88	+0.8
3,655,047	+		IAI47_17235	0.88	-0.4
3,655,048	-		IAI47_17235	0.88	-1.8
3,655,048	-		IAI47_17235	0.88	-0.6
3,655,048	-		IAI47_17235	0.88	-1.5
3,655,048	-		IAI47_17235	0.88	-0.5
3,655,048	-		IAI47_17235	0.88	-2.0
3,655,048	-		IAI47_17235	0.88	-3.2
3,655,048	-		IAI47_17235	0.88	-1.3
3,655,070	+				-0.2
3,655,070	+				-1.5
3,655,070	+				-1.3
3,655,070	+				-1.4
3,655,070	+				+0.8
3,655,070	+				-0.6
3,655,071	-				-1.4
3,655,071	-				-1.2
3,655,071	-				-0.0
3,655,071	-				-1.3
3,655,071	-				+2.4
3,655,093	-				-1.0
3,655,160	+				-1.5
3,655,161	-				+0.0
3,655,223	+				-0.2
3,655,223	+				-1.4
3,655,224	-				+1.8
3,655,224	-				+0.0
3,655,224	-				+0.1
3,655,224	-				-1.5
3,655,224	-				-0.2
3,655,224	-				+0.0
3,655,224	-				-1.5
3,655,227	+				-0.2
3,655,227	+				-2.0
3,655,227	+				-1.2
3,655,228	-				-0.5
3,655,228	-				+0.1
3,655,305	-				-0.2
3,655,309	+				-0.1
3,655,309	+				-1.3
3,655,309	+				-0.0
3,655,309	+				+0.2
3,655,310	-				-0.8
3,655,310	-				+0.5
3,655,310	-				+0.7
3,655,340	+				+2.0
3,655,341	-				-0.0
3,655,394	+				+0.4
3,655,395	-				+0.2
3,655,433	-				-0.0
3,656,442	-				+1.1
3,656,492	-				-0.6
3,656,492	-				+1.2
3,656,492	-				+1.4
3,656,503	+				-0.2
3,656,503	+				-0.0
3,656,503	+				+0.8
3,656,512	+				-1.2
3,656,512	+				-2.0
3,656,512	+				-0.7
3,656,513	-				+0.0
3,656,513	-				+0.1
3,656,542	+				-1.5
3,656,543	-				-2.0
3,656,543	-				-1.2
3,656,543	-				-1.0
3,656,588	-				-3.7
3,656,615	-				-1.7
3,656,646	+		IAI47_17250	0.11	-2.9
3,656,646	+		IAI47_17250	0.11	-1.2
3,656,647	-		IAI47_17250	0.12	-3.0
3,656,647	-		IAI47_17250	0.12	-2.5
3,656,668	+		IAI47_17250	0.13	-1.2
3,656,668	+		IAI47_17250	0.13	-0.8
3,656,668	+		IAI47_17250	0.13	-0.6
3,656,668	+		IAI47_17250	0.13	-1.2
3,656,668	+		IAI47_17250	0.13	-1.8
3,656,668	+		IAI47_17250	0.13	-1.5
3,656,668	+		IAI47_17250	0.13	-0.0
3,656,668	+		IAI47_17250	0.13	-0.5
3,656,668	+		IAI47_17250	0.13	-2.0
3,656,669	-		IAI47_17250	0.13	-2.8
3,656,669	-		IAI47_17250	0.13	-1.2
3,656,669	-		IAI47_17250	0.13	+0.8
3,656,669	-		IAI47_17250	0.13	+0.8
3,656,669	-		IAI47_17250	0.13	-1.7
3,656,717	+		IAI47_17250	0.18	-1.4
3,656,718	-		IAI47_17250	0.18	-1.4
3,656,719	+		IAI47_17250	0.18	-1.2
3,656,719	+		IAI47_17250	0.18	-2.4
3,656,719	+		IAI47_17250	0.18	-1.7
3,656,720	-		IAI47_17250	0.18	-2.0
3,656,720	-		IAI47_17250	0.18	-3.1
3,656,720	-		IAI47_17250	0.18	-2.0
3,656,740	+		IAI47_17250	0.20	-2.2
3,656,740	+		IAI47_17250	0.20	-2.8
3,656,740	+		IAI47_17250	0.20	+0.8
3,656,741	-		IAI47_17250	0.20	-1.4
3,656,741	-		IAI47_17250	0.20	-1.5
3,656,741	-		IAI47_17250	0.20	-2.4
3,656,741	-		IAI47_17250	0.20	-1.8
3,656,777	+		IAI47_17250	0.23	-1.8
3,656,777	+		IAI47_17250	0.23	-1.8
3,656,777	+		IAI47_17250	0.23	-2.5
3,656,777	+		IAI47_17250	0.23	-2.7
3,656,777	+		IAI47_17250	0.23	-2.4
3,656,777	+		IAI47_17250	0.23	-2.7
3,656,778	-		IAI47_17250	0.23	-2.0
3,656,778	-		IAI47_17250	0.23	-1.5
3,656,779	+		IAI47_17250	0.23	-1.8
3,656,779	+		IAI47_17250	0.23	-1.7
3,656,779	+		IAI47_17250	0.23	-1.2
3,656,779	+		IAI47_17250	0.23	-1.5
3,656,779	+		IAI47_17250	0.23	+0.8
3,656,779	+		IAI47_17250	0.23	-2.4
3,656,779	+		IAI47_17250	0.23	-0.2
3,656,780	-		IAI47_17250	0.23	-3.3
3,656,780	-		IAI47_17250	0.23	-4.0
3,656,780	-		IAI47_17250	0.23	-1.4
3,656,780	-		IAI47_17250	0.23	-0.8
3,656,780	-		IAI47_17250	0.23	-1.7
3,656,780	-		IAI47_17250	0.23	-1.5
3,656,780	-		IAI47_17250	0.23	-0.8
3,656,780	-		IAI47_17250	0.23	-1.6
3,656,780	-		IAI47_17250	0.23	-1.0
3,656,780	-		IAI47_17250	0.23	-0.6
3,656,780	-		IAI47_17250	0.23	-3.0
3,656,780	-		IAI47_17250	0.23	-1.8
3,656,780	-		IAI47_17250	0.23	-3.2
3,656,780	-		IAI47_17250	0.23	-0.8
3,656,780	-		IAI47_17250	0.23	-2.5
3,656,822	+		IAI47_17250	0.27	-0.8