Strain Fitness in Pantoea sp. MT58 around IAI47_04735

Experiment: Ying_OrganicAcid7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04730 and IAI47_04735 are separated by 14 nucleotidesIAI47_04735 and IAI47_04740 overlap by 14 nucleotidesIAI47_04740 and IAI47_04745 overlap by 25 nucleotidesIAI47_04745 and IAI47_04750 are separated by 13 nucleotides IAI47_04730: IAI47_04730 - toprim domain-containing protein, at 996,680 to 998,995 _04730 IAI47_04735: IAI47_04735 - DUF5375 family protein, at 999,010 to 999,351 _04735 IAI47_04740: IAI47_04740 - hypothetical protein, at 999,338 to 999,604 _04740 IAI47_04745: IAI47_04745 - ash family protein, at 999,580 to 1,000,128 _04745 IAI47_04750: IAI47_04750 - hypothetical protein, at 1,000,142 to 1,000,384 _04750 Position (kb) 999 1000Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 998.102 kb on - strand, within IAI47_04730at 998.195 kb on + strand, within IAI47_04730at 998.196 kb on - strand, within IAI47_04730at 998.196 kb on - strand, within IAI47_04730at 998.310 kb on + strand, within IAI47_04730at 998.311 kb on - strand, within IAI47_04730at 998.355 kb on + strand, within IAI47_04730at 998.355 kb on + strand, within IAI47_04730at 998.355 kb on + strand, within IAI47_04730at 998.356 kb on - strand, within IAI47_04730at 998.356 kb on - strand, within IAI47_04730at 998.356 kb on - strand, within IAI47_04730at 998.356 kb on - strand, within IAI47_04730at 998.406 kb on + strand, within IAI47_04730at 998.406 kb on + strand, within IAI47_04730at 998.406 kb on + strand, within IAI47_04730at 998.406 kb on + strand, within IAI47_04730at 998.406 kb on + strand, within IAI47_04730at 998.406 kb on + strand, within IAI47_04730at 998.406 kb on + strand, within IAI47_04730at 998.407 kb on - strand, within IAI47_04730at 998.407 kb on - strand, within IAI47_04730at 998.407 kb on - strand, within IAI47_04730at 998.407 kb on - strand, within IAI47_04730at 998.507 kb on - strand, within IAI47_04730at 998.602 kb on - strand, within IAI47_04730at 998.636 kb on - strand, within IAI47_04730at 998.702 kb on - strand, within IAI47_04730at 998.747 kb on + strand, within IAI47_04730at 998.761 kb on + strand, within IAI47_04730at 998.771 kb on - strandat 998.821 kb on + strandat 998.822 kb on - strandat 998.970 kb on - strandat 998.986 kb on + strandat 998.986 kb on + strandat 998.987 kb on - strandat 998.987 kb on - strandat 998.987 kb on - strandat 998.995 kb on + strandat 998.995 kb on + strandat 998.995 kb on + strandat 998.996 kb on - strandat 999.127 kb on - strand, within IAI47_04735at 999.185 kb on + strand, within IAI47_04735at 999.185 kb on + strand, within IAI47_04735at 999.185 kb on + strand, within IAI47_04735at 999.185 kb on + strand, within IAI47_04735at 999.186 kb on - strand, within IAI47_04735at 999.186 kb on - strand, within IAI47_04735at 999.186 kb on - strand, within IAI47_04735at 999.186 kb on - strand, within IAI47_04735at 999.186 kb on - strand, within IAI47_04735at 999.186 kb on - strand, within IAI47_04735at 