Strain Fitness in Pantoea sp. MT58 around IAI47_07055

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
1,489,836	+				+0.2
1,489,836	+				-0.6
1,489,837	-				+0.1
1,489,844	+				+1.0
1,489,844	+				-0.2
1,489,844	+				+0.4
1,489,845	-				-0.1
1,489,845	-				+1.0
1,489,845	-				-0.3
1,489,845	-				-0.3
1,489,845	-				-1.1
1,489,854	+				+2.5
1,489,854	+				-0.8
1,489,854	+				+0.1
1,489,855	-				+0.3
1,489,855	-				-1.6
1,489,893	+				+0.0
1,489,898	+				-1.1
1,489,898	+				-2.6
1,489,898	+				-0.5
1,489,898	+				+0.9
1,489,898	+				-0.2
1,489,898	+				+0.1
1,489,899	-				-0.8
1,489,899	-				+0.4
1,489,899	-				-0.3
1,489,899	-				-0.3
1,489,899	-				+0.7
1,489,899	-				-0.2
1,489,899	-				-1.9
1,489,899	-				-1.1
1,489,899	-				-0.2
1,489,900	+				-1.6
1,489,900	+				+1.0
1,489,901	-				-0.5
1,489,944	+				-1.9
1,489,945	-				+0.4
1,489,945	-				-0.2
1,489,954	+				-0.6
1,489,955	-				+0.8
1,489,960	+				+0.7
1,489,961	-				+1.2
1,489,961	-				+0.4
1,489,961	-				+0.6
1,489,974	+				+0.1
1,489,975	-				+1.7
1,490,107	+		IAI47_07050	0.21	+0.0
1,490,186	+		IAI47_07050	0.31	-0.3
1,490,186	+		IAI47_07050	0.31	+2.7
1,490,187	-		IAI47_07050	0.31	-0.3
1,490,241	+		IAI47_07050	0.38	-0.1
1,490,241	+		IAI47_07050	0.38	+1.2
1,490,242	-		IAI47_07050	0.38	+0.0
1,490,242	-		IAI47_07050	0.38	+1.0
1,490,286	+		IAI47_07050	0.43	-1.9
1,490,354	+		IAI47_07050	0.52	+1.1
1,490,354	+		IAI47_07050	0.52	-0.3
1,490,355	-		IAI47_07050	0.52	+0.1
1,490,355	-		IAI47_07050	0.52	+0.4
1,490,378	+		IAI47_07050	0.55	+1.7
1,490,379	-		IAI47_07050	0.55	-0.3
1,490,379	-		IAI47_07050	0.55	-1.2
1,490,397	+		IAI47_07050	0.57	-0.9
1,490,397	+		IAI47_07050	0.57	-1.3
1,490,398	-		IAI47_07050	0.57	-1.5
1,490,398	-		IAI47_07050	0.57	-0.1
1,490,426	-		IAI47_07050	0.61	-0.2
1,490,473	+		IAI47_07050	0.67	+1.5
1,490,474	-		IAI47_07050	0.67	+0.9
1,490,546	-		IAI47_07050	0.76	+0.1
1,490,546	-		IAI47_07050	0.76	+1.1
1,490,568	-		IAI47_07050	0.79	-0.8
1,490,569	+		IAI47_07050	0.79	+0.7
1,490,570	-		IAI47_07050	0.79	-0.1
1,490,619	+		IAI47_07050	0.85	-0.7
1,490,620	-		IAI47_07050	0.85	+0.9
1,490,620	-		IAI47_07050	0.85	+0.5
1,490,746	+				+0.7
1,490,746	+				-0.1
1,490,746	+				+1.0
1,490,747	-				+0.2
1,490,767	+				+0.3
1,490,767	+				-0.5
1,490,768	-				-0.3
1,490,768	-				+0.3
1,490,768	-				+1.5
1,490,768	-				+0.4
1,490,776	+				+0.2
1,490,802	+				+0.1
1,490,802	+				+1.9
1,490,803	-				+0.2
1,490,803	-				-0.9
1,490,803	-				-0.8
1,490,810	+				-1.3
1,490,811	-				+0.4
1,490,971	+				-1.9
1,490,972	-		IAI47_07055	0.36	-0.3
1,490,982	-		IAI47_07055	0.38	-0.6
1,490,998	+		IAI47_07055	0.41	-0.8
1,491,058	+		IAI47_07055	0.54	-0.0
1,491,059	-		IAI47_07055	0.54	-0.1
1,491,059	-		IAI47_07055	0.54	-0.4
1,491,059	-		IAI47_07055	0.54	-1.3
1,491,125	+		IAI47_07055	0.68	-0.6
1,491,126	-		IAI47_07055	0.68	-0.7
1,491,126	-		IAI47_07055	0.68	-0.4
1,491,126	-		IAI47_07055	0.68	-0.9
1,491,226	-		IAI47_07055	0.89	-0.9
1,491,307	+				+0.2
1,491,307	+				-0.0
1,491,307	+				-0.0
1,491,308	-				-0.1
1,491,308	-				-0.4
1,491,308	-				-0.1
1,491,380	+				+0.1
1,491,380	+				-0.5
