Strain Fitness in Pantoea sp. MT58 around IAI47_14700

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,100,667	+				-0.2
3,100,740	+		IAI47_14690	0.12	-0.8
3,100,740	+		IAI47_14690	0.12	-0.6
3,100,741	-		IAI47_14690	0.12	-0.6
3,100,782	+		IAI47_14690	0.18	-2.7
3,100,783	-		IAI47_14690	0.19	-1.6
3,100,807	+		IAI47_14690	0.22	+0.8
3,100,807	+		IAI47_14690	0.22	-0.9
3,100,807	+		IAI47_14690	0.22	-3.2
3,100,807	+		IAI47_14690	0.22	-0.8
3,100,807	+		IAI47_14690	0.22	-2.2
3,100,807	+		IAI47_14690	0.22	+0.0
3,100,807	+		IAI47_14690	0.22	-1.2
3,100,807	+		IAI47_14690	0.22	-1.6
3,100,808	-		IAI47_14690	0.23	+0.8
3,100,808	-		IAI47_14690	0.23	-0.2
3,100,808	-		IAI47_14690	0.23	-1.8
3,100,808	-		IAI47_14690	0.23	-2.4
3,100,808	-		IAI47_14690	0.23	-2.6
3,100,848	+		IAI47_14690	0.29	+0.8
3,100,848	+		IAI47_14690	0.29	-0.2
3,100,849	-		IAI47_14690	0.29	-1.8
3,100,854	+		IAI47_14690	0.30	-0.2
3,100,854	+		IAI47_14690	0.30	+2.4
3,100,854	+		IAI47_14690	0.30	-2.4
3,100,854	+		IAI47_14690	0.30	-2.8
3,100,855	-		IAI47_14690	0.30	-0.6
3,100,915	+		IAI47_14690	0.40	-1.6
3,100,915	+		IAI47_14690	0.40	-0.6
3,100,929	+		IAI47_14690	0.42	-1.2
3,100,929	+		IAI47_14690	0.42	-0.8
3,100,930	-		IAI47_14690	0.42	-0.2
3,100,930	-		IAI47_14690	0.42	-1.9
3,100,930	-		IAI47_14690	0.42	-2.0
3,100,930	-		IAI47_14690	0.42	-0.2
3,101,148	-		IAI47_14690	0.78	-0.2
3,101,148	-		IAI47_14690	0.78	-0.2
3,101,163	+		IAI47_14690	0.80	-0.8
3,101,163	+		IAI47_14690	0.80	-1.2
3,101,164	-		IAI47_14690	0.80	-0.9
3,101,164	-		IAI47_14690	0.80	-1.2
3,101,264	-				-1.8
3,101,281	+				-0.6
3,101,281	+				-1.2
3,101,281	+				-0.2
3,101,281	+				-1.2
3,101,281	+				-0.2
3,101,281	+				-2.2
3,101,282	-				-0.8
3,101,282	-				-2.0
3,101,282	-				-0.8
3,101,282	-				-3.0
3,101,282	-				-0.8
3,101,282	-				-1.6
3,101,282	-				-2.2
3,101,321	+		IAI47_14695	0.12	-2.0
3,101,322	-		IAI47_14695	0.12	+0.0
3,101,334	+		IAI47_14695	0.15	-1.8
3,101,334	+		IAI47_14695	0.15	-0.8
3,101,334	+		IAI47_14695	0.15	-0.2
3,101,335	-		IAI47_14695	0.16	-1.6
3,101,335	-		IAI47_14695	0.16	-1.2
3,101,357	+		IAI47_14695	0.22	-0.2
3,101,357	+		IAI47_14695	0.22	-0.8
3,101,358	-		IAI47_14695	0.23	-1.2
3,101,358	-		IAI47_14695	0.23	-2.4
3,101,358	-		IAI47_14695	0.23	+0.1
3,101,389	+		IAI47_14695	0.32	-2.0
3,101,389	+		IAI47_14695	0.32	-2.9
3,101,417	+		IAI47_14695	0.41	-1.2
3,101,417	+		IAI47_14695	0.41	+0.8
3,101,417	+		IAI47_14695	0.41	-2.4
3,101,417	+		IAI47_14695	0.41	+0.2
3,101,418	-		IAI47_14695	0.41	-0.8
3,101,418	-		IAI47_14695	0.41	-1.6
