Strain Fitness in Pantoea sp. MT58 around IAI47_12275

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
2,591,641	+		IAI47_12260	0.65	+0.1
2,591,652	+		IAI47_12260	0.69	-0.9
2,591,652	+		IAI47_12260	0.69	+0.3
2,591,670	-		IAI47_12260	0.76	+0.3
2,591,757	+				-1.3
2,591,758	-				-0.9
2,591,758	-				+0.1
2,591,840	+				-0.6
2,591,875	+				-0.1
2,591,875	+				-0.3
2,591,875	+				-0.6
2,591,875	+				+0.1
2,591,875	+				-0.5
2,591,876	-				+0.2
2,591,876	-				-0.7
2,591,876	-				-0.7
2,591,876	-				+0.4
2,591,876	-				+1.3
2,591,876	-				+0.2
2,591,876	-				+0.4
2,591,876	-				+0.2
2,591,876	-				-0.5
2,591,876	-				+0.4
2,591,880	+				-0.1
2,591,880	+				+0.1
2,591,880	+				-0.1
2,591,880	+				+0.9
2,591,881	-				-0.6
2,591,881	-				+0.7
2,591,881	-				-1.1
2,591,881	-				+0.4
2,591,885	+				+0.2
2,591,886	-				+1.9
2,591,917	+		IAI47_12265	0.13	-0.5
2,591,917	+		IAI47_12265	0.13	-1.3
2,591,918	-		IAI47_12265	0.13	+0.9
2,591,983	+		IAI47_12265	0.29	-1.2
2,591,984	-		IAI47_12265	0.29	+0.2
2,591,984	-		IAI47_12265	0.29	+0.3
2,591,984	-		IAI47_12265	0.29	-0.3
2,591,984	-		IAI47_12265	0.29	+0.2
2,591,984	-		IAI47_12265	0.29	+0.2
2,592,003	+		IAI47_12265	0.34	-0.3
2,592,004	-		IAI47_12265	0.34	-0.4
2,592,004	-		IAI47_12265	0.34	+0.3
2,592,006	+		IAI47_12265	0.35	+1.0
2,592,006	+		IAI47_12265	0.35	-0.3
2,592,006	+		IAI47_12265	0.35	-0.1
2,592,006	+		IAI47_12265	0.35	-1.1
2,592,006	+		IAI47_12265	0.35	-0.3
2,592,006	+		IAI47_12265	0.35	+0.1
2,592,006	+		IAI47_12265	0.35	+0.2
2,592,007	-		IAI47_12265	0.35	+0.8
2,592,007	-		IAI47_12265	0.35	-1.2
2,592,007	-		IAI47_12265	0.35	+2.3
2,592,007	-		IAI47_12265	0.35	-0.3
2,592,007	-		IAI47_12265	0.35	+0.4
2,592,007	-		IAI47_12265	0.35	-0.5
2,592,007	-		IAI47_12265	0.35	+0.3
2,592,007	-		IAI47_12265	0.35	+0.9
2,592,007	-		IAI47_12265	0.35	-1.4
2,592,144	+		IAI47_12265	0.69	+0.4
2,592,237	+				-0.3
2,592,238	-				-1.7
2,592,259	+				-0.3
2,592,259	+				-0.3
2,592,260	-				-0.6
2,592,260	-				-0.5
2,592,265	+				-0.3
2,592,265	+				+1.4
2,592,265	+				+0.2
2,592,265	+				+0.1
2,592,266	-				-0.3
2,592,266	-				-0.6
2,592,340	-		IAI47_12270	0.34	-0.8
2,592,340	-		IAI47_12270	0.34	-0.1
2,592,340	-		IAI47_12270	0.34	+0.6
2,592,363	+		IAI47_12270	0.44	+0.6
2,592,363	+		IAI47_12270	0.44	-0.5
2,592,364	-		IAI47_12270	0.44	-1.4
2,592,364	-		IAI47_12270	0.44	+0.1
2,592,364	-		IAI47_12270	0.44	+0.9
2,592,364	-		IAI47_12270	0.44	+1.0
2,592,375	+		IAI47_12270	0.49	+0.2
2,592,375	+		IAI47_12270	0.49	+1.3
2,592,388	+		IAI47_12270	0.54	+0.2
2,592,388	+		IAI47_12270	0.54	-1.3
2,592,389	-		IAI47_12270	0.55	+0.2
2,592,389	-		IAI47_12270	0.55	+1.2
2,592,389	-		IAI47_12270	0.55	+1.2
2,592,389	-		IAI47_12270	0.55	-0.5
2,592,431	+		IAI47_12270	0.72	-1.3
