Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01670 and IAI47_01675 are separated by 217 nucleotides IAI47_01675 and IAI47_01680 are separated by 359 nucleotides
IAI47_01670: IAI47_01670 - YhgN family NAAT transporter, at 362,076 to 362,669
_01670
IAI47_01675: IAI47_01675 - aspartate-semialdehyde dehydrogenase, at 362,887 to 363,996
_01675
IAI47_01680: IAI47_01680 - 1,4-alpha-glucan branching enzyme, at 364,356 to 366,539
_01680
Position (kb) 362
363
364 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 361.928 kb on + strand at 361.938 kb on + strand at 361.954 kb on + strand at 361.954 kb on + strand at 361.954 kb on + strand at 361.954 kb on + strand at 361.955 kb on - strand at 361.955 kb on - strand at 361.955 kb on - strand at 361.955 kb on - strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.973 kb on - strand at 361.973 kb on - strand at 361.973 kb on - strand at 361.974 kb on + strand at 361.974 kb on + strand at 361.974 kb on + strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.976 kb on + strand at 361.976 kb on + strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.980 kb on + strand at 361.980 kb on + strand at 361.980 kb on + strand at 361.981 kb on - strand at 361.983 kb on + strand at 361.984 kb on - strand at 361.987 kb on - strand at 362.014 kb on + strand at 362.014 kb on + strand at 362.014 kb on + strand at 362.014 kb on + strand at 362.058 kb on - strand at 362.058 kb on - strand at 362.058 kb on - strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.078 kb on - strand at 362.078 kb on - strand at 362.078 kb on - strand at 362.078 kb on - strand at 362.089 kb on + strand at 362.129 kb on + strand at 362.129 kb on + strand at 362.129 kb on + strand at 362.129 kb on + strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.136 kb on + strand, within IAI47_01670 at 362.136 kb on + strand, within IAI47_01670 at 362.137 kb on - strand, within IAI47_01670 at 362.137 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.278 kb on + strand, within IAI47_01670 at 362.279 kb on - strand, within IAI47_01670 at 362.279 kb on - strand, within IAI47_01670 at 362.374 kb on - strand, within IAI47_01670 at 362.417 kb on + strand, within IAI47_01670 at 362.417 kb on + strand, within IAI47_01670 at 362.551 kb on - strand, within IAI47_01670 at 362.551 kb on - strand, within IAI47_01670 at 362.586 kb on + strand, within IAI47_01670 at 362.586 kb on + strand, within IAI47_01670 at 362.586 kb on + strand, within IAI47_01670 at 362.597 kb on + strand, within IAI47_01670 at 362.597 kb on + strand, within IAI47_01670 at 362.598 kb on - strand, within IAI47_01670 at 362.628 kb on - strand at 362.628 kb on - strand at 362.628 kb on - strand at 362.631 kb on + strand at 362.631 kb on + strand at 362.631 kb on + strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.643 kb on + strand at 362.643 kb on + strand at 362.644 kb on - strand at 362.644 kb on - strand at 362.644 kb on - strand at 362.644 kb on - strand at 362.676 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.710 kb on - strand at 362.713 kb on + strand at 