Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03125 and IAI47_03130 are separated by 7 nucleotides IAI47_03130 and IAI47_03135 are separated by 142 nucleotides IAI47_03135 and IAI47_03140 are separated by 213 nucleotides IAI47_03140 and IAI47_03145 overlap by 4 nucleotides
IAI47_03125: IAI47_03125 - glutathionylspermidine synthase family protein, at 647,438 to 648,598
_03125
IAI47_03130: IAI47_03130 - DUF1190 family protein, at 648,606 to 649,277
_03130
IAI47_03135: IAI47_03135 - outer membrane channel protein TolC, at 649,420 to 650,886
_03135
IAI47_03140: IAI47_03140 - ADP-ribose diphosphatase, at 651,100 to 651,735
_03140
IAI47_03145: IAI47_03145 - DUF1249 family protein, at 651,732 to 652,157
_03145
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 648.486 kb on + strand at 648.486 kb on + strand at 648.486 kb on + strand at 648.487 kb on - strand at 648.487 kb on - strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.508 kb on - strand at 648.508 kb on - strand at 648.526 kb on + strand at 648.527 kb on - strand at 648.527 kb on - strand at 648.527 kb on - strand at 648.608 kb on - strand at 648.632 kb on + strand at 648.632 kb on + strand at 648.632 kb on + strand at 648.632 kb on + strand at 648.633 kb on - strand at 648.699 kb on - strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.783 kb on - strand, within IAI47_03130 at 648.783 kb on - strand, within IAI47_03130 at 648.783 kb on - strand, within IAI47_03130 at 648.896 kb on - strand, within IAI47_03130 at 648.896 kb on - strand, within IAI47_03130 at 649.033 kb on + strand, within IAI47_03130 at 649.046 kb on + strand, within IAI47_03130 at 649.046 kb on + strand, within IAI47_03130 at 649.046 kb on + strand, within IAI47_03130 at 649.046 kb on + strand, within IAI47_03130 at 649.047 kb on - strand at 649.047 kb on - strand, within IAI47_03130 at 649.082 kb on + strand, within IAI47_03130 at 649.082 kb on + strand, within IAI47_03130 at 649.083 kb on - strand, within IAI47_03130 at 649.083 kb on - strand, within IAI47_03130 at 649.083 kb on - strand, within IAI47_03130 at 649.085 kb on + strand, within IAI47_03130 at 649.086 kb on - strand, within IAI47_03130 at 649.086 kb on - strand, within IAI47_03130 at 649.086 kb on - strand, within IAI47_03130 at 649.138 kb on + strand, within IAI47_03130 at 649.138 kb on + strand, within IAI47_03130 at 649.138 kb on + strand, within IAI47_03130 at 649.139 kb on - strand, within IAI47_03130 at 649.139 kb on - strand, within IAI47_03130 at 649.139 kb on - strand, within IAI47_03130 at 649.139 kb on - strand, within IAI47_03130 at 649.181 kb on + strand, within IAI47_03130 at 649.181 kb on + strand, within IAI47_03130 at 649.181 kb on + strand, within IAI47_03130 at 649.181 kb on + strand, within IAI47_03130 at 649.181 kb on + strand, within IAI47_03130 at 649.182 kb on - strand, within IAI47_03130 at 649.182 kb on - strand, within IAI47_03130 at 649.185 kb on + strand, within IAI47_03130 at 649.185 kb on + strand, within IAI47_03130 at 649.186 kb on - strand, within IAI47_03130 at 649.186 kb on - strand, within IAI47_03130 at 649.186 kb on - strand, within IAI47_03130 at 649.203 kb on - strand, within IAI47_03130 at 649.253 kb on - strand at 649.259 kb on + strand at 649.260 kb on - strand at 649.278 kb on + strand at 649.278 kb on + strand at 649.279 kb on - strand at 649.279 kb on - strand at 649.279 kb on - strand at 649.279 kb on - strand at 649.285 kb on - strand at 649.285 kb on - strand at 649.285 kb on - strand at 649.285 kb on - strand at 649.308 kb on + strand at 649.308 kb on + strand at 649.308 kb on + strand at 649.308 kb on + strand at 649.308 kb on + strand at 649.308 kb on + strand at 649.309 kb on - strand at 649.309 kb on - strand at 649.309 kb on - strand at 649.309 kb on - strand at 649.313 kb on + strand at 649.313 kb on + strand at 649.351 kb on + strand at 649.351 kb on + strand at 649.351 kb on + strand at 649.351 kb on + strand at 649.352 kb on - strand at 649.366 kb on + strand at 649.366 kb