Strain Fitness in Pantoea sp. MT58 around IAI47_17130

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
3,629,832	-				-0.2
3,629,832	-				+2.4
3,629,836	-				+0.6
3,629,836	-				-0.2
3,629,836	-				-0.1
3,629,900	-				-1.8
3,629,927	-		IAI47_17120	0.17	+0.0
3,629,927	-		IAI47_17120	0.17	-1.0
3,629,928	+		IAI47_17120	0.18	+0.8
3,629,928	+		IAI47_17120	0.18	+0.0
3,629,928	+		IAI47_17120	0.18	-0.8
3,629,929	-		IAI47_17120	0.18	-0.8
3,629,929	-		IAI47_17120	0.18	+0.8
3,629,939	-		IAI47_17120	0.22	-0.9
3,629,989	-		IAI47_17120	0.41	-1.2
3,630,093	-		IAI47_17120	0.82	+1.4
3,630,147	-				-1.2
3,630,157	-				+0.8
3,630,157	-				+0.5
3,630,157	-				-2.2
3,630,160	-				+0.5
3,630,160	-				+0.2
3,630,160	-				+1.5
3,630,160	-				+1.5
3,630,163	-				+3.4
3,630,163	-				-0.3
3,630,163	-				+1.5
3,630,163	-				+1.5
3,630,163	-				+0.5
3,630,163	-				+0.8
3,630,163	-				-0.6
3,630,177	-				-0.2
3,630,177	-				-0.1
3,630,177	-				+0.1
3,630,177	-				+0.8
3,630,177	-				-1.5
3,630,177	-				+1.1
3,630,177	-				-1.1
3,630,177	-				+0.3
3,630,177	-				+0.8
3,630,177	-				+0.8
3,630,177	-				+0.6
3,630,180	-				-0.3
3,630,180	-				-0.5
3,630,180	-				+0.0
3,630,180	-				+0.8
3,630,180	-				+0.2
3,630,180	-				+0.4
3,630,201	-				-3.0
3,630,201	-				-0.2
3,630,201	-				+0.0
3,630,201	-				+1.6
3,630,205	-				+0.2
3,630,235	+				-1.0
3,630,235	+				-0.4
3,630,235	+				+0.1
3,630,235	+				-0.4
3,630,235	+				+0.5
3,630,235	+				+0.8
3,630,235	+				-0.4
3,630,240	+				-0.7
3,630,240	+				-0.4
3,630,240	+				+0.6
3,630,240	+				+0.5
3,630,240	+				-1.0
3,630,240	+				+0.5
3,630,240	+				+0.3
3,630,240	+				+0.3
3,630,241	-				+0.2
3,630,241	-				-0.5
3,630,241	-				-0.5
3,630,241	-				-1.7
3,630,241	-				+0.4
3,630,241	-				+0.0
3,630,279	+				-0.0
3,630,279	+				+0.2
3,630,279	+				-0.2
3,630,279	+				-1.9
3,630,279	+				+1.8
3,630,279	+				+0.6
3,630,279	+				+0.3
3,630,279	+				+3.1
3,630,280	-				+0.3
3,630,296	+		IAI47_17125	0.14	-1.8
3,630,296	+		IAI47_17125	0.14	+0.8
3,630,296	+		IAI47_17125	0.14	+1.2
3,630,297	-		IAI47_17125	0.14	-0.5
3,630,297	-		IAI47_17125	0.14	-1.5
3,630,303	+		IAI47_17125	0.16	+0.2
3,630,304	-		IAI47_17125	0.17	+0.4
3,630,304	-		IAI47_17125	0.17	-0.2
3,630,337	-		IAI47_17125	0.27	+0.8
3,630,337	-		IAI47_17125	0.27	-0.6
3,630,349	+		IAI47_17125	0.31	-1.8