999.186 kb on - strand, within IAI47_04735at 999.186 kb on - strand, within IAI47_04735at 999.275 kb on + strand, within IAI47_04735at 999.300 kb on - strand, within IAI47_04735at 999.313 kb on + strand, within IAI47_04735at 999.313 kb on + strand, within IAI47_04735at 999.313 kb on + strand, within IAI47_04735at 999.314 kb on - strand, within IAI47_04735at 999.369 kb on + strand, within IAI47_04740at 999.369 kb on - strand, within IAI47_04740at 999.543 kb on + strand, within IAI47_04740at 999.543 kb on + strand, within IAI47_04740at 999.544 kb on - strand, within IAI47_04740at 999.544 kb on - strand, within IAI47_04740at 999.564 kb on + strand, within IAI47_04740at 999.564 kb on + strand, within IAI47_04740at 999.564 kb on + strand, within IAI47_04740at 999.564 kb on + strand, within IAI47_04740at 999.598 kb on + strandat 999.598 kb on + strandat 999.598 kb on + strandat 999.598 kb on + strandat 999.598 kb on + strandat 999.599 kb on - strandat 999.601 kb on + strandat 999.601 kb on + strandat 999.601 kb on + strandat 999.602 kb on - strandat 999.602 kb on - strandat 999.602 kb on - strandat 999.602 kb on - strandat 999.602 kb on - strandat 999.650 kb on + strand, within IAI47_04745at 999.650 kb on + strand, within IAI47_04745at 999.651 kb on - strand, within IAI47_04745at 999.651 kb on - strand, within IAI47_04745at 999.651 kb on - strand, within IAI47_04745at 999.699 kb on + strand, within IAI47_04745at 999.700 kb on - strand, within IAI47_04745at 999.708 kb on + strand, within IAI47_04745at 999.708 kb on + strand, within IAI47_04745at 999.708 kb on + strand, within IAI47_04745at 999.708 kb on + strand, within IAI47_04745at 999.709 kb on - strand, within IAI47_04745at 999.709 kb on - strand, within IAI47_04745at 999.709 kb on - strand, within IAI47_04745at 999.709 kb on - strand, within IAI47_04745at 999.753 kb on + strand, within IAI47_04745at 999.753 kb on + strand, within IAI47_04745at 999.754 kb on - strand, within IAI47_04745at 999.754 kb on - strand, within IAI47_04745at 999.780 kb on + strand, within IAI47_04745at 999.780 kb on + strand, within IAI47_04745at 999.795 kb on + strand, within IAI47_04745at 999.795 kb on + strand, within IAI47_04745at 999.795 kb on + strand, within IAI47_04745at 999.795 kb on + strand, within IAI47_04745at 999.795 kb on + strand, within IAI47_04745at 999.795 kb on + strand, within IAI47_04745at 999.796 kb on - strand, within IAI47_04745at 999.814 kb on + strand, within IAI47_04745at 999.814 kb on + strand, within IAI47_04745at 999.815 kb on - strand, within IAI47_04745at 999.820 kb on + strand, within IAI47_04745at 999.820 kb on + strand, within IAI47_04745at 999.820 kb on + strand, within IAI47_04745at 999.820 kb on + strand, within IAI47_04745at 999.820 kb on + strand, within IAI47_04745at 999.820 kb on + strand, within IAI47_04745at 999.820 kb on + strand, within IAI47_04745at 999.821 kb on - strand, within IAI47_04745at 999.822 kb on + strand, within IAI47_04745at 999.823 kb on - strand, within IAI47_04745at 999.823 