Strain Fitness in Pantoea sp. MT58 around IAI47_05380

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
1,138,387	+				+0.1
1,138,387	+				+0.4
1,138,387	+				-1.0
1,138,388	-				+0.3
1,138,405	+				+0.3
1,138,405	+				-1.4
1,138,406	-				+0.3
1,138,406	-				-0.9
1,138,406	-				+0.7
1,138,415	+				-0.5
1,138,415	+				-0.6
1,138,416	-				-0.9
1,138,416	-				-1.0
1,138,472	+		IAI47_05370	0.12	-0.5
1,138,473	-		IAI47_05370	0.12	-0.3
1,138,473	-		IAI47_05370	0.12	-0.9
1,138,606	+		IAI47_05370	0.43	+0.9
1,138,607	-		IAI47_05370	0.43	-1.1
1,138,630	+		IAI47_05370	0.49	-1.1
1,138,630	+		IAI47_05370	0.49	-0.5
1,138,631	-		IAI47_05370	0.49	+2.3
1,138,631	-		IAI47_05370	0.49	+0.3
1,138,633	+		IAI47_05370	0.49	-0.5
1,138,633	+		IAI47_05370	0.49	-0.2
1,138,633	+		IAI47_05370	0.49	-0.6
1,138,633	+		IAI47_05370	0.49	-0.3
1,138,654	+		IAI47_05370	0.54	-2.1
1,138,654	+		IAI47_05370	0.54	-0.0
1,138,654	+		IAI47_05370	0.54	-0.3
1,138,775	-		IAI47_05370	0.83	+0.7
1,138,789	+		IAI47_05370	0.86	+0.1
1,138,818	+				-0.6
1,138,818	+				-0.3
1,138,843	+				-1.1
1,138,843	+				-1.3
1,138,844	-				+0.4
1,138,844	-				+0.2
1,138,846	+				+0.7
1,138,846	+				-0.2
1,138,846	+				-0.7
1,138,847	-				-0.7
1,138,847	-				-0.1
1,138,847	-				-0.1
1,138,847	-				+1.6
1,138,877	+				+0.1
1,138,878	-				+0.4
1,138,878	-				-0.1
1,138,878	-				-0.8
1,138,896	+		IAI47_05375	0.12	-1.2
1,138,896	+		IAI47_05375	0.12	+0.4
1,138,896	+		IAI47_05375	0.12	-1.7
1,138,897	-		IAI47_05375	0.13	+0.7
1,138,897	-		IAI47_05375	0.13	-0.2
1,138,897	-		IAI47_05375	0.13	-0.9
1,139,010	-		IAI47_05375	0.37	+0.0
1,139,052	+		IAI47_05375	0.46	+0.0
1,139,128	-		IAI47_05375	0.62	-1.2
1,139,128	-		IAI47_05375	0.62	-1.8
1,139,128	-		IAI47_05375	0.62	+0.9
1,139,128	-		IAI47_05375	0.62	-1.1
1,139,257	+		IAI47_05375	0.90	+0.7
1,139,258	-		IAI47_05375	0.90	+0.7
1,139,354	+				+0.7
1,139,354	+				+0.5
1,139,354	+				-0.1
1,139,354	+				+0.8
1,139,354	+				+1.3
1,139,355	-				+0.7
1,139,355	-				+0.4
1,139,355	-				-0.0
1,139,355	-				+2.5
1,139,355	-				+0.7
1,139,355	-				+1.5
1,139,358	+				+0.1
1,139,359	-				-1.6
1,139,373	-				-0.4
1,139,373	-				-0.6
1,139,392	+				+1.7
1,139,484	+		IAI47_05380	0.20	+0.1
1,139,484	+		IAI47_05380	0.20	+1.0
1,139,484	+				+0.0
1,139,484	+		IAI47_05380	0.20	+0.5
1,139,485	-		IAI47_05380	0.21	-0.0
1,139,485	-		IAI47_05380	0.21	-3.2
1,139,485	-		IAI47_05380	0.21	+0.1
1,139,485	-		IAI47_05380	0.21	+1.0
1,139,485	-		IAI47_05380	0.21	-0.1
1,139,616	+		IAI47_05380	0.41	-1.8
1,139,616	+		IAI47_05380	0.41	+0.0
1,139,639	+		IAI47_05380	0.45	-1.1
1,139,640	-		IAI47_05380	0.45	-0.6
1,139,693	+		IAI47_05380	0.53	+0.2
1,139,694	-		IAI47_05380	0.54	-1.0
1,139,706	+		IAI47_05380	0.55	-0.1
1,139,706	+		IAI47_05380	0.55	-0.2
1,139,730	-		IAI47_05380	0.59	+0.5