2,592,432	-		IAI47_12270	0.72	+1.9
2,592,447	+		IAI47_12270	0.79	+0.5
2,592,448	-		IAI47_12270	0.79	+0.4
2,592,465	+		IAI47_12270	0.86	-0.5
2,592,466	-		IAI47_12270	0.87	+0.2
2,592,466	-		IAI47_12270	0.87	+0.7
2,592,466	-		IAI47_12270	0.87	-1.9
2,592,466	-		IAI47_12270	0.87	-0.3
2,592,466	-		IAI47_12270	0.87	+0.7
2,592,569	-				+0.4
2,592,576	+				-0.2
2,592,587	+				+0.3
2,592,587	+				-0.3
2,592,588	-				+0.2
2,592,588	-				+0.1
2,592,595	+				-0.9
2,592,650	+				+0.1
2,592,663	-				-0.5
2,592,694	+				+0.5
2,592,694	+				-0.9
2,592,694	+				+1.0
2,592,694	+				+2.1
2,592,694	+				-0.5
2,592,694	+				+1.5
2,592,694	+				+0.4
2,592,695	-				+2.0
2,592,695	-				-1.6
2,592,695	-				+0.1
2,592,698	+				-0.4
2,592,699	-				-0.7
2,592,699	-				+0.2
2,592,699	-				-0.7
2,592,738	+				+0.5
2,592,739	-				+0.1
2,592,756	+				+0.2
2,592,756	+				-0.0
2,592,757	-				+1.7
2,592,785	+				+0.8
2,592,832	+				-0.2
2,592,833	-				+0.1
2,592,833	-				+0.7
2,592,833	-				+0.4
2,592,833	-				+1.5
2,592,833	-				+0.3
2,592,833	-				+0.1
2,592,833	-				+0.1
2,592,854	+				-0.1
2,592,854	+				+0.9
2,592,917	+		IAI47_12275	0.11	-0.5
2,592,917	+		IAI47_12275	0.11	-0.0
2,592,918	-		IAI47_12275	0.11	-0.3
2,592,918	-		IAI47_12275	0.11	+0.4
2,592,918	-		IAI47_12275	0.11	+0.1
2,592,958	+		IAI47_12275	0.13	+0.3
2,592,958	+		IAI47_12275	0.13	+0.9
2,592,958	+		IAI47_12275	0.13	+0.1
2,592,958	+		IAI47_12275	0.13	-0.3
2,592,959	-		IAI47_12275	0.13	+0.7
2,592,959	-		IAI47_12275	0.13	+0.1
2,592,959	-		IAI47_12275	0.13	-0.4
2,592,995	-		IAI47_12275	0.14	+0.1
2,592,995	-		IAI47_12275	0.14	+0.5
2,593,034	+		IAI47_12275	0.16	-1.1
2,593,034	+		IAI47_12275	0.16	+1.1
2,593,035	-		IAI47_12275	0.16	+0.5
2,593,035	-		IAI47_12275	0.16	+0.1
2,593,035	-		IAI47_12275	0.16	+0.1
2,593,124	+		IAI47_12275	0.19	+0.8
2,593,124	+		IAI47_12275	0.19	+2.2
2,593,125	-		IAI47_12275	0.20	-1.3
2,593,190	+		IAI47_12275	0.22	+0.1
2,593,191	-		IAI47_12275	0.22	-1.6
2,593,284	-		IAI47_12275	0.26	+0.1
2,593,295	+		IAI47_12275	0.26	+1.0
2,593,295	+		IAI47_12275	0.26	-0.0
2,593,295	+		IAI47_12275	0.26	+0.1
2,593,295	+		IAI47_12275	0.26	+0.7
2,593,296	-		IAI47_12275	0.26	-0.6
2,593,296	-		IAI47_12275	0.26	+0.4
2,593,296	-		IAI47_12275	0.26	+0.6
2,593,296	-		IAI47_12275	0.26	+1.0
2,593,296	-		IAI47_12275	0.26	+1.6
2,593,296	-		IAI47_12275	0.26	+0.3
2,593,296	-		IAI47_12275	0.26	-0.3
2,593,296	-		IAI47_12275	0.26	+0.2
2,593,300	-		IAI47_12275	0.26	+0.9
2,593,369	+		IAI47_12275	0.29	+0.4
2,593,370	-		IAI47_12275	0.29	+0.2
2,593,516	+		IAI47_12275	0.35	+2.1
2,593,516	+		IAI47_12275	0.35	+0.1
2,593,517	-		IAI47_12275	0.35	+0.9
2,593,517	-		IAI47_12275	0.35	+0.5
2,593,535	+		IAI47_12275	0.36	+1.0
2,593,536	-		IAI47_12275	0.36	+0.5
