Strain Fitness in Pantoea sp. MT58 around IAI47_14685

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,097,690	-				-1.6
3,097,718	+				-0.0
3,097,718	+				-1.2
3,097,728	+				-0.5
3,097,728	+				-0.2
3,097,754	-				-1.8
3,097,767	+				-0.6
3,097,767	+				+0.2
3,097,771	+				-0.5
3,097,777	-				-1.2
3,097,799	+				-0.6
3,097,814	+				-1.2
3,097,815	-				+1.2
3,097,844	+				-3.1
3,097,844	+				-2.8
3,097,845	-				+0.2
3,097,886	+		IAI47_14680	0.14	-0.8
3,097,987	+		IAI47_14680	0.25	-2.4
3,097,987	+		IAI47_14680	0.25	-0.2
3,097,987	+		IAI47_14680	0.25	+0.8
3,097,988	-		IAI47_14680	0.25	-1.2
3,097,995	+		IAI47_14680	0.26	-1.2
3,097,996	-		IAI47_14680	0.26	-1.6
3,098,010	+		IAI47_14680	0.27	-0.6
3,098,011	-		IAI47_14680	0.28	-0.6
3,098,055	+		IAI47_14680	0.32	-1.8
3,098,055	+		IAI47_14680	0.32	-0.8
3,098,056	-		IAI47_14680	0.32	-1.6
3,098,056	-		IAI47_14680	0.32	-0.8
3,098,179	+		IAI47_14680	0.46	-3.1
3,098,251	-		IAI47_14680	0.53	-2.6
3,098,251	-		IAI47_14680	0.53	-2.2
3,098,305	+		IAI47_14680	0.59	-1.8
3,098,306	-		IAI47_14680	0.59	-1.6
3,098,319	+		IAI47_14680	0.61	-0.6
3,098,371	-		IAI47_14680	0.66	-2.6
3,098,493	+		IAI47_14680	0.80	-0.2
3,098,493	+		IAI47_14680	0.80	-2.0
3,098,494	-		IAI47_14680	0.80	-1.9
3,098,494	-		IAI47_14680	0.80	-0.8
3,098,494	-		IAI47_14680	0.80	-2.0
3,098,494	-		IAI47_14680	0.80	+0.8
3,098,496	+		IAI47_14680	0.80	-1.2
3,098,496	+		IAI47_14680	0.80	-0.2
3,098,496	+		IAI47_14680	0.80	+1.0
3,098,496	+		IAI47_14680	0.80	+1.4
3,098,496	+		IAI47_14680	0.80	-0.2
3,098,497	-		IAI47_14680	0.80	+0.8
3,098,497	-		IAI47_14680	0.80	-0.2
3,098,548	+		IAI47_14680	0.85	-1.2
3,098,568	+		IAI47_14680	0.88	-0.2
3,098,569	-		IAI47_14680	0.88	-0.8
3,098,640	+				-2.2
3,098,640	+				-0.2
3,098,640	+				-0.2
3,098,680	+				-1.2
3,098,681	-				-1.8
3,098,681	-				-0.1
3,098,681	-				-0.2
3,098,683	+				-2.4
3,098,684	-				-1.2
3,098,684	-				-1.6
3,098,684	-				-0.2
3,098,684	-				-1.8
3,098,734	+				+0.8
3,098,755	+				-2.2
3,098,763	+				-1.8
3,098,791	+				-1.8
3,098,791	+				-1.2
3,098,791	+				-1.5
3,098,791	+				-2.8
3,098,792	-				-0.6
3,098,792	-				-2.6
3,098,814	-				+1.3
3,098,814	-				-0.2
3,098,860	+				-0.8
3,098,867	+				+0.2
3,098,867	+				-0.6
3,098,867	+				-0.8
3,098,867	+				-0.2
3,098,867	+				-1.2
3,098,867	+				-0.2
3,098,867	+				-0.8
3,098,867	+				-2.4
3,098,867	+				-1.8
3,098,867	+				-0.2
3,098,867	+				-0.2
3,098,867	+				-2.0
3,098,867	+				-1.2
3,098,867	+				-0.2
3,098,868	-				-0.8
3,098,868	-				-1.2
3,098,868	-				-1.6
3,098,868	-				+0.2
3,098,868	-				+0.8