3,630,349	+		IAI47_17125	0.31	+0.1
3,630,350	-		IAI47_17125	0.32	+1.4
3,630,350	-		IAI47_17125	0.32	+0.2
3,630,351	+		IAI47_17125	0.32	+0.3
3,630,351	+		IAI47_17125	0.32	+1.0
3,630,351	+		IAI47_17125	0.32	+1.2
3,630,351	+		IAI47_17125	0.32	+1.3
3,630,351	+		IAI47_17125	0.32	-1.7
3,630,351	+		IAI47_17125	0.32	-0.5
3,630,351	+		IAI47_17125	0.32	-1.5
3,630,351	+		IAI47_17125	0.32	+0.4
3,630,352	-		IAI47_17125	0.32	-1.0
3,630,352	-		IAI47_17125	0.32	-1.2
3,630,352	-		IAI47_17125	0.32	+0.4
3,630,352	-		IAI47_17125	0.32	-0.8
3,630,352	-		IAI47_17125	0.32	-0.8
3,630,352	-		IAI47_17125	0.32	-0.4
3,630,352	-		IAI47_17125	0.32	-0.1
3,630,352	-		IAI47_17125	0.32	+1.3
3,630,435	+		IAI47_17125	0.59	-2.4
3,630,436	-		IAI47_17125	0.60	+0.3
3,630,436	-		IAI47_17125	0.60	-1.5
3,630,436	-		IAI47_17125	0.60	+0.6
3,630,436	-		IAI47_17125	0.60	-0.2
3,630,436	-		IAI47_17125	0.60	-0.2
3,630,438	+		IAI47_17125	0.60	+1.3
3,630,439	-		IAI47_17125	0.61	+0.0
3,630,439	-		IAI47_17125	0.61	+1.2
3,630,439	-		IAI47_17125	0.61	-1.5
3,630,439	-		IAI47_17125	0.61	-1.6
3,630,510	+		IAI47_17125	0.84	+0.4
3,630,510	+		IAI47_17125	0.84	+0.5
3,630,510	+		IAI47_17125	0.84	-0.0
3,630,511	-		IAI47_17125	0.84	-0.4
3,630,511	-		IAI47_17125	0.84	+0.9
3,630,511	-		IAI47_17125	0.84	+1.3
3,630,511	-		IAI47_17125	0.84	-1.2
3,630,511	-		IAI47_17125	0.84	+0.0
3,630,511	-		IAI47_17125	0.84	-0.1
3,630,514	+		IAI47_17125	0.85	+0.0
3,630,514	+		IAI47_17125	0.85	+1.6
3,630,514	+		IAI47_17125	0.85	-1.8
3,630,514	+		IAI47_17125	0.85	-0.2
3,630,514	+		IAI47_17125	0.85	-0.7
3,630,514	+		IAI47_17125	0.85	+0.5
3,630,514	+		IAI47_17125	0.85	+0.2
3,630,514	+		IAI47_17125	0.85	+1.0
3,630,515	-		IAI47_17125	0.86	+0.0
3,630,515	-		IAI47_17125	0.86	+0.9
3,630,517	+		IAI47_17125	0.86	-0.2
3,630,517	+		IAI47_17125	0.86	+0.2
3,630,518	-		IAI47_17125	0.87	+0.5
3,630,518	-		IAI47_17125	0.87	+0.3
3,630,518	-		IAI47_17125	0.87	+1.2
3,630,518	-		IAI47_17125	0.87	+2.2
3,630,518	-		IAI47_17125	0.87	+0.5
3,630,518	-		IAI47_17125	0.87	+0.8
3,630,518	-		IAI47_17125	0.87	+1.2
3,630,559	+				-0.4
3,630,559	+				-0.7
3,630,559	+				-0.5
3,630,559	+				+0.7
3,630,559	+				-1.5
3,630,559	+				-0.5
3,630,560	-				-0.4
3,630,560	-				-1.5
3,630,569	+				+1.4
3,630,626	+		IAI47_17130	0.11	+0.2
3,630,626	+		IAI47_17130	0.11	+0.2
3,630,626	+		IAI47_17130	0.11	-0.1