2,593,536	-		IAI47_12275	0.36	-0.4
2,593,536	-		IAI47_12275	0.36	+0.8
2,593,574	+		IAI47_12275	0.37	-1.1
2,593,574	+		IAI47_12275	0.37	-0.2
2,593,575	-		IAI47_12275	0.37	-1.3
2,593,575	-		IAI47_12275	0.37	-0.4
2,593,575	-		IAI47_12275	0.37	+0.6
2,593,575	-		IAI47_12275	0.37	+3.3
2,593,597	+		IAI47_12275	0.38	-0.4
2,593,597	+		IAI47_12275	0.38	-0.0
2,593,597	+		IAI47_12275	0.38	+0.9
2,593,597	+		IAI47_12275	0.38	+0.8
2,593,598	-		IAI47_12275	0.38	+1.2
2,593,598	-		IAI47_12275	0.38	-0.2
2,593,604	+		IAI47_12275	0.38	-0.3
2,593,604	+		IAI47_12275	0.38	-0.9
2,593,604	+		IAI47_12275	0.38	+2.1
2,593,604	+		IAI47_12275	0.38	-0.3
2,593,605	-		IAI47_12275	0.38	-0.4
2,593,605	-		IAI47_12275	0.38	+2.0
2,593,605	-		IAI47_12275	0.38	+0.4
2,593,651	-		IAI47_12275	0.40	+0.9
2,593,741	+		IAI47_12275	0.44	+1.7
2,593,741	+		IAI47_12275	0.44	-0.1
2,593,742	-		IAI47_12275	0.44	+0.1
2,593,742	-		IAI47_12275	0.44	+0.5
2,593,742	-		IAI47_12275	0.44	-0.1
2,593,759	+		IAI47_12275	0.44	+0.7
2,593,760	-		IAI47_12275	0.44	+1.2
2,593,760	-		IAI47_12275	0.44	-0.6
2,593,760	-		IAI47_12275	0.44	+1.4
2,593,760	-		IAI47_12275	0.44	+0.4
2,593,881	-		IAI47_12275	0.49	-0.0
2,593,881	-		IAI47_12275	0.49	-0.7
2,593,891	-		IAI47_12275	0.50	+0.3
2,593,899	-		IAI47_12275	0.50	+3.1
2,593,901	+		IAI47_12275	0.50	+1.2
2,593,901	+		IAI47_12275	0.50	-0.0
2,593,902	-		IAI47_12275	0.50	-0.2
2,593,902	-		IAI47_12275	0.50	+1.3
2,593,902	-		IAI47_12275	0.50	-0.1
2,593,958	+		IAI47_12275	0.52	-0.8
2,593,972	+		IAI47_12275	0.53	-0.1
2,593,973	-		IAI47_12275	0.53	+1.1
2,593,973	-		IAI47_12275	0.53	+1.0
2,593,974	+		IAI47_12275	0.53	-0.3
2,593,974	+		IAI47_12275	0.53	+0.5
2,593,975	-		IAI47_12275	0.53	+1.0
2,593,975	-		IAI47_12275	0.53	+0.3
2,593,975	-		IAI47_12275	0.53	+0.3
2,594,006	-		IAI47_12275	0.54	+0.4
2,594,006	-		IAI47_12275	0.54	-0.0
2,594,006	-		IAI47_12275	0.54	-0.9
2,594,006	-		IAI47_12275	0.54	+1.4
2,594,012	+		IAI47_12275	0.54	-0.3
2,594,012	+		IAI47_12275	0.54	-0.3
2,594,013	-		IAI47_12275	0.54	-1.5
2,594,018	+		IAI47_12275	0.54	+0.4
2,594,018	+		IAI47_12275	0.54	+0.3
2,594,063	+		IAI47_12275	0.56	+1.0
2,594,108	+		IAI47_12275	0.58	-0.3
2,594,109	-		IAI47_12275	0.58	+0.3
2,594,109	-		IAI47_12275	0.58	-0.7
2,594,137	+		IAI47_12275	0.59	-0.1
2,594,137	+		IAI47_12275	0.59	+0.1
2,594,137	+		IAI47_12275	0.59	-0.8
2,594,137	+		IAI47_12275	0.59	+0.4
2,594,137	+		IAI47_12275	0.59	+0.1
2,594,137	+		IAI47_12275	0.59	+1.0
2,594,137	+		IAI47_12275	0.59	-0.3
2,594,138	-		IAI47_12275	0.59	+0.9
2,594,138	-		IAI47_12275	0.59	+1.2
2,594,138	-		IAI47_12275	0.59	-1.1
2,594,138	-		IAI47_12275	0.59	+0.6
2,594,138	-		IAI47_12275	0.59	-0.3
2,594,138	-		IAI47_12275	0.59	+0.3
2,594,138	-		IAI47_12275	0.59	-0.6
2,594,141	+		IAI47_12275	0.59	+0.7