3,098,917	+		IAI47_14685	0.12	-2.0
3,098,917	+		IAI47_14685	0.12	-1.0
3,098,918	-		IAI47_14685	0.12	-1.2
3,098,938	+		IAI47_14685	0.13	-2.7
3,098,939	-		IAI47_14685	0.13	-1.2
3,098,982	-		IAI47_14685	0.15	-0.6
3,098,995	+		IAI47_14685	0.16	-0.2
3,099,013	+		IAI47_14685	0.16	-1.2
3,099,013	+		IAI47_14685	0.16	-0.8
3,099,014	-		IAI47_14685	0.16	-0.2
3,099,014	-		IAI47_14685	0.16	-1.6
3,099,155	-		IAI47_14685	0.24	-2.8
3,099,204	-		IAI47_14685	0.26	-2.9
3,099,204	-		IAI47_14685	0.26	+0.4
3,099,227	+		IAI47_14685	0.27	+0.8
3,099,228	-		IAI47_14685	0.27	-1.2
3,099,228	-		IAI47_14685	0.27	-0.2
3,099,228	-		IAI47_14685	0.27	-0.6
3,099,280	+		IAI47_14685	0.30	-1.2
3,099,280	+		IAI47_14685	0.30	-3.1
3,099,281	-		IAI47_14685	0.30	-0.8
3,099,305	-		IAI47_14685	0.31	-0.5
3,099,458	+		IAI47_14685	0.39	-0.6
3,099,459	-		IAI47_14685	0.39	-2.6
3,099,509	+		IAI47_14685	0.41	+1.0
3,099,509	+		IAI47_14685	0.41	-0.8
3,099,509	+				-0.8
3,099,509	+		IAI47_14685	0.41	-0.4
3,099,509	+		IAI47_14685	0.41	-2.7
3,099,509	+		IAI47_14685	0.41	-2.0
3,099,509	+		IAI47_14685	0.41	-2.4
3,099,510	-		IAI47_14685	0.42	+0.4
3,099,510	-		IAI47_14685	0.42	+0.2
3,099,548	+		IAI47_14685	0.43	-2.2
3,099,548	+		IAI47_14685	0.43	-1.2
3,099,548	+		IAI47_14685	0.43	-0.8
3,099,548	+		IAI47_14685	0.43	-0.8
3,099,548	+		IAI47_14685	0.43	-2.7
3,099,548	+		IAI47_14685	0.43	-3.4
3,099,548	+		IAI47_14685	0.43	-1.0
3,099,548	+		IAI47_14685	0.43	-0.2
3,099,549	-		IAI47_14685	0.43	-2.0
3,099,549	-		IAI47_14685	0.43	-0.2
3,099,549	-		IAI47_14685	0.43	-1.2
3,099,558	+		IAI47_14685	0.44	-1.0
3,099,558	+		IAI47_14685	0.44	-2.3
3,099,558	+		IAI47_14685	0.44	-3.3
3,099,559	-		IAI47_14685	0.44	-1.2
3,099,624	-		IAI47_14685	0.47	-2.0
3,099,624	-		IAI47_14685	0.47	-1.8
3,099,625	+		IAI47_14685	0.47	-2.6
3,099,625	+		IAI47_14685	0.47	-2.2
3,099,625	+		IAI47_14685	0.47	-3.1
3,099,625	+		IAI47_14685	0.47	-0.6
3,099,626	-		IAI47_14685	0.47	-1.6
3,099,626	-		IAI47_14685	0.47	-2.2
3,099,626	-		IAI47_14685	0.47	-0.8
3,099,626	-		IAI47_14685	0.47	-1.4
3,099,626	-		IAI47_14685	0.47	-2.0
3,099,670	+		IAI47_14685	0.50	-0.8
3,099,670	+		IAI47_14685	0.50	-2.2
3,099,769	+		IAI47_14685	0.55	-0.2
3,099,797	+		IAI47_14685	0.56	-1.8
3,099,797	+		IAI47_14685	0.56	-1.3
3,099,798	-		IAI47_14685	0.56	-0.6
3,099,798	-		IAI47_14685	0.56	-0.2
3,099,798	-		IAI47_14685	0.56	-0.8
3,099,798	-		IAI47_14685	0.56	-0.8
3,099,798	-		IAI47_14685	0.56	-1.4
3,099,798	-		IAI47_14685	0.56	-1.6
3,099,798	-		IAI47_14685	0.56	-1.2
3,099,798	-		IAI47_14685	0.56	-0.8
3,099,798	-		IAI47_14685	0.56	-1.2