362.714 kb on - strand at 362.745 kb on - strand at 362.793 kb on + strand at 362.793 kb on + strand at 362.793 kb on + strand at 362.793 kb on + strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.800 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.826 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 363.986 kb on + strand at 363.986 kb on + strand at 363.986 kb on + strand at 363.986 kb on + strand at 363.986 kb on + strand at 363.994 kb on + strand at 363.994 kb on + strand at 363.994 kb on + strand at 363.995 kb on - strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.005 kb on - strand at 364.005 kb on - strand at 364.005 kb on - strand at 364.005 kb on - strand at 364.005 kb on - strand at 364.005 kb on - strand at 364.048 kb on + strand at 364.062 kb on + strand at 364.062 kb on + strand at 364.062 kb on + strand at 364.063 kb on - strand at 364.063 kb on - strand at 364.075 kb on - strand at 364.116 kb on + strand at 364.116 kb on + strand at 364.117 kb on - strand at 364.117 kb on - strand at 364.117 kb on - strand at 364.125 kb on + strand at 364.125 kb on + strand at 364.125 kb on + strand at 364.125 kb on + strand at 364.126 kb on - strand at 364.126 kb on - strand at 364.126 kb on - strand at 364.154 kb on + strand at 364.154 kb on + strand at 364.154 kb on + strand at 364.155 kb on - strand at 364.155 kb on - strand at 364.155 kb on - strand at 364.155 kb on - strand at 364.155 kb on - strand at 364.155 kb on - strand at 364.161 kb on + strand at 364.161 kb on + strand at 364.162 kb on - strand at 364.162 kb on - strand at 364.162 kb on - strand at 364.162 kb on - strand at 364.162 kb on - strand at 364.181 kb on + strand at 364.181 kb on + strand at 364.181 kb on + strand at 364.202 kb on + strand at 364.202 kb on + strand at 364.202 kb on + strand at 364.215 kb on + strand at 364.253 kb on + strand at 364.253 kb on + strand at 364.254 kb on - strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.271 kb on - strand at 364.271 kb on - strand at 364.271 kb on - strand at 364.311 kb on + strand at 364.311 kb on + strand at 364.311 kb on + strand at 364.312 kb on - strand at 364.312 kb on - strand at 364.338 kb on + strand at 364.339 kb on - strand at 364.339 kb on - strand at 364.403 kb on + strand at 364.403 kb on + strand at 364.407 kb on + strand at 364.407 kb on + strand at 364.408 kb on - strand at 364.426 kb on + strand at 364.427 kb on - strand at 364.429 kb on + strand at 364.429 kb on + strand at 364.429 kb on + strand at 364.430 kb on - strand at 364.430 kb on - strand at 364.520 kb on + strand at 364.650 kb on + strand, within IAI47_01680 at 364.651 kb on - strand, within IAI47_01680 at 364.651 kb on - strand, within IAI47_01680 at 364.651 kb on - strand, within IAI47_01680 at 364.870 kb on + strand, within IAI47_01680 at 364.870 kb on + strand, within IAI47_01680 at 364.870 kb on + strand, within IAI47_01680 at 364.871 kb on - strand, within IAI47_01680 at 364.871 kb on - strand, within IAI47_01680 at 364.871 kb on - strand, within IAI47_01680 at 364.871 kb on - strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.875 kb on - strand, within IAI47_01680 at 364.875 kb on - strand, within IAI47_01680 at 364.918 kb on - strand, within IAI47_01680 at 364.918 kb on - strand, within IAI47_01680 at 364.923 kb on + strand, within IAI47_01680 at 364.923 kb on + strand, within IAI47_01680 at 364.923 kb on + strand, within IAI47_01680 at 364.923 kb on + strand, within IAI47_01680 at 364.931 kb on + strand, within IAI47_01680