2,594,141	+		IAI47_12275	0.59	+1.7
2,594,141	+		IAI47_12275	0.59	-0.9
2,594,142	-		IAI47_12275	0.59	+0.1
2,594,142	-		IAI47_12275	0.59	-0.3
2,594,142	-		IAI47_12275	0.59	-1.3
2,594,142	-		IAI47_12275	0.59	-0.2
2,594,143	+		IAI47_12275	0.59	+1.2
2,594,143	+		IAI47_12275	0.59	+0.8
2,594,143	+		IAI47_12275	0.59	-0.1
2,594,143	+		IAI47_12275	0.59	+0.8
2,594,143	+		IAI47_12275	0.59	-0.0
2,594,143	+		IAI47_12275	0.59	-0.2
2,594,143	+		IAI47_12275	0.59	-0.3
2,594,143	+		IAI47_12275	0.59	+1.3
2,594,143	+		IAI47_12275	0.59	+2.0
2,594,144	-		IAI47_12275	0.59	+0.2
2,594,144	-		IAI47_12275	0.59	-1.3
2,594,144	-		IAI47_12275	0.59	+0.1
2,594,144	-		IAI47_12275	0.59	-0.3
2,594,144	-		IAI47_12275	0.59	-0.3
2,594,144	-		IAI47_12275	0.59	-1.8
2,594,189	+		IAI47_12275	0.61	-0.6
2,594,189	+		IAI47_12275	0.61	-0.1
2,594,190	-		IAI47_12275	0.61	-0.3
2,594,299	+		IAI47_12275	0.65	+0.9
2,594,299	+		IAI47_12275	0.65	-0.2
2,594,299	+		IAI47_12275	0.65	-0.1
2,594,299	+		IAI47_12275	0.65	+0.2
2,594,299	+		IAI47_12275	0.65	+1.4
2,594,300	-		IAI47_12275	0.66	-0.1
2,594,300	-		IAI47_12275	0.66	+0.0
2,594,300	-		IAI47_12275	0.66	+0.8
2,594,300	-		IAI47_12275	0.66	-0.6
2,594,317	+		IAI47_12275	0.66	+0.7
2,594,317	+		IAI47_12275	0.66	-0.7
2,594,383	+		IAI47_12275	0.69	+0.4
2,594,405	+		IAI47_12275	0.70	-1.3
2,594,406	-		IAI47_12275	0.70	-0.8
2,594,406	-		IAI47_12275	0.70	+0.2
2,594,406	-		IAI47_12275	0.70	-0.3
2,594,417	+		IAI47_12275	0.70	+0.7
2,594,417	+		IAI47_12275	0.70	+1.0
2,594,418	-		IAI47_12275	0.70	-0.0
2,594,418	-		IAI47_12275	0.70	-0.2
2,594,429	+		IAI47_12275	0.71	+1.0
2,594,429	+		IAI47_12275	0.71	+0.0
2,594,429	+		IAI47_12275	0.71	-1.6
2,594,430	-		IAI47_12275	0.71	+0.3
2,594,430	-		IAI47_12275	0.71	-0.5
2,594,430	-		IAI47_12275	0.71	-0.2
2,594,430	-		IAI47_12275	0.71	+1.1
2,594,470	+		IAI47_12275	0.72	+2.0
2,594,471	-		IAI47_12275	0.72	+0.1
2,594,471	-		IAI47_12275	0.72	+0.1
2,594,477	+		IAI47_12275	0.72	+0.2
2,594,477	+		IAI47_12275	0.72	+1.1
2,594,478	-		IAI47_12275	0.73	+0.7
2,594,478	-		IAI47_12275	0.73	-0.8
2,594,478	-		IAI47_12275	0.73	-0.8
2,594,478	-		IAI47_12275	0.73	+0.1
2,594,478	-		IAI47_12275	0.73	+1.3
2,594,482	+		IAI47_12275	0.73	-0.3
2,594,482	+		IAI47_12275	0.73	+0.3
2,594,482	+		IAI47_12275	0.73	-1.1
2,594,483	-		IAI47_12275	0.73	-0.1
2,594,483	-		IAI47_12275	0.73	+2.7
2,594,483	-		IAI47_12275	0.73	-0.3
2,594,483	-		IAI47_12275	0.73	+0.3
2,594,560	-		IAI47_12275	0.76	-0.3
2,594,560	-		IAI47_12275	0.76	+4.3
2,594,592	+		IAI47_12275	0.77	+0.5
2,594,592	+		IAI47_12275	0.77	-0.2
2,594,593	-		IAI47_12275	0.77	+0.7
2,594,593	-		IAI47_12275	0.77	+0.7
2,594,593	-		IAI47_12275	0.77	+0.4
2,594,593	-		IAI47_12275	0.77	-0.1
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