3,099,872	-		IAI47_14685	0.60	-3.6
3,099,882	+		IAI47_14685	0.60	-1.9
3,099,882	+		IAI47_14685	0.60	-1.6
3,099,910	+		IAI47_14685	0.62	-0.2
3,099,910	+		IAI47_14685	0.62	+0.2
3,099,911	-		IAI47_14685	0.62	-0.2
3,099,956	-		IAI47_14685	0.64	-1.6
3,099,956	-		IAI47_14685	0.64	-0.8
3,099,956	-		IAI47_14685	0.64	-0.2
3,099,983	-		IAI47_14685	0.65	+0.2
3,099,998	+		IAI47_14685	0.66	-1.8
3,099,998	+		IAI47_14685	0.66	-1.0
3,100,045	+		IAI47_14685	0.68	+0.8
3,100,091	-		IAI47_14685	0.71	-1.7
3,100,100	+		IAI47_14685	0.71	-1.6
3,100,100	+		IAI47_14685	0.71	-0.2
3,100,101	-		IAI47_14685	0.71	-0.2
3,100,101	-		IAI47_14685	0.71	-2.6
3,100,145	-		IAI47_14685	0.74	-0.2
3,100,211	-		IAI47_14685	0.77	-0.6
3,100,236	-		IAI47_14685	0.78	-1.2
3,100,245	+		IAI47_14685	0.79	-2.2
3,100,245	+		IAI47_14685	0.79	-0.8
3,100,297	+		IAI47_14685	0.81	-1.6
3,100,297	+		IAI47_14685	0.81	-0.2
3,100,297	+		IAI47_14685	0.81	-0.8
3,100,298	-		IAI47_14685	0.81	-0.2
3,100,298	-		IAI47_14685	0.81	+0.4
3,100,334	+		IAI47_14685	0.83	-1.8
3,100,334	+		IAI47_14685	0.83	-0.2
3,100,335	-		IAI47_14685	0.83	-1.8
3,100,335	-		IAI47_14685	0.83	-0.2
3,100,406	+		IAI47_14685	0.87	-1.2
3,100,424	+		IAI47_14685	0.88	-0.2
3,100,425	-		IAI47_14685	0.88	+0.8
3,100,425	-		IAI47_14685	0.88	-0.8
3,100,425	-		IAI47_14685	0.88	-1.8
3,100,438	+		IAI47_14685	0.88	+0.0
3,100,438	+		IAI47_14685	0.88	-2.6
3,100,438	+		IAI47_14685	0.88	-1.6
3,100,438	+		IAI47_14685	0.88	-2.4
3,100,438	+		IAI47_14685	0.88	-1.2
3,100,438	+		IAI47_14685	0.88	-0.2
3,100,438	+		IAI47_14685	0.88	+0.4
3,100,439	-		IAI47_14685	0.88	+0.8
3,100,439	-		IAI47_14685	0.88	-0.6
3,100,439	-		IAI47_14685	0.88	+0.0
3,100,439	-		IAI47_14685	0.88	-2.6
3,100,439	-		IAI47_14685	0.88	-0.2
3,100,484	-				+0.2
3,100,488	+				-1.8
3,100,489	-				-1.2
3,100,489	-				-2.6
3,100,513	+				+0.2
3,100,513	+				-0.8
3,100,513	+				-3.5
3,100,513	+				-0.2
3,100,513	+				-0.8
3,100,514	-				-0.8
3,100,514	-				-0.2
3,100,514	-				-1.6
3,100,555	+				+0.8
3,100,592	+				-0.1
3,100,592	+				-0.8
3,100,592	+				+0.8
3,100,592	+				-1.2
3,100,592	+				-1.2
3,100,593	-				-1.6
3,100,593	-				-1.6
3,100,593	-				-1.8
3,100,595	+				-0.8
3,100,595	+				-0.8
3,100,595	+				-0.2
3,100,596	-				-1.8
3,100,596	-				-1.6
3,100,596	-				-0.2
3,100,667	+				-0.2
3,100,740	+		IAI47_14690	0.12	-0.8
3,100,740	+		IAI47_14690	0.12	-0.6
3,100,741	-		IAI47_14690	0.12	-0.6
3,100,782	+		IAI47_14690	0.18	-2.7
3,100,783	-		IAI47_14690	0.19	-1.6
3,100,807	+		IAI47_14690	0.22	+0.8
3,100,807	+		IAI47_14690	0.22	-0.9
3,100,807	+		IAI47_14690	0.22	-3.2