kb on - strand, within IAI47_04745at 999.829 kb on - strand, within IAI47_04745at 999.829 kb on - strand, within IAI47_04745at 999.829 kb on - strand, within IAI47_04745at 999.843 kb on + strand, within IAI47_04745at 999.844 kb on - strand, within IAI47_04745at 999.844 kb on - strandat 999.844 kb on - strand, within IAI47_04745at 999.874 kb on - strand, within IAI47_04745at 999.935 kb on - strand, within IAI47_04745at 999.935 kb on - strand, within IAI47_04745at 1000.036 kb on + strand, within IAI47_04745at 1000.037 kb on - strand, within IAI47_04745at 1000.037 kb on - strand, within IAI47_04745at 1000.037 kb on - strand, within IAI47_04745at 1000.037 kb on - strand, within IAI47_04745at 1000.037 kb on - strand, within IAI47_04745at 1000.051 kb on - strand, within IAI47_04745at 1000.051 kb on - strand, within IAI47_04745at 1000.051 kb on - strand, within IAI47_04745at 1000.088 kb on + strandat 1000.088 kb on + strandat 1000.088 kb on + strandat 1000.089 kb on - strandat 1000.089 kb on - strandat 1000.089 kb on - strandat 1000.091 kb on - strandat 1000.091 kb on - strandat 1000.243 kb on + strand, within IAI47_04750at 1000.243 kb on + strand, within IAI47_04750at 1000.244 kb on - strand, within IAI47_04750at 1000.248 kb on + strand, within IAI47_04750at 1000.274 kb on - strand, within IAI47_04750

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
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998,102 - IAI47_04730 0.61 -2.6
998,195 + IAI47_04730 0.65 +0.3
998,196 - IAI47_04730 0.65 +0.1
998,196 - IAI47_04730 0.65 -0.1
998,310 + IAI47_04730 0.70 +1.1
998,311 - IAI47_04730 0.70 +0.7
998,355 + IAI47_04730 0.72 -0.3
998,355 + IAI47_04730 0.72 -1.2
998,355 + IAI47_04730 0.72 +0.7
998,356 - IAI47_04730 0.72 +0.2
998,356 - IAI47_04730 0.72 +1.0
998,356 - IAI47_04730 0.72 -0.4
998,356 - IAI47_04730 0.72 -0.0
998,406 + IAI47_04730 0.75 +0.7
998,406 + IAI47_04730 0.75 +0.3
998,406 + IAI47_04730 0.75 +0.3
998,406 + IAI47_04730 0.75 +0.7
998,406 + IAI47_04730 0.75 +1.4
998,406 + IAI47_04730 0.75 -0.7
998,406 + IAI47_04730 0.75 -0.2
998,407 - IAI47_04730 0.75 +2.1
998,407 - IAI47_04730 0.75 -0.5
998,407 - IAI47_04730 0.75 -1.6
998,407 - IAI47_04730 0.75 +0.2
998,507 - IAI47_04730 0.79 -1.3
998,602 - IAI47_04730 0.83 +0.7
998,636 - IAI47_04730 0.84 -0.3
998,702 - IAI47_04730 0.87 +0.4
998,747 + IAI47_04730 0.89 -1.6
998,761 + IAI47_04730 0.90 +2.3
998,771 - -1.3
998,821 + +1.1
998,822 - +2.3
998,970 - +1.2
998,986 + -0.4
998,986 + -0.5
998,987 - +1.0
998,987 - -0.7
998,987 - +0.7
998,995 + -0.3
998,995 + -0.9
998,995 + -1.7
998,996 - +0.7
999,127 - IAI47_04735 0.34 -1.4
999,185 + IAI47_04735 0.51 -0.9
999,185 + IAI47_04735 0.51 +0.4
999,185 + IAI47_04735 0.51 -0.3
999,185 + IAI47_04735 0.51 +0.7
999,186 - IAI47_04735 0.51 -0.3
999,186 - IAI47_04735 0.51 -2.0
999,186 - IAI47_04735 0.51 -1.0
999,186 - IAI47_04735 0.51 -2.0
999,186 - IAI47_04735 0.51 -0.6
999,186 - IAI47_04735 0.51 +0.9
999,186 - IAI47_04735 0.51 +0.7
999,186 - IAI47_04735 0.51 -0.9