1,139,792	+		IAI47_05380	0.69	+0.5
1,139,792	+		IAI47_05380	0.69	+0.8
1,139,792	+		IAI47_05380	0.69	-1.1
1,139,792	+		IAI47_05380	0.69	+1.3
1,139,793	-		IAI47_05380	0.69	+3.3
1,139,795	+		IAI47_05380	0.70	-0.2
1,139,795	+		IAI47_05380	0.70	+1.0
1,139,795	+		IAI47_05380	0.70	+1.7
1,139,796	-		IAI47_05380	0.70	+0.2
1,139,796	-		IAI47_05380	0.70	+0.7
1,139,796	-		IAI47_05380	0.70	-0.6
1,139,796	-		IAI47_05380	0.70	-0.3
1,139,889	+		IAI47_05380	0.84	+2.8
1,139,889	+		IAI47_05380	0.84	+0.5
1,139,889	+		IAI47_05380	0.84	-0.9
1,139,889	+		IAI47_05380	0.84	-0.7
1,139,889	+		IAI47_05380	0.84	-1.3
1,139,889	+		IAI47_05380	0.84	-0.4
1,139,889	+		IAI47_05380	0.84	-1.0
1,139,889	+		IAI47_05380	0.84	-0.4
1,139,889	+		IAI47_05380	0.84	+0.4
1,139,889	+		IAI47_05380	0.84	+0.5
1,139,889	+		IAI47_05380	0.84	-0.5
1,139,889	+		IAI47_05380	0.84	-0.7
1,139,890	-		IAI47_05380	0.85	+0.1
1,139,890	-		IAI47_05380	0.85	-0.2
1,139,890	-		IAI47_05380	0.85	-0.4
1,139,890	-		IAI47_05380	0.85	+0.4
1,139,890	-		IAI47_05380	0.85	-0.9
1,139,890	-		IAI47_05380	0.85	+1.3
1,139,890	-		IAI47_05380	0.85	-0.3
1,139,890	-		IAI47_05380	0.85	-1.3
1,139,890	-		IAI47_05380	0.85	+1.0
1,139,890	-		IAI47_05380	0.85	+1.7
1,139,890	-		IAI47_05380	0.85	+0.7
1,139,890	-		IAI47_05380	0.85	-0.9
1,139,890	-		IAI47_05380	0.85	+0.6
1,139,890	-		IAI47_05380	0.85	-0.5
1,139,890	-		IAI47_05380	0.85	-0.3
1,139,890	-		IAI47_05380	0.85	+0.3
1,139,890	-		IAI47_05380	0.85	+0.7
1,139,890	-		IAI47_05380	0.85	+0.7
1,139,890	-		IAI47_05380	0.85	-0.0
1,139,895	+		IAI47_05380	0.85	-0.2
1,139,895	+		IAI47_05380	0.85	+1.7
1,139,895	+		IAI47_05380	0.85	-0.5
1,139,895	+		IAI47_05380	0.85	+0.9
1,139,895	+		IAI47_05380	0.85	-0.1
1,139,895	+		IAI47_05380	0.85	-0.5
1,139,896	-		IAI47_05380	0.85	+0.1
1,139,896	-		IAI47_05380	0.85	+0.5
1,139,896	-		IAI47_05380	0.85	-0.4
1,139,896	-		IAI47_05380	0.85	+0.7
1,139,943	-				-0.5
1,139,986	-				-0.3
1,139,996	+				+0.7
1,140,099	+				-1.0
1,140,099	+				-0.2
1,140,117	+				-1.1
1,140,150	+				+1.1
1,140,151	-				-1.5
1,140,151	-				-0.7
1,140,151	-				-1.3
1,140,152	+				-0.0
1,140,152	+				+0.2
1,140,154	+				-0.5
1,140,154	+				+0.4
1,140,154	+				-0.6
1,140,154	+				+0.4
1,140,154	+				-0.0
1,140,155	-				-1.3
1,140,155	-				-0.7
1,140,155	-				-2.1
1,140,155	-				-1.6
1,140,155	-				-2.8
1,140,163	+				-0.3
1,140,187	+				-0.5
1,140,187	+				-1.9
1,140,188	-				-1.1
1,140,247	+				-0.9
1,140,247	+				-1.3
1,140,247	+				-1.5
1,140,247	+				+0.1
1,140,247	+				-1.6
1,140,247	+				+0.3
1,140,248	-				-1.3
1,140,248	-				-1.8
1,140,248	-				-2.1
1,140,248	-				-1.0
1,140,248	-				-0.3
1,140,326	+				-0.9
1,140,326	+				-0.3
1,140,326	+				-0.7
1,140,326	+				-1.2
1,140,326	+				-1.4
1,140,327	-				-0.3
1,140,327	-				-0.9
1,140,327	-				-1.6
