Strain Fitness in Pantoea sp. MT58 around IAI47_16515

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,498,036	-				-0.5
3,498,036	-				+0.5
3,498,047	+				-0.7
3,498,047	+				-0.9
3,498,047	+				-0.4
3,498,047	+				+1.2
3,498,047	+				+0.1
3,498,047	+				-1.2
3,498,048	-				+1.0
3,498,048	-				-0.6
3,498,048	-				-0.6
3,498,048	-				-1.2
3,498,051	+				-0.6
3,498,051	+				-1.3
3,498,101	+				-0.7
3,498,141	+				-1.3
3,498,142	-				+0.4
3,498,161	-				-0.7
3,498,189	+		IAI47_16510	0.11	-0.8
3,498,190	-		IAI47_16510	0.11	-0.2
3,498,219	+		IAI47_16510	0.15	-0.2
3,498,219	+		IAI47_16510	0.15	-0.4
3,498,323	+		IAI47_16510	0.28	-0.4
3,498,323	+		IAI47_16510	0.28	-1.8
3,498,324	-		IAI47_16510	0.28	+0.8
3,498,324	-		IAI47_16510	0.28	+0.2
3,498,324	-		IAI47_16510	0.28	-0.2
3,498,324	-		IAI47_16510	0.28	+0.0
3,498,324	-		IAI47_16510	0.28	+0.4
3,498,362	+		IAI47_16510	0.33	-0.1
3,498,362	+		IAI47_16510	0.33	+0.4
3,498,362	+		IAI47_16510	0.33	+1.9
3,498,363	-		IAI47_16510	0.33	+1.1
3,498,363	-		IAI47_16510	0.33	-0.7
3,498,363	-		IAI47_16510	0.33	+0.0
3,498,363	-		IAI47_16510	0.33	-1.1
3,498,363	-		IAI47_16510	0.33	+0.8
3,498,365	+		IAI47_16510	0.33	+2.2
3,498,365	+		IAI47_16510	0.33	-0.8
3,498,365	+		IAI47_16510	0.33	+0.8
3,498,365	+		IAI47_16510	0.33	-0.2
3,498,365	+		IAI47_16510	0.33	-1.6
3,498,365	+		IAI47_16510	0.33	-0.7
3,498,365	+		IAI47_16510	0.33	+2.1
3,498,366	-		IAI47_16510	0.33	+0.3
3,498,366	-		IAI47_16510	0.33	+0.3
3,498,366	-		IAI47_16510	0.33	-0.7
3,498,366	-		IAI47_16510	0.33	-0.8
3,498,366	-		IAI47_16510	0.33	+0.4
3,498,366	-		IAI47_16510	0.33	+0.3
3,498,366	-		IAI47_16510	0.33	+0.4
3,498,366	-		IAI47_16510	0.33	-0.2
3,498,366	-		IAI47_16510	0.33	+0.1
3,498,366	-		IAI47_16510	0.33	+1.4
3,498,414	+		IAI47_16510	0.39	-0.8
3,498,414	+		IAI47_16510	0.39	-0.4
3,498,414	+		IAI47_16510	0.39	-0.1
3,498,414	+		IAI47_16510	0.39	-1.0
3,498,414	+		IAI47_16510	0.39	+1.3
3,498,414	+		IAI47_16510	0.39	+0.2
3,498,414	+		IAI47_16510	0.39	+0.4
3,498,414	+		IAI47_16510	0.39	+0.5
3,498,414	+		IAI47_16510	0.39	+0.1
3,498,414	+		IAI47_16510	0.39	-0.2
3,498,415	-		IAI47_16510	0.39	+0.5
3,498,415	-		IAI47_16510	0.39	-1.0
3,498,415	-		IAI47_16510	0.39	+0.8
3,498,415	-		IAI47_16510	0.39	-0.7
3,498,415	-		IAI47_16510	0.39	+1.8
3,498,415	-		IAI47_16510	0.39	-0.4
3,498,415	-		IAI47_16510	0.39	-0.4
3,498,416	+		IAI47_16510	0.40	-0.7
3,498,416	+		IAI47_16510	0.40	-0.0
3,498,416	+		IAI47_16510	0.40	+1.1
3,498,417	-		IAI47_16510	0.40	+0.1
3,498,417	-		IAI47_16510	0.40	+0.3
3,498,443	+		IAI47_16510	0.43	-1.2
3,498,444	-		IAI47_16510	0.43	+0.3
3,498,444	-		IAI47_16510	0.43	+0.8
3,498,474	+		IAI47_16510	0.47	-1.5
3,498,474	+		IAI47_16510	0.47	+0.2
3,498,474	+		IAI47_16510	0.47	-1.2