3,630,626	+		IAI47_17130	0.11	-0.6
3,630,626	+		IAI47_17130	0.11	-1.0
3,630,626	+		IAI47_17130	0.11	+0.4
3,630,627	-		IAI47_17130	0.11	+0.4
3,630,627	-		IAI47_17130	0.11	-0.4
3,630,627	-		IAI47_17130	0.11	-0.2
3,630,627	-		IAI47_17130	0.11	+1.5
3,630,627	-		IAI47_17130	0.11	+0.8
3,630,627	-		IAI47_17130	0.11	-0.2
3,630,627	-		IAI47_17130	0.11	-0.2
3,630,627	-		IAI47_17130	0.11	+0.8
3,630,635	+		IAI47_17130	0.12	-0.8
3,630,636	-		IAI47_17130	0.12	-0.2
3,630,636	-		IAI47_17130	0.12	-0.1
3,630,703	+		IAI47_17130	0.23	-1.0
3,630,703	+		IAI47_17130	0.23	-0.1
3,630,703	+		IAI47_17130	0.23	+0.6
3,630,703	+		IAI47_17130	0.23	-2.4
3,630,703	+		IAI47_17130	0.23	-0.4
3,630,703	+		IAI47_17130	0.23	-0.8
3,630,703	+		IAI47_17130	0.23	-1.2
3,630,704	-		IAI47_17130	0.23	+0.0
3,630,704	-		IAI47_17130	0.23	+0.9
3,630,704	-		IAI47_17130	0.23	-1.3
3,630,704	-		IAI47_17130	0.23	-1.4
3,630,704	-		IAI47_17130	0.23	+1.2
3,630,729	-		IAI47_17130	0.27	+0.2
3,630,729	-		IAI47_17130	0.27	-0.1
3,630,782	+		IAI47_17130	0.35	-0.7
3,630,782	+		IAI47_17130	0.35	-2.5
3,630,783	-		IAI47_17130	0.35	+0.6
3,630,859	+		IAI47_17130	0.47	-1.0
3,630,859	+		IAI47_17130	0.47	+1.1
3,630,859	+		IAI47_17130	0.47	-0.5
3,630,859	+		IAI47_17130	0.47	-1.6
3,630,859	+		IAI47_17130	0.47	+1.1
3,630,859	+		IAI47_17130	0.47	+1.1
3,630,860	-		IAI47_17130	0.47	+0.4
3,630,860	-		IAI47_17130	0.47	-1.5
3,630,860	-		IAI47_17130	0.47	+0.0
3,630,860	-		IAI47_17130	0.47	-0.3
3,630,860	-		IAI47_17130	0.47	+0.2
3,630,860	-		IAI47_17130	0.47	-0.4
3,630,860	-		IAI47_17130	0.47	+0.2
3,630,880	+		IAI47_17130	0.51	+0.0
3,630,880	+		IAI47_17130	0.51	+0.2
3,630,880	+		IAI47_17130	0.51	+0.4
3,630,881	-		IAI47_17130	0.51	-2.0
3,630,881	-		IAI47_17130	0.51	+1.0
3,630,881	-		IAI47_17130	0.51	+1.7
3,630,895	+		IAI47_17130	0.53	+0.8
3,630,896	-		IAI47_17130	0.53	+0.0
3,630,916	+		IAI47_17130	0.56	+0.1
3,630,917	-		IAI47_17130	0.56	-0.5
3,630,917	-		IAI47_17130	0.56	+0.5
3,630,949	+		IAI47_17130	0.61	+0.5
3,630,949	+		IAI47_17130	0.61	+1.5
3,630,949	+		IAI47_17130	0.61	+0.5
3,630,949	+		IAI47_17130	0.61	-0.2
3,630,949	+		IAI47_17130	0.61	+0.8
3,630,950	-		IAI47_17130	0.62	+0.2
3,630,952	+		IAI47_17130	0.62	+0.2
3,630,952	+		IAI47_17130	0.62	-0.9
3,630,952	+				+2.4
3,630,952	+		IAI47_17130	0.62	+0.1
3,630,953	-		IAI47_17130	0.62	+0.2