1,140,329	+				-1.8
1,140,329	+				-1.2
1,140,329	+				-0.0
1,140,329	+				-2.9
1,140,329	+				+0.2
1,140,329	+				-0.9
1,140,329	+				-3.1
1,140,329	+				-2.3
1,140,329	+				-1.5
1,140,330	-				-2.6
1,140,330	-				-0.9
1,140,330	-				-3.3
1,140,330	-				-0.8
1,140,336	+				-2.2
1,140,336	+				-1.5
1,140,336	+				-2.3
1,140,336	+				-2.1
1,140,336	+				-0.9
1,140,336	+				-0.6
1,140,337	-				-2.8
1,140,337	-				-0.2
1,140,337	-				-1.6
1,140,337	-				-1.6
1,140,337	-				-2.2
1,140,384	-		IAI47_05385	0.14	-3.5
1,140,423	-		IAI47_05385	0.18	-0.3
1,140,423	-		IAI47_05385	0.18	-0.3
1,140,423	-		IAI47_05385	0.18	-2.0
1,140,423	-		IAI47_05385	0.18	-1.3
1,140,498	+		IAI47_05385	0.25	-0.3
1,140,499	-		IAI47_05385	0.25	-2.0
1,140,499	-		IAI47_05385	0.25	-0.5
1,140,499	-		IAI47_05385	0.25	-0.8
1,140,499	-		IAI47_05385	0.25	-0.9
1,140,499	-		IAI47_05385	0.25	-2.1
1,140,533	+		IAI47_05385	0.29	-2.3
1,140,534	-		IAI47_05385	0.29	-0.6
1,140,594	+		IAI47_05385	0.35	-0.4
1,140,594	+		IAI47_05385	0.35	+0.2
1,140,594	+		IAI47_05385	0.35	+0.1
1,140,673	+		IAI47_05385	0.43	-0.3
1,140,673	+		IAI47_05385	0.43	-2.3
1,140,673	+		IAI47_05385	0.43	-0.3
1,140,673	+		IAI47_05385	0.43	-0.7
1,140,673	+		IAI47_05385	0.43	-0.6
1,140,674	-		IAI47_05385	0.43	-1.9
1,140,674	-		IAI47_05385	0.43	-0.2
1,140,674	-		IAI47_05385	0.43	-2.3
1,140,674	-		IAI47_05385	0.43	+0.7
1,140,717	+		IAI47_05385	0.47	-0.1
1,140,717	+		IAI47_05385	0.47	-0.3
1,140,723	+		IAI47_05385	0.47	-0.7
1,140,723	+		IAI47_05385	0.47	-2.1
1,140,723	+		IAI47_05385	0.47	-0.9
1,140,723	+		IAI47_05385	0.47	-0.5
1,140,723	+		IAI47_05385	0.47	-0.5
1,140,723	+		IAI47_05385	0.47	-0.8
1,140,723	+		IAI47_05385	0.47	-0.6
1,140,724	-		IAI47_05385	0.48	-2.1
1,140,724	-		IAI47_05385	0.48	-1.3
1,140,724	-		IAI47_05385	0.48	-2.7
1,140,724	-		IAI47_05385	0.48	-0.9
1,140,724	-		IAI47_05385	0.48	+0.2
1,140,724	-		IAI47_05385	0.48	-1.0
1,140,788	+		IAI47_05385	0.54	-1.8
1,140,788	+		IAI47_05385	0.54	-2.8
1,140,788	+		IAI47_05385	0.54	-1.9
1,140,788	+		IAI47_05385	0.54	-0.7
1,140,788	+		IAI47_05385	0.54	-0.7
1,140,789	-		IAI47_05385	0.54	-2.5
1,140,789	-		IAI47_05385	0.54	-0.3
1,140,885	-		IAI47_05385	0.63	-1.9
1,140,905	+		IAI47_05385	0.65	-0.3
1,140,905	+		IAI47_05385	0.65	-0.6
1,140,906	-		IAI47_05385	0.65	-1.1
1,140,906	-		IAI47_05385	0.65	-1.2
1,140,906	-		IAI47_05385	0.65	-1.3
1,140,906	-		IAI47_05385	0.65	-2.6
1,140,921	+		IAI47_05385	0.67	-2.8
1,140,936	+		IAI47_05385	0.68	-1.2
1,140,936	+		IAI47_05385	0.68	-1.4
1,140,936	+		IAI47_05385	0.68	-1.1
1,140,936	+		IAI47_05385	0.68	-0.6
1,140,936	+		IAI47_05385	0.68	-0.5
1,140,936	+		IAI47_05385	0.68	-2.1
1,140,937	-		IAI47_05385	0.69	-0.3
1,140,937	-		IAI47_05385	0.69	-1.9
1,140,937	-		IAI47_05385	0.69	-2.3
1,140,963	-		IAI47_05385	0.71	+0.0