3,498,474	+		IAI47_16510	0.47	-0.5
3,498,474	+		IAI47_16510	0.47	+0.5
3,498,474	+		IAI47_16510	0.47	+0.2
3,498,475	-		IAI47_16510	0.47	+1.1
3,498,475	-		IAI47_16510	0.47	-0.1
3,498,500	+		IAI47_16510	0.50	-0.1
3,498,501	-		IAI47_16510	0.50	+0.6
3,498,551	+		IAI47_16510	0.57	+1.3
3,498,552	-		IAI47_16510	0.57	+0.8
3,498,552	-		IAI47_16510	0.57	-1.2
3,498,578	-		IAI47_16510	0.60	+0.9
3,498,587	+		IAI47_16510	0.61	+0.8
3,498,596	+		IAI47_16510	0.62	-0.6
3,498,650	-		IAI47_16510	0.69	-0.0
3,498,655	-		IAI47_16510	0.70	+0.6
3,498,666	+		IAI47_16510	0.71	-0.2
3,498,667	-		IAI47_16510	0.71	-0.3
3,498,667	-		IAI47_16510	0.71	-0.4
3,498,667	-		IAI47_16510	0.71	-1.3
3,498,678	+		IAI47_16510	0.72	-0.7
3,498,704	+		IAI47_16510	0.76	-0.8
3,498,704	+		IAI47_16510	0.76	-1.6
3,498,705	-		IAI47_16510	0.76	-0.3
3,498,731	+		IAI47_16510	0.79	-0.7
3,498,731	+		IAI47_16510	0.79	+0.1
3,498,731	+		IAI47_16510	0.79	-0.5
3,498,731	+		IAI47_16510	0.79	-0.1
3,498,732	-		IAI47_16510	0.79	+1.5
3,498,770	+		IAI47_16510	0.84	-0.0
3,498,770	+		IAI47_16510	0.84	+1.3
3,498,770	+		IAI47_16510	0.84	-0.4
3,498,770	+		IAI47_16510	0.84	+0.3
3,498,770	+		IAI47_16510	0.84	+0.8
3,498,770	+		IAI47_16510	0.84	+0.7
3,498,770	+		IAI47_16510	0.84	-0.2
3,498,770	+		IAI47_16510	0.84	-0.7
3,498,771	-		IAI47_16510	0.84	-0.4
3,498,771	-		IAI47_16510	0.84	-0.7
3,498,771	-		IAI47_16510	0.84	+0.5
3,498,771	-		IAI47_16510	0.84	-2.0
3,498,771	-		IAI47_16510	0.84	-1.5
3,498,771	-		IAI47_16510	0.84	+0.1
3,498,771	-		IAI47_16510	0.84	+2.1
3,498,774	+		IAI47_16510	0.84	+0.9
3,498,774	+		IAI47_16510	0.84	-0.2
3,498,774	+		IAI47_16510	0.84	+0.5
3,498,774	+		IAI47_16510	0.84	-0.3
3,498,774	+		IAI47_16510	0.84	-0.4
3,498,774	+		IAI47_16510	0.84	-0.2
3,498,774	+		IAI47_16510	0.84	-0.6
3,498,775	-		IAI47_16510	0.85	+0.4
3,498,775	-		IAI47_16510	0.85	+2.8
3,498,775	-		IAI47_16510	0.85	-0.2
3,498,775	-		IAI47_16510	0.85	+1.5
3,498,775	-		IAI47_16510	0.85	+0.6
3,498,775	-		IAI47_16510	0.85	+1.0
3,498,775	-		IAI47_16510	0.85	+1.0
3,498,775	-		IAI47_16510	0.85	-0.2
3,498,775	-		IAI47_16510	0.85	-0.7
3,498,892	+				+0.5
3,498,907	+				+1.6
3,498,943	+				+0.6
3,498,943	+				-0.4
3,498,943	+				-0.2
3,498,943	+				+0.1
3,498,943	+				+0.5
3,498,943	+				+0.1
3,498,943	+				-0.1
3,498,943	+				+0.8
3,498,943	+				-0.2
3,498,943	+				+0.5
3,498,943	+				-0.2
3,498,944	-				+0.8
3,498,944	-				-0.8
3,498,944	-				+1.3
3,498,944	-				-0.2
3,498,944	-				+1.0
3,498,944	-				-0.1
3,498,944	-				-0.2
3,498,944	-				+1.2
3,498,944	-				+0.8
3,498,944	-				+0.8
3,498,945	+				-0.2
3,498,945	+				+1.2
3,498,945	+				+0.0
3,498,945	+				+0.3
3,498,946	-				-0.1
3,498,946	-				-0.9
3,498,954	+				+1.8
3,498,965	+				-1.0
3,498,965	+				+0.6
3,498,965	+				+0.6