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 361,928 + -0.1 361,938 + -1.9 361,954 + -1.1 361,954 + -0.6 361,954 + +1.2 361,954 + +0.5 361,955 - +0.2 361,955 - -0.2 361,955 - -1.2 361,955 - -0.7 361,972 + +0.8 361,972 + -1.8 361,972 + -0.2 361,972 + -2.2 361,972 + +0.3 361,972 + +1.0 361,972 + +0.8 361,972 + +0.5 361,973 - +0.1 361,973 - -0.2 361,973 - +0.1 361,974 + +0.8 361,974 + +0.4 361,974 + -1.2 361,975 - +0.2 361,975 - -2.8 361,975 - +0.8 361,975 - -0.2 361,975 - -0.2 361,975 - -0.8 361,976 + -0.6 361,976 + +0.9 361,977 - -0.2 361,977 - +0.0 361,977 - -0.9 361,977 - -0.9 361,977 - -1.8 361,980 + -0.7 361,980 + -0.7 361,980 + +1.9 361,981 - -0.2 361,983 + -0.2 361,984 - -1.2 361,987 - -0.5 362,014 + +0.6 362,014 + -0.0 362,014 + -0.7 362,014 + -0.5 362,058 - +0.8 362,058 - +0.0 362,058 - -2.2 362,077 + -0.0 362,077 + +1.2 362,077 + +0.7 362,077 + +0.2 362,077 + +0.3 362,078 - +0.8 362,078 - -0.2 362,078 - -1.3 362,078 - -0.1 362,089 + +0.4 362,129 + -0.6 362,129 + -0.1 362,129 + +0.8 362,129 + +1.0 362,130 - -1.6 362,130 - +0.2 362,130 - +0.0 362,130 - +1.2 362,130 - -0.7 362,136 + IAI47_01670 0.10 +0.2 362,136 + IAI47_01670 0.10 -0.9 362,137 - IAI47_01670 0.10 -0.6 362,137 - IAI47_01670 0.10 -0.2 362,175 - IAI47_01670 0.17 -0.7 362,175 - IAI47_01670 0.17 +1.2 362,175 - IAI47_01670 0.17 -1.1 362,175 - IAI47_01670 0.17 +0.3 362,175 - IAI47_01670 0.17 -0.1 362,278 + IAI47_01670 0.34 -0.7 362,279 - IAI47_01670 0.34 -0.4 362,279 - IAI47_01670 0.34 +0.1 362,374 - IAI47_01670 0.50 -1.8 362,417 + IAI47_01670 0.57 -0.5 362,417 + IAI47_01670 0.57 -0.1 362,551 - IAI47_01670 0.80 -0.2 362,551 - IAI47_01670 0.80 -0.2 362,586 + IAI47_01670 0.86 +1.5 362,586 + IAI47_01670 0.86 +1.6 362,586 + IAI47_01670 0.86 +1.1 362,597 + IAI47_01670 0.88 -0.3 362,597 + IAI47_01670 0.88 +0.5 362,598 - IAI47_01670 0.88 -0.2 362,628 - -0.9 362,628 - +1.4 362,628 - +1.2 362,631 + +0.1 362,631 + -0.7 362,631 + +0.6 362,632 - -1.4 362,632 - +0.0 362,632 - -2.2 362,632 - -0.0 362,632 - -0.3 362,640 + -0.2 362,640 + -0.3 362,640 + -0.6 362,640 + +0.4 362,640 + +0.5 362,641 - -0.8 362,641 - -0.8 362,641 - +0.1 362,641 - -2.2 362,641 - +0.8 362,641 - -0.2 362,643 + +1.0 362,643 + -1.9 362,644 - +1.0 362,644 - +0.8 362,644 - -0.0 362,644 - +0.1 362,676 + +0.1 362,706 + -0.7 362,706 + -0.2 362,706 + +1.3 362,706 + +0.6 362,706 + -0.4 362,706 + -1.2 362,707 - +0.3 362,707 - -0.5 362,707 - +1.1 362,707 - -0.6 362,707 - -1.6 362,709 + -0.9 362,709 + -0.1 362,709 + +0.1 362,709 + +3.3 362,709 + +0.8 362,710 - -0.1 362,713 + -1.0 362,714 - +0.4 362,745 - -0.1 362,793 + -2.1 362,793 + -1.6 362,793 + -1.6 362,793 + -1.1 362,794 - -2.8 362,794 - -4.0 362,794 - -1.2 362,794 - -1.6 