3,101,485	+		IAI47_14695	0.61	+0.8
3,101,485	+		IAI47_14695	0.61	-1.0
3,101,485	+		IAI47_14695	0.61	-0.8
3,101,486	-		IAI47_14695	0.62	-0.8
3,101,486	-		IAI47_14695	0.62	-0.2
3,101,518	+		IAI47_14695	0.71	-1.5
3,101,557	+		IAI47_14695	0.83	-0.8
3,101,592	+				-0.9
3,101,592	+				+0.4
3,101,593	-				-0.8
3,101,611	-				-2.0
3,101,611	-				-1.0
3,101,611	-				-0.2
3,101,631	+				+0.4
3,101,638	+				-1.1
3,101,639	-				-1.1
3,101,664	+				-0.2
3,101,683	+				-2.4
3,101,852	+		IAI47_14700	0.25	-1.0
3,101,853	-		IAI47_14700	0.26	-0.2
3,101,853	-		IAI47_14700	0.26	-1.6
3,101,876	+		IAI47_14700	0.28	-0.2
3,101,887	+		IAI47_14700	0.29	-0.2
3,101,904	+		IAI47_14700	0.31	-1.6
3,101,980	+		IAI47_14700	0.40	-1.8
3,101,980	+		IAI47_14700	0.40	+0.0
3,101,980	+				-1.6
3,101,980	+		IAI47_14700	0.40	+0.4
3,101,981	-		IAI47_14700	0.40	-2.6
3,101,981	-		IAI47_14700	0.40	-0.2
3,101,981	-		IAI47_14700	0.40	-2.7
3,101,987	+		IAI47_14700	0.41	-1.2
3,101,988	+		IAI47_14700	0.41	-0.2
3,101,988	+		IAI47_14700	0.41	-1.2
3,101,992	+		IAI47_14700	0.41	-0.2
3,101,992	+		IAI47_14700	0.41	-1.6
3,101,992	+		IAI47_14700	0.41	-2.8
3,101,992	+		IAI47_14700	0.41	+0.2
3,101,993	-		IAI47_14700	0.41	+0.8
3,102,001	+		IAI47_14700	0.42	-0.2
3,102,001	+		IAI47_14700	0.42	-1.7
3,102,001	+		IAI47_14700	0.42	-1.4
3,102,002	-		IAI47_14700	0.42	-0.2
3,102,002	-		IAI47_14700	0.42	+2.2
3,102,002	-		IAI47_14700	0.42	-2.6
3,102,012	+		IAI47_14700	0.43	-2.6
3,102,073	+		IAI47_14700	0.50	-1.0
3,102,087	+		IAI47_14700	0.52	+0.8
3,102,155	-		IAI47_14700	0.60	-0.2
3,102,165	+		IAI47_14700	0.61	-3.1
3,102,166	-		IAI47_14700	0.61	-2.6
3,102,178	-		IAI47_14700	0.62	-2.7
3,102,185	-		IAI47_14700	0.63	-0.0
3,102,246	+		IAI47_14700	0.70	+0.8
3,102,246	+		IAI47_14700	0.70	+0.9
3,102,249	+		IAI47_14700	0.70	-0.8
3,102,249	+		IAI47_14700	0.70	-1.6
3,102,249	+		IAI47_14700	0.70	-0.8
3,102,250	-		IAI47_14700	0.70	-1.2
3,102,250	-		IAI47_14700	0.70	+0.8
3,102,250	-		IAI47_14700	0.70	-0.2
3,102,250	-		IAI47_14700	0.70	-1.8
3,102,250	-		IAI47_14700	0.70	-0.2
3,102,250	-		IAI47_14700	0.70	+0.8
3,102,256	+		IAI47_14700	0.71	-1.2
3,102,257	-		IAI47_14700	0.71	-0.6
3,102,257	-		IAI47_14700	0.71	-1.2
3,102,257	-		IAI47_14700	0.71	-0.8
3,102,258	+		IAI47_14700	0.71	-1.6
3,102,258	+		IAI47_14700	0.71	-1.6
3,102,258	+		IAI47_14700	0.71	+0.4
3,102,259	-		IAI47_14700	0.71	-0.6
3,102,259	-		IAI47_14700	0.71	-2.4
3,102,270	+		IAI47_14700	0.73	-0.8
3,102,271	-		IAI47_14700	0.73	-0.6
3,102,319	+		IAI47_14700	0.78	-0.8
3,102,319	+		IAI47_14700	0.78	-1.2