on + strand at 649.366 kb on + strand at 649.366 kb on + strand at 649.367 kb on - strand at 649.367 kb on - strand at 649.370 kb on + strand at 649.370 kb on + strand at 649.370 kb on + strand at 649.370 kb on + strand at 649.370 kb on + strand at 649.370 kb on + strand at 649.371 kb on - strand at 649.371 kb on - strand at 649.371 kb on - strand at 649.371 kb on - strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.376 kb on + strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.421 kb on + strand at 649.422 kb on - strand at 649.422 kb on - strand at 649.422 kb on - strand at 649.438 kb on - strand at 649.622 kb on + strand, within IAI47_03135 at 649.623 kb on - strand, within IAI47_03135 at 649.623 kb on - strand, within IAI47_03135 at 649.650 kb on - strand, within IAI47_03135 at 649.654 kb on - strand, within IAI47_03135 at 649.654 kb on - strand, within IAI47_03135 at 649.654 kb on - strand, within IAI47_03135 at 649.732 kb on - strand, within IAI47_03135 at 649.816 kb on - strand, within IAI47_03135 at 649.949 kb on + strand, within IAI47_03135 at 649.949 kb on + strand, within IAI47_03135 at 649.949 kb on + strand, within IAI47_03135 at 650.039 kb on + strand, within IAI47_03135 at 650.040 kb on - strand, within IAI47_03135 at 650.089 kb on - strand, within IAI47_03135 at 650.181 kb on + strand, within IAI47_03135 at 650.250 kb on + strand, within IAI47_03135 at 650.251 kb on - strand, within IAI47_03135 at 650.251 kb on - strand, within IAI47_03135 at 650.251 kb on - strand, within IAI47_03135 at 650.253 kb on - strand, within IAI47_03135 at 650.253 kb on - strand, within IAI47_03135 at 650.253 kb on - strand, within IAI47_03135 at 650.253 kb on - strand, within IAI47_03135 at 650.285 kb on - strand, within IAI47_03135 at 650.285 kb on - strand, within IAI47_03135 at 650.285 kb on - strand, within IAI47_03135 at 650.339 kb on + strand, within IAI47_03135 at 650.340 kb on - strand, within IAI47_03135 at 650.425 kb on - strand, within IAI47_03135 at 650.425 kb on - strand, within IAI47_03135 at 650.448 kb on - strand, within IAI47_03135 at 650.448 kb on - strand, within IAI47_03135 at 650.528 kb on + strand, within IAI47_03135 at 650.528 kb on + strand, within IAI47_03135 at 650.650 kb on - strand, within IAI47_03135 at 650.679 kb on - strand, within IAI47_03135 at 650.705 kb on - strand, within IAI47_03135 at 650.705 kb on - strand, within IAI47_03135 at 650.705 kb on - strand, within IAI47_03135 at 650.707 kb on + strand, within IAI47_03135 at 650.707 kb on + strand, within IAI47_03135 at 650.854 kb on - strand at 650.854 kb on - strand at 650.854 kb on - strand at 650.934 kb on - strand at 650.979 kb on + strand at 650.979 kb on + strand at 650.979 kb on + strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 651.001 kb on + strand at 651.001 kb on + strand at 651.001 kb on + strand at 651.001 kb on + strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.007 kb on + strand at 651.008 kb on - strand at 651.008 kb on - strand at 651.012 kb on + strand at 651.012 kb on + strand at 651.012 kb on + strand at 651.013 kb on - strand at 651.013 kb on - strand at 651.013 kb on - strand at 651.013 kb on - strand at 651.017 kb on - strand at 651.017 kb on - strand at 651.021 kb on - strand at 651.021 kb on - strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.055 kb on - strand at 651.055 kb on - strand at 651.147 kb on - strand at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.222 kb on + strand, within IAI47_03140 at 651.223 kb on - strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.303 kb on - strand, within IAI47_03140 at 651.346 kb on + strand, within IAI47_03140 at 651.346 kb on + strand, within IAI47_03140 at 651.347 kb on - strand, within IAI47_03140 at 651.394 kb on - strand, within IAI47_03140 at 651.471 kb on + strand, within IAI47_03140 at 651.472 kb on - strand, within IAI47_03140 at 651.472 kb on - strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.488 kb on - strand, within IAI47_03140 at 