362,794 - -2.2 362,794 - -0.5 362,800 + +2.2 362,803 + +0.1 362,803 + +1.3 362,803 + +0.1 362,803 + -0.4 362,803 + +0.4 362,803 + +0.4 362,826 + +0.6 362,864 + -0.2 362,864 + +1.2 362,864 + -1.6 362,864 + +0.8 362,864 + -0.2 362,864 + +1.2 363,986 + +1.2 363,986 + +0.2 363,986 + -1.2 363,986 + -1.6 363,986 + +0.5 363,994 + +0.2 363,994 + +0.0 363,994 + -0.8 363,995 - -2.7 364,004 + +0.3 364,004 + -0.1 364,004 + +1.1 364,004 + +0.1 364,004 + +0.8 364,004 + +0.1 364,004 + -0.9 364,004 + -1.2 364,004 + -0.7 364,004 + -0.1 364,004 + -0.8 364,005 - -0.7 364,005 - -0.9 364,005 - -0.6 364,005 - +0.8 364,005 - -0.6 364,005 - -0.8 364,048 + -0.2 364,062 + +1.0 364,062 + +0.2 364,062 + -1.6 364,063 - +3.1 364,063 - -1.2 364,075 - +0.8 364,116 + -0.2 364,116 + +0.5 364,117 - +0.8 364,117 - -0.8 364,117 - -0.2 364,125 + +0.0 364,125 + +0.2 364,125 + +0.8 364,125 + +1.4 364,126 - -0.8 364,126 - +0.0 364,126 - +0.9 364,154 + -1.9 364,154 + +0.8 364,154 + -0.8 364,155 - -0.2 364,155 - +0.3 364,155 - -0.1 364,155 - -0.2 364,155 - +0.8 364,155 - +2.2 364,161 + -0.8 364,161 + -1.5 364,162 - -0.5 364,162 - +1.1 364,162 - -0.0 364,162 - +2.3 364,162 - -0.4 364,181 + -0.8 364,181 + +1.1 364,181 + -0.5 364,202 + +0.2 364,202 + -3.2 364,202 + -0.5 364,215 + +0.8 364,253 + -0.2 364,253 + +1.1 364,254 - +0.5 364,266 + -0.2 364,266 + -1.1 364,266 + -0.7 364,266 + -0.4 364,266 + +0.4 364,266 + -1.1 364,266 + -0.5 364,266 + -2.3 364,266 + +0.8 364,266 + -0.1 364,266 + -0.4 364,266 + +0.9 364,266 + -0.6 364,267 - +0.1 364,267 - -0.0 364,267 - -0.2 364,267 - +1.0 364,267 - -0.2 364,267 - -2.1 364,267 - +0.3 364,267 - -0.4 364,267 - +0.0 364,267 - +0.5 364,267 - +1.1 364,267 - +0.1 364,267 - +1.5 364,270 + +0.8 364,270 + -0.8 364,270 + -0.7 364,270 + -0.0 364,270 + +1.8 364,270 + +0.8 364,270 + +1.4 364,270 + +0.5 364,270 + +0.5 364,270 + +0.4 364,271 - +0.1 364,271 - -0.3 364,271 - +2.6 364,311 + -0.1 364,311 + -0.8 364,311 + -1.0 364,312 - +0.5 364,312 - +0.8 364,338 + -0.1 364,339 - +1.0 364,339 - +0.9 364,403 + +0.8 364,403 + -0.1 364,407 + +0.6 364,407 + +0.8 364,408 - +0.6 364,426 + +1.1 364,427 - +1.1 364,429 + -0.6 364,429 + +0.7 364,429 + +1.8 364,430 - -0.2 364,430 - -1.2 364,520 + +0.4 364,650 + IAI47_01680 0.13 +1.1 364,651 - IAI47_01680 0.14 -0.6 364,651 - IAI47_01680 0.14 +0.5 364,651 - IAI47_01680 0.14 +0.6 364,870 + IAI47_01680 0.24 +1.5 364,870 + IAI47_01680 0.24 -0.3 364,870 + IAI47_01680 0.24 -0.1 364,871 - IAI47_01680 0.24 +1.9 364,871 - IAI47_01680 0.24 -0.5 364,871 - IAI47_01680 0.24 +0.3 364,871 - IAI47_01680 0.24 -1.8 364,874 + IAI47_01680 0.24 +0.8 364,874 + IAI47_01680 0.24 +0.3 364,874 + IAI47_01680 0.24 +2.1 364,874 + IAI47_01680 0.24 +0.3 364,874 + IAI47_01680 0.24 -0.0 364,874 + IAI47_01680 0.24 +0.2 364,874 + IAI47_01680 0.24 -0.5 364,875 - IAI47_01680 0.24 +1.6 364,875 - IAI47_01680 0.24 +1.8 364,918 - IAI47_01680 0.26 -0.8 364,918 - IAI47_01680 0.26 -0.7 364,923 + IAI47_01680 0.26 -0.1 364,923 + IAI47_01680 0.26 -0.1 364,923 + IAI47_01680 0.26 +1.0 364,923 + IAI47_01680 0.26 +0.4 364,931 + IAI47_01680 0.26 -0.3
Or see this region's nucleotide sequence