999,275 + IAI47_04735 0.77 -1.4
999,300 - IAI47_04735 0.85 -1.3
999,313 + IAI47_04735 0.89 +0.1
999,313 + IAI47_04735 0.89 +0.2
999,313 + IAI47_04735 0.89 +0.3
999,314 - IAI47_04735 0.89 -1.1
999,369 + IAI47_04740 0.12 -1.3
999,369 - IAI47_04740 0.12 -1.8
999,543 + IAI47_04740 0.77 -0.3
999,543 + IAI47_04740 0.77 +2.9
999,544 - IAI47_04740 0.77 +0.2
999,544 - IAI47_04740 0.77 +1.7
999,564 + IAI47_04740 0.85 +0.8
999,564 + IAI47_04740 0.85 +0.7
999,564 + IAI47_04740 0.85 +0.5
999,564 + IAI47_04740 0.85 +0.8
999,598 + -0.3
999,598 + +1.1
999,598 + +0.5
999,598 + +0.0
999,598 + -0.9
999,599 - +0.7
999,601 + -0.1
999,601 + +0.0
999,601 + -1.7
999,602 - +1.5
999,602 - -0.3
999,602 - -1.1
999,602 - +1.4
999,602 - -0.2
999,650 + IAI47_04745 0.13 +0.5
999,650 + IAI47_04745 0.13 +0.3
999,651 - IAI47_04745 0.13 -0.0
999,651 - IAI47_04745 0.13 -0.9
999,651 - IAI47_04745 0.13 -0.9
999,699 + IAI47_04745 0.22 +0.5
999,700 - IAI47_04745 0.22 -0.1
999,708 + IAI47_04745 0.23 +0.1
999,708 + IAI47_04745 0.23 -0.0
999,708 + IAI47_04745 0.23 -0.3
999,708 + IAI47_04745 0.23 +0.3
999,709 - IAI47_04745 0.23 +0.7
999,709 - IAI47_04745 0.23 -0.3
999,709 - IAI47_04745 0.23 +1.2
999,709 - IAI47_04745 0.23 -0.3
999,753 + IAI47_04745 0.32 +0.5
999,753 + IAI47_04745 0.32 -0.0
999,754 - IAI47_04745 0.32 +0.4
999,754 - IAI47_04745 0.32 +0.7
999,780 + IAI47_04745 0.36 -3.3
999,780 + IAI47_04745 0.36 -0.1
999,795 + IAI47_04745 0.39 -0.3
999,795 + IAI47_04745 0.39 -1.1
999,795 + IAI47_04745 0.39 -0.9
999,795 + IAI47_04745 0.39 +0.7
999,795 + IAI47_04745 0.39 -0.9
999,795 + IAI47_04745 0.39 -0.3
999,796 - IAI47_04745 0.39 +0.2
999,814 + IAI47_04745 0.43 -0.0
999,814 + IAI47_04745 0.43 -0.2
999,815 - IAI47_04745 0.43 +0.9
999,820 + IAI47_04745 0.44 +0.1
999,820 + IAI47_04745 0.44 +1.6
999,820 + IAI47_04745 0.44 -1.1
999,820 + IAI47_04745 0.44 -0.9
999,820 + IAI47_04745 0.44 -0.7
999,820 + IAI47_04745 0.44 +0.2
999,820 + IAI47_04745 0.44 -0.6
999,821 - IAI47_04745 0.44 -1.6
999,822 + IAI47_04745 0.44 -0.4
999,823 - IAI47_04745 0.44 -0.1
999,823 - IAI47_04745 0.44 -1.7
999,829 - IAI47_04745 0.45 +0.7
999,829 - IAI47_04745 0.45 -0.8
999,829 - IAI47_04745 0.45 -0.7
999,843 + IAI47_04745 0.48 +3.7
999,844 - IAI47_04745 0.48 +0.3
999,844 - -0.7
999,844 - IAI47_04745 0.48 +0.3
999,874 - IAI47_04745 0.54 -0.3
999,935 - IAI47_04745 0.65 -0.1
999,935 - IAI47_04745 0.65 -0.1
1,000,036 + IAI47_04745 0.83 -0.3
1,000,037 - IAI47_04745 0.83 -0.3
1,000,037 - IAI47_04745 0.83 +1.7
1,000,037 - IAI47_04745 0.83 -1.3
1,000,037 - IAI47_04745 0.83 +1.7
1,000,037 - IAI47_04745 0.83 +0.9
1,000,051 - IAI47_04745 0.86 -0.0
1,000,051 - IAI47_04745 0.86 +0.6
1,000,051 - IAI47_04745 0.86 -0.8
1,000,088 + -1.4
1,000,088 + +0.1
1,000,088 + +0.6
1,000,089 - -2.1
1,000,089 - -1.5
1,000,089 - -2.4
1,000,091 - -1.0
1,000,091 - +0.2
1,000,243 + IAI47_04750 0.42 +0.9
1,000,243 + IAI47_04750 0.42 -1.9
1,000,244 - IAI47_04750 0.42 +1.4
1,000,248 + IAI47_04750 0.44 -1.4
1,000,274 - IAI47_04750 0.54 -0.6

Or see this region's nucleotide sequence