651.594 kb on + strand, within IAI47_03140 at 651.594 kb on + strand, within IAI47_03140 at 651.595 kb on - strand, within IAI47_03140 at 651.595 kb on - strand, within IAI47_03140 at 651.629 kb on - strand, within IAI47_03140 at 651.629 kb on - strand, within IAI47_03140 at 651.657 kb on + strand, within IAI47_03140 at 651.711 kb on - strand at 651.744 kb on + strand at 651.744 kb on + strand at 651.745 kb on - strand at 651.745 kb on - strand at 651.746 kb on + strand at 651.746 kb on + strand at 651.747 kb on - strand at 651.747 kb on - strand at 651.747 kb on - strand at 651.799 kb on + strand, within IAI47_03145 at 651.800 kb on - strand, within IAI47_03145 at 651.800 kb on - strand, within IAI47_03145 at 651.846 kb on + strand, within IAI47_03145 at 651.847 kb on - strand, within IAI47_03145 at 651.847 kb on - strand, within IAI47_03145
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 648,486 + -0.3 648,486 + +1.7 648,486 + +0.7 648,487 - +0.7 648,487 - +0.7 648,489 + -0.4 648,489 + +1.5 648,489 + -0.8 648,489 + -1.3 648,489 + +0.2 648,489 + +0.3 648,489 + -0.3 648,489 + -0.4 648,490 - +0.7 648,490 - -2.1 648,490 - -1.4 648,490 - -0.8 648,490 - +0.0 648,490 - -0.3 648,490 - -1.6 648,490 - -0.6 648,490 - -0.9 648,490 - -1.3 648,490 - -0.5 648,490 - -0.1 648,508 - -0.3 648,508 - -0.7 648,526 + -0.8 648,527 - +0.2 648,527 - -1.3 648,527 - -2.3 648,608 - -0.0 648,632 + +0.7 648,632 + -0.7 648,632 + -0.8 648,632 + +0.3 648,633 - +0.3 648,699 - IAI47_03130 0.14 +0.3 648,778 + IAI47_03130 0.26 +1.4 648,778 + IAI47_03130 0.26 -0.7 648,778 + IAI47_03130 0.26 -0.9 648,778 + IAI47_03130 0.26 +0.4 648,778 + IAI47_03130 0.26 -2.1 648,778 + IAI47_03130 0.26 -1.3 648,778 + IAI47_03130 0.26 -0.6 648,778 + IAI47_03130 0.26 +0.0 648,778 + IAI47_03130 0.26 -0.1 648,778 + IAI47_03130 0.26 +2.7 648,778 + IAI47_03130 0.26 -0.4 648,778 + IAI47_03130 0.26 -0.1 648,779 - IAI47_03130 0.26 +0.7 648,779 - IAI47_03130 0.26 +0.5 648,779 - IAI47_03130 0.26 -1.6 648,779 - IAI47_03130 0.26 +1.3 648,779 - IAI47_03130 0.26 +0.5 648,779 - IAI47_03130 0.26 +0.1 648,779 - IAI47_03130 0.26 +0.1 648,779 - IAI47_03130 0.26 -1.3 648,779 - IAI47_03130 0.26 -0.6 648,779 - IAI47_03130 0.26 -0.7 648,779 - IAI47_03130 0.26 +0.6 648,779 - IAI47_03130 0.26 +1.5 648,779 - IAI47_03130 0.26 +1.1 648,779 - IAI47_03130 0.26 +0.7 648,783 - IAI47_03130 0.26 -1.8 648,783 - IAI47_03130 0.26 -1.6 648,783 - IAI47_03130 0.26 -0.8 648,896 - IAI47_03130 0.43 -0.8 648,896 - IAI47_03130 0.43 +0.2 649,033 + IAI47_03130 0.64 -0.3 649,046 + IAI47_03130 0.65 -1.3 649,046 + IAI47_03130 0.65 +0.3 649,046 + IAI47_03130 0.65 +0.2 649,046 + IAI47_03130 0.65 -0.3 649,047 - +0.7 649,047 - IAI47_03130 0.66 +1.0 649,082 + IAI47_03130 0.71 +0.5 649,082 + IAI47_03130 0.71 +1.5 649,083 - IAI47_03130 0.71 -2.1 649,083 - IAI47_03130 0.71 -1.0 649,083 - IAI47_03130 0.71 +0.5 649,085 + IAI47_03130 0.71 -0.8 649,086 - IAI47_03130 0.71 -1.0 649,086 - IAI47_03130 0.71 -2.1 649,086 - IAI47_03130 0.71 -0.3 649,138 + IAI47_03130 0.79 -1.1 649,138 + IAI47_03130 0.79 +1.7 649,138 + IAI47_03130 0.79 -1.6 649,139 - IAI47_03130 0.79 -1.8 649,139 - IAI47_03130 0.79 -2.8 649,139 - IAI47_03130 0.79 -0.5 649,139 - IAI47_03130 0.79 +0.3 649,181 + IAI47_03130 0.86 -2.3 649,181 + IAI47_03130 0.86 -1.0 649,181 + IAI47_03130 0.86 -0.8 649,181 + IAI47_03130 0.86 -2.4 649,181 + IAI47_03130 0.86 -0.8 649,182 - IAI47_03130 0.86 +0.3 649,182 - IAI47_03130 0.86 -1.6 649,185 + IAI47_03130 0.86 -0.3 649,185 + IAI47_03130 0.86 -0.2 649,186 - IAI47_03130 0.86 -1.3 649,186 - IAI47_03130 0.86 -0.7 649,186 - IAI47_03130 0.86 -0.8 649,203 - IAI47_03130 0.89 -1.1 649,253 - -0.3 649,259 + +2.1 649,260 - +2.3 649,278 + -0.2 649,278 + +0.6 649,279 - -0.8 649,279 - -0.8 649,279 - -0.4 649,279 - -2.6 649,285 - -1.7 649,285 - -1.7 649,285 - +0.0 649,285 - +0.2 649,308 + +0.5 649,308 + +0.4 649,308 + -3.1 649,308 + -0.3 649,308 + -1.3 649,308 + -0.1 649,309 - 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Or see this region's nucleotide sequence