3,498,966	-				+0.6
3,498,966	-				+0.2
3,498,966	-				+1.0
3,498,966	-				+0.8
3,498,966	-				-0.2
3,498,966	-				+0.1
3,498,968	-				-2.7
3,498,968	-				-0.2
3,499,012	+				+0.5
3,499,012	+				+0.6
3,499,102	+		IAI47_16515	0.30	+0.8
3,499,145	+		IAI47_16515	0.44	+0.3
3,499,146	-		IAI47_16515	0.45	+0.3
3,499,157	+		IAI47_16515	0.48	-0.2
3,499,157	+		IAI47_16515	0.48	+0.1
3,499,158	-		IAI47_16515	0.49	+1.3
3,499,158	-		IAI47_16515	0.49	+0.2
3,499,158	-		IAI47_16515	0.49	-0.5
3,499,164	+		IAI47_16515	0.50	+0.8
3,499,164	+		IAI47_16515	0.50	-0.2
3,499,164	+		IAI47_16515	0.50	+0.8
3,499,164	+		IAI47_16515	0.50	+0.0
3,499,164	+		IAI47_16515	0.50	+0.3
3,499,165	-		IAI47_16515	0.51	+0.2
3,499,165	-		IAI47_16515	0.51	+0.8
3,499,165	-		IAI47_16515	0.51	-0.8
3,499,190	+		IAI47_16515	0.59	+0.2
3,499,227	-		IAI47_16515	0.71	-0.9
3,499,252	+		IAI47_16515	0.80	+0.8
3,499,267	+		IAI47_16515	0.84	-1.2
3,499,267	+		IAI47_16515	0.84	-0.2
3,499,267	+		IAI47_16515	0.84	+2.2
3,499,267	+		IAI47_16515	0.84	-0.4
3,499,267	+		IAI47_16515	0.84	-0.2
3,499,267	+		IAI47_16515	0.84	+1.5
3,499,267	+		IAI47_16515	0.84	-1.2
3,499,268	-		IAI47_16515	0.85	+0.8
3,499,268	-		IAI47_16515	0.85	+0.4
3,499,268	-		IAI47_16515	0.85	+0.1
3,499,268	-		IAI47_16515	0.85	+0.2
3,499,268	-		IAI47_16515	0.85	+0.6
3,499,277	+		IAI47_16515	0.88	+0.2
3,499,277	+		IAI47_16515	0.88	-0.5
3,499,277	+		IAI47_16515	0.88	-0.5
3,499,278	-		IAI47_16515	0.88	-0.7
3,499,278	-		IAI47_16515	0.88	-0.9
3,499,278	-		IAI47_16515	0.88	-0.7
3,499,278	-		IAI47_16515	0.88	+1.2
3,499,278	-		IAI47_16515	0.88	-0.0
3,499,296	+				-0.8
3,499,296	+				+2.8
3,499,338	-				+1.0
3,499,338	-				+0.2
3,499,338	-				+2.0
3,499,379	+		IAI47_16520	0.11	+0.2
3,499,379	+		IAI47_16520	0.11	+1.0
3,499,380	-		IAI47_16520	0.11	+0.0
3,499,380	-		IAI47_16520	0.11	-0.2
3,499,380	-		IAI47_16520	0.11	+0.8
3,499,380	-		IAI47_16520	0.11	+1.8
3,499,380	-		IAI47_16520	0.11	+0.8
3,499,385	-		IAI47_16520	0.12	-1.6
3,499,385	-		IAI47_16520	0.12	-2.2
3,499,390	+		IAI47_16520	0.14	+0.2
3,499,390	+		IAI47_16520	0.14	-0.1
3,499,390	+		IAI47_16520	0.14	-1.1
3,499,391	-		IAI47_16520	0.14	-1.2
3,499,391	-		IAI47_16520	0.14	+0.2
3,499,391	-		IAI47_16520	0.14	-2.8
3,499,466	-		IAI47_16520	0.31	-0.9
3,499,466	-		IAI47_16520	0.31	-1.6
3,499,466	-		IAI47_16520	0.31	+0.8
3,499,483	+		IAI47_16520	0.35	+0.2
3,499,484	-		IAI47_16520	0.36	-0.0
3,499,502	+		IAI47_16520	0.40	-0.2
3,499,502	+		IAI47_16520	0.40	-3.1
3,499,503	-		IAI47_16520	0.40	-1.1
3,499,503	-		IAI47_16520	0.40	-0.8
3,499,503	-		IAI47_16520	0.40	-0.6
3,499,503	-		IAI47_16520	0.40	-0.2
3,499,518	-		IAI47_16520	0.44	+0.8
3,499,521	+		IAI47_16520	0.44	-1.4
3,499,521	+		IAI47_16520	0.44	+1.3
3,499,521	+		IAI47_16520	0.44	-2.2