3,100,807	+		IAI47_14690	0.22	-0.8
3,100,807	+		IAI47_14690	0.22	-2.2
3,100,807	+		IAI47_14690	0.22	+0.0
3,100,807	+		IAI47_14690	0.22	-1.2
3,100,807	+		IAI47_14690	0.22	-1.6
3,100,808	-		IAI47_14690	0.23	+0.8
3,100,808	-		IAI47_14690	0.23	-0.2
3,100,808	-		IAI47_14690	0.23	-1.8
3,100,808	-		IAI47_14690	0.23	-2.4
3,100,808	-		IAI47_14690	0.23	-2.6
3,100,848	+		IAI47_14690	0.29	+0.8
3,100,848	+		IAI47_14690	0.29	-0.2
3,100,849	-		IAI47_14690	0.29	-1.8
3,100,854	+		IAI47_14690	0.30	-0.2
3,100,854	+		IAI47_14690	0.30	+2.4
3,100,854	+		IAI47_14690	0.30	-2.4
3,100,854	+		IAI47_14690	0.30	-2.8
3,100,855	-		IAI47_14690	0.30	-0.6
3,100,915	+		IAI47_14690	0.40	-1.6
3,100,915	+		IAI47_14690	0.40	-0.6
3,100,929	+		IAI47_14690	0.42	-1.2
3,100,929	+		IAI47_14690	0.42	-0.8
3,100,930	-		IAI47_14690	0.42	-0.2
3,100,930	-		IAI47_14690	0.42	-1.9
3,100,930	-		IAI47_14690	0.42	-2.0
3,100,930	-		IAI47_14690	0.42	-0.2
3,101,148	-		IAI47_14690	0.78	-0.2
3,101,148	-		IAI47_14690	0.78	-0.2
3,101,163	+		IAI47_14690	0.80	-0.8
3,101,163	+		IAI47_14690	0.80	-1.2
3,101,164	-		IAI47_14690	0.80	-0.9
3,101,164	-		IAI47_14690	0.80	-1.2
3,101,264	-				-1.8
3,101,281	+				-0.6
3,101,281	+				-1.2
3,101,281	+				-0.2
3,101,281	+				-1.2
3,101,281	+				-0.2
3,101,281	+				-2.2
3,101,282	-				-0.8
3,101,282	-				-2.0
3,101,282	-				-0.8
3,101,282	-				-3.0
3,101,282	-				-0.8
3,101,282	-				-1.6
3,101,282	-				-2.2
3,101,321	+		IAI47_14695	0.12	-2.0
3,101,322	-		IAI47_14695	0.12	+0.0
3,101,334	+		IAI47_14695	0.15	-1.8
3,101,334	+		IAI47_14695	0.15	-0.8
3,101,334	+		IAI47_14695	0.15	-0.2
3,101,335	-		IAI47_14695	0.16	-1.6
3,101,335	-		IAI47_14695	0.16	-1.2
3,101,357	+		IAI47_14695	0.22	-0.2
3,101,357	+		IAI47_14695	0.22	-0.8
3,101,358	-		IAI47_14695	0.23	-1.2
3,101,358	-		IAI47_14695	0.23	-2.4
3,101,358	-		IAI47_14695	0.23	+0.1
3,101,389	+		IAI47_14695	0.32	-2.0
3,101,389	+		IAI47_14695	0.32	-2.9
3,101,417	+		IAI47_14695	0.41	-1.2
3,101,417	+		IAI47_14695	0.41	+0.8
3,101,417	+		IAI47_14695	0.41	-2.4
3,101,417	+		IAI47_14695	0.41	+0.2
3,101,418	-		IAI47_14695	0.41	-0.8
3,101,418	-		IAI47_14695	0.41	-1.6
3,101,485	+		IAI47_14695	0.61	+0.8
3,101,485	+		IAI47_14695	0.61	-1.0
3,101,485	+		IAI47_14695	0.61	-0.8
3,101,486	-		IAI47_14695	0.62	-0.8
3,101,486	-		IAI47_14695	0.62	-0.2
3,101,518	+		IAI47_14695	0.71	-1.5
3,101,557	+		IAI47_14695	0.83	-0.8
3,101,592	+				-0.9
3,101,592	+				+0.4
3,101,593	-				-0.8
3,101,611	-				-2.0
3,101,611	-				-1.0
3,101,611	-				-0.2
3,101,631	+				+0.4
3,101,638	+				-1.1
3,101,639	-				-1.1
3,101,664	+				-0.2