1,491,380	+				-0.6
1,491,381	-				-0.5
1,491,381	-				-0.3
1,491,381	-				-0.9
1,491,381	-				+0.2
1,491,381	-				-0.8
1,491,381	-				-1.2
1,491,381	-				-1.2
1,491,382	+				+0.3
1,491,382	+				+0.7
1,491,382	+				-0.3
1,491,383	-				-0.3
1,491,383	-				+0.8
1,491,383	-				+0.4
1,491,383	-				+0.4
1,491,383	-				+0.1
1,491,383	-				-0.1
1,491,383	-				+0.1
1,491,383	-				-2.0
1,491,383	-				-0.1
1,491,383	-				+0.7
1,491,383	-				-0.2
1,491,393	+				+0.2
1,491,394	-				-0.3
1,491,394	-				+1.5
1,491,394	-				-0.8
1,491,394	-				-0.7
1,491,394	-				+0.4
1,491,394	-				+0.4
1,491,394	-				+0.0
1,491,397	+				+0.7
1,491,418	+				+0.1
1,491,452	+				-1.3
1,491,452	+				-1.9
1,491,471	+		IAI47_07060	0.13	-2.6
1,491,471	+		IAI47_07060	0.13	-2.8
1,491,471	+		IAI47_07060	0.13	-4.5
1,491,472	-		IAI47_07060	0.13	-1.6
1,491,472	-		IAI47_07060	0.13	-3.7
1,491,472	-		IAI47_07060	0.13	-2.5
1,491,472	-		IAI47_07060	0.13	-2.5
1,491,472	-		IAI47_07060	0.13	-2.1
1,491,472	-		IAI47_07060	0.13	-0.9
1,491,588	+		IAI47_07060	0.32	-2.5
1,491,604	-		IAI47_07060	0.35	-3.5
1,491,604	-		IAI47_07060	0.35	-1.6
1,491,657	+		IAI47_07060	0.43	-2.1
1,491,657	+		IAI47_07060	0.43	-3.8
1,491,657	+		IAI47_07060	0.43	-3.6
1,491,657	+		IAI47_07060	0.43	-2.1
1,491,658	-		IAI47_07060	0.43	-3.4
1,491,658	-		IAI47_07060	0.43	-3.3
1,491,772	+		IAI47_07060	0.62	-3.2
1,491,772	+		IAI47_07060	0.62	-5.3
1,491,772	+		IAI47_07060	0.62	-2.9
1,491,773	-		IAI47_07060	0.62	-2.8
1,491,773	-		IAI47_07060	0.62	-4.2
1,491,779	+		IAI47_07060	0.63	-2.1
1,491,779	+		IAI47_07060	0.63	-2.3
1,491,779	+		IAI47_07060	0.63	-2.3
1,491,780	-		IAI47_07060	0.63	-3.4
1,491,780	-		IAI47_07060	0.63	-2.8
1,491,856	+		IAI47_07060	0.76	-1.9
1,491,856	+		IAI47_07060	0.76	-2.3
1,491,856	+		IAI47_07060	0.76	-2.6
1,491,856	+		IAI47_07060	0.76	-2.1
1,491,856	+		IAI47_07060	0.76	-2.5
1,491,856	+		IAI47_07060	0.76	-2.8
1,491,856	+		IAI47_07060	0.76	-1.3
1,491,857	-		IAI47_07060	0.76	-2.8
1,491,857	-		IAI47_07060	0.76	-3.2
1,491,857	-		IAI47_07060	0.76	-3.6
1,491,857	-		IAI47_07060	0.76	-0.3
1,491,857	-		IAI47_07060	0.76	-3.6
1,491,857	-		IAI47_07060	0.76	-1.6
1,491,857	-		IAI47_07060	0.76	-4.0
1,491,897	+		IAI47_07060	0.83	-3.9
1,491,897	+		IAI47_07060	0.83	-3.0
1,491,897	+		IAI47_07060	0.83	-3.8
1,491,898	-		IAI47_07060	0.83	-1.6
1,491,898	-		IAI47_07060	0.83	-2.3
1,491,898	-		IAI47_07060	0.83	-3.3
1,491,898	-		IAI47_07060	0.83	-0.9
1,491,928	+		IAI47_07060	0.88	-2.1
1,491,928	+		IAI47_07060	0.88	-1.3
1,491,929	-		IAI47_07060	0.88	-4.4
1,492,053	+				-5.1
1,492,053	+				-3.8
1,492,054	-				-2.1
1,492,056	+				-0.9
1,492,056	+				-4.6
1,492,056	+				-0.3
1,492,056	+				-4.2
1,492,057	-				-0.3
1,492,057	-				-0.9
1,492,057	-				-0.9
1,492,059	+				-3.2
1,492,060	-				-1.6
1,492,060	-				-3.2
1,492,060	-				-2.9
1,492,060	-				-0.9
1,492,068	+				-3.8
1,492,069	-				-3.2
1,492,075	+		IAI47_07065	0.10	-1.6
1,492,075	+		IAI47_07065	0.10	-3.6
1,492,075	+		IAI47_07065	0.10	-2.1
1,492,211	+		IAI47_07065	0.28	-3.5
1,492,211	+		IAI47_07065	0.28	-1.6
1,492,212	-		IAI47_07065	0.28	-4.5
1,492,218	+		IAI47_07065	0.28	-3.6