3,499,521	+		IAI47_16520	0.44	-0.0
3,499,522	-		IAI47_16520	0.45	-1.2
3,499,522	-		IAI47_16520	0.45	+0.8
3,499,529	+		IAI47_16520	0.46	+0.0
3,499,529	+		IAI47_16520	0.46	-0.5
3,499,529	+		IAI47_16520	0.46	+0.8
3,499,529	+		IAI47_16520	0.46	-1.1
3,499,529	+		IAI47_16520	0.46	+0.8
3,499,529	+		IAI47_16520	0.46	-1.1
3,499,530	-		IAI47_16520	0.46	+1.8
3,499,530	-		IAI47_16520	0.46	-2.2
3,499,530	-		IAI47_16520	0.46	+1.5
3,499,570	+		IAI47_16520	0.56	-1.6
3,499,570	+		IAI47_16520	0.56	+0.5
3,499,586	+		IAI47_16520	0.60	-0.0
3,499,586	+		IAI47_16520	0.60	+1.1
3,499,586	+		IAI47_16520	0.60	-0.2
3,499,586	+		IAI47_16520	0.60	+0.8
3,499,586	+		IAI47_16520	0.60	+0.5
3,499,586	+		IAI47_16520	0.60	-1.0
3,499,587	-		IAI47_16520	0.60	+0.8
3,499,587	-		IAI47_16520	0.60	-0.2
3,499,587	-		IAI47_16520	0.60	-0.2
3,499,587	-		IAI47_16520	0.60	+0.3
3,499,587	-		IAI47_16520	0.60	-1.2
3,499,604	+		IAI47_16520	0.64	-1.8
3,499,622	+		IAI47_16520	0.68	-0.7
3,499,622	+		IAI47_16520	0.68	+1.8
3,499,622	+		IAI47_16520	0.68	+0.2
3,499,627	+		IAI47_16520	0.69	-1.2
3,499,627	+		IAI47_16520	0.69	+0.8
3,499,627	+		IAI47_16520	0.69	-0.4
3,499,628	-		IAI47_16520	0.69	+0.8
3,499,628	-		IAI47_16520	0.69	+0.0
3,499,628	-		IAI47_16520	0.69	-0.8
3,499,628	-		IAI47_16520	0.69	-0.6
3,499,631	+		IAI47_16520	0.70	+0.2
3,499,632	-		IAI47_16520	0.70	+0.8
3,499,651	+		IAI47_16520	0.75	+0.8
3,499,652	-		IAI47_16520	0.75	-0.6
3,499,709	+		IAI47_16520	0.88	+0.1
3,499,709	+		IAI47_16520	0.88	-0.1
3,499,710	-		IAI47_16520	0.89	+2.3
3,499,710	-		IAI47_16520	0.89	+0.8
3,499,710	-		IAI47_16520	0.89	-0.9
3,499,710	-		IAI47_16520	0.89	-1.8
3,499,710	-		IAI47_16520	0.89	+0.2
3,499,718	+				-1.6
3,499,727	+				-0.6
3,499,727	+				-1.0
3,499,742	+				-0.7
3,499,742	+				+0.4
3,499,742	+				-1.8
3,499,742	+				-1.8
3,499,742	+				-0.6
3,499,743	-				+0.8
3,499,743	-				-0.8
3,499,852	+		IAI47_16525	0.14	-0.5
3,499,852	+		IAI47_16525	0.14	+0.6
3,499,866	+		IAI47_16525	0.16	+2.3
3,499,866	+		IAI47_16525	0.16	-0.6
3,499,866	+		IAI47_16525	0.16	-1.2
3,499,867	-		IAI47_16525	0.16	-0.1
3,499,867	-		IAI47_16525	0.16	-0.4
3,499,867	-		IAI47_16525	0.16	+0.8
3,499,867	-		IAI47_16525	0.16	+1.3
3,499,868	+		IAI47_16525	0.16	+1.6
3,499,868	+		IAI47_16525	0.16	-1.2
3,499,868	+		IAI47_16525	0.16	+1.8
3,499,869	-		IAI47_16525	0.16	+0.0
3,499,869	-		IAI47_16525	0.16	+0.0
3,499,873	+		IAI47_16525	0.17	-0.5
3,499,873	+		IAI47_16525	0.17	+0.8
3,499,873	+		IAI47_16525	0.17	+0.1
3,499,873	+		IAI47_16525	0.17	+0.1
3,499,874	-		IAI47_16525	0.17	-0.4
3,499,874	-		IAI47_16525	0.17	+0.4
3,499,874	-		IAI47_16525	0.17	-0.8
3,499,874	-		IAI47_16525	0.17	+1.1
3,499,875	+		IAI47_16525	0.17	+0.2
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