3,102,320	-		IAI47_14700	0.78	+0.8
3,102,377	-		IAI47_14700	0.85	-0.2
3,102,464	+				-1.6
3,102,464	+				-2.0
3,102,465	-				-0.8
3,102,502	+				-0.5
3,102,502	+				+0.4
3,102,502	+				-0.0
3,102,502	+				-1.6
3,102,502	+				-0.2
3,102,502	+				+1.1
3,102,502	+				+0.3
3,102,503	-				-0.6
3,102,503	-				+0.4
3,102,503	-				-0.6
3,102,503	-				-0.8
3,102,524	+				-0.6
3,102,524	+				-0.2
3,102,524	+				+0.2
3,102,525	-				-0.3
3,102,568	-				+0.0
3,102,577	+				-0.2
3,102,578	-				-1.1
3,102,578	-				-1.4
3,102,584	+				-0.2
3,102,585	-				+0.2
3,102,585	-				-0.6
3,102,613	+				+2.8
3,102,613	+				+0.0
3,102,613	+				-0.2
3,102,613	+				+0.1
3,102,613	+				+0.1
3,102,614	-				-0.6
3,102,632	+				-0.6
3,102,633	-				-0.8
3,102,654	+				-1.6
3,102,657	+				+1.5
3,102,658	-				+0.3
3,102,732	+				+0.2
3,102,733	-				+0.8
3,102,757	+				-0.1
3,102,757	+				+1.8
3,102,758	-				-1.2
3,102,758	-				+0.8
3,102,758	-				+0.2
3,102,770	+				+0.3
3,102,770	+				-0.2
3,102,771	-				-0.8
3,102,814	+		IAI47_14705	0.12	+0.8
3,102,814	+		IAI47_14705	0.12	+0.8
3,102,814	+		IAI47_14705	0.12	+1.5
3,102,814	+		IAI47_14705	0.12	-0.6
3,102,814	+		IAI47_14705	0.12	-0.5
3,102,815	-		IAI47_14705	0.12	+0.8
3,102,815	-		IAI47_14705	0.12	+0.0
3,102,815	-		IAI47_14705	0.12	+0.6
3,102,815	-		IAI47_14705	0.12	+0.8
3,102,815	-		IAI47_14705	0.12	-1.1
3,102,815	-		IAI47_14705	0.12	+1.2
3,102,815	-		IAI47_14705	0.12	+0.0
3,102,876	+		IAI47_14705	0.17	+0.5
3,102,885	-		IAI47_14705	0.18	+1.4
3,102,957	+		IAI47_14705	0.23	-0.1
3,102,957	+		IAI47_14705	0.23	+0.8
3,102,958	-		IAI47_14705	0.23	-0.5
3,103,004	+		IAI47_14705	0.26	+1.5
3,103,026	-		IAI47_14705	0.28	+1.8
3,103,026	-		IAI47_14705	0.28	+0.0
3,103,062	+		IAI47_14705	0.30	+1.8
3,103,098	+		IAI47_14705	0.33	+2.4
3,103,098	+		IAI47_14705	0.33	-0.6
3,103,098	+		IAI47_14705	0.33	+0.8
3,103,099	-		IAI47_14705	0.33	-1.2
3,103,188	+		IAI47_14705	0.40	-0.8
3,103,189	-		IAI47_14705	0.40	+0.3
3,103,268	+		IAI47_14705	0.46	+0.3
3,103,268	+		IAI47_14705	0.46	+0.0
3,103,268	+		IAI47_14705	0.46	-0.8
3,103,269	-		IAI47_14705	0.46	-1.0
3,103,269	-		IAI47_14705	0.46	-1.2
3,103,290	-		IAI47_14705	0.47	-1.0
3,103,299	+		IAI47_14705	0.48	+0.4
3,103,306	-		IAI47_14705	0.48	+1.8
3,103,413	+		IAI47_14705	0.56	-0.1
3,103,413	+		IAI47_14705	0.56	+0.8
3,103,446	+		IAI47_14705	0.59	+0.5
3,103,449	+		IAI47_14705	0.59	+1.2
3,103,449	+		IAI47_14705	0.59	-1.4
3,103,449	+		IAI47_14705	0.59	+0.4
3,103,473	+		IAI47_14705	0.61	-0.8
3,103,473	+		IAI47_14705	0.61	-0.2