3,630,953	-		IAI47_17130	0.62	-0.5
3,630,953	-		IAI47_17130	0.62	-1.2
3,630,953	-		IAI47_17130	0.62	+0.8
3,630,953	-		IAI47_17130	0.62	+0.0
3,630,979	+		IAI47_17130	0.66	+2.4
3,630,979	+		IAI47_17130	0.66	-0.2
3,630,979	+		IAI47_17130	0.66	+0.4
3,630,980	-		IAI47_17130	0.66	-0.8
3,630,980	-		IAI47_17130	0.66	-1.0
3,630,983	+		IAI47_17130	0.67	+0.2
3,630,983	+		IAI47_17130	0.67	+0.9
3,630,984	-		IAI47_17130	0.67	+0.9
3,630,984	-		IAI47_17130	0.67	+0.5
3,630,984	-		IAI47_17130	0.67	-1.3
3,630,984	-		IAI47_17130	0.67	-1.7
3,630,984	-		IAI47_17130	0.67	-1.0
3,630,984	-		IAI47_17130	0.67	-0.2
3,630,994	+		IAI47_17130	0.69	+0.8
3,630,994	+		IAI47_17130	0.69	+0.1
3,630,994	+		IAI47_17130	0.69	-0.8
3,630,994	+		IAI47_17130	0.69	-0.6
3,630,994	+		IAI47_17130	0.69	+1.0
3,630,994	+		IAI47_17130	0.69	+1.8
3,630,994	+		IAI47_17130	0.69	-0.3
3,630,994	+		IAI47_17130	0.69	-0.1
3,630,994	+		IAI47_17130	0.69	-0.2
3,630,994	+		IAI47_17130	0.69	+0.9
3,630,995	-		IAI47_17130	0.69	+0.4
3,630,995	-		IAI47_17130	0.69	-1.4
3,630,995	-		IAI47_17130	0.69	+0.1
3,630,995	-		IAI47_17130	0.69	+1.6
3,630,995	-		IAI47_17130	0.69	+0.5
3,630,995	-		IAI47_17130	0.69	-1.1
3,630,995	-		IAI47_17130	0.69	+1.0
3,631,030	+		IAI47_17130	0.74	+0.1
3,631,030	+		IAI47_17130	0.74	-0.2
3,631,030	+		IAI47_17130	0.74	+0.4
3,631,030	+		IAI47_17130	0.74	-0.7
3,631,030	+		IAI47_17130	0.74	+0.3
3,631,030	+		IAI47_17130	0.74	+1.2
3,631,030	+		IAI47_17130	0.74	-0.5
3,631,111	+		IAI47_17130	0.87	-0.5
3,631,111	+		IAI47_17130	0.87	-1.3
3,631,112	-		IAI47_17130	0.87	+1.0
3,631,112	-		IAI47_17130	0.87	-0.7
3,631,112	-		IAI47_17130	0.87	-0.3
3,631,179	+				+0.3
3,631,180	-				-0.6
3,631,180	-				-2.1
3,631,180	-				+0.0
3,631,187	+				-0.1
3,631,187	+				-0.5
3,631,187	+				+0.2
3,631,188	-				-0.1
3,631,188	-				+1.3
3,631,188	-				-1.4
3,631,196	+				-0.3
3,631,196	+				-0.6
3,631,196	+				-0.2
3,631,197	-				+0.8
3,631,197	-				-0.2
3,631,197	-				+0.4
3,631,197	-				+0.4
3,631,197	-				-0.6
3,631,210	+				-0.3
3,631,210	+				-0.5
3,631,211	-				+1.6
3,631,211	-				+0.7
3,631,211	-				+0.8
3,631,295	+		IAI47_17135	0.16	+0.9
3,631,295	+		IAI47_17135	0.16	+0.7
3,631,295	+		IAI47_17135	0.16	+0.0
3,631,296	-		IAI47_17135	0.16	-0.9
3,631,296	-		IAI47_17135	0.16	+0.3
3,631,297	+		IAI47_17135	0.16	+0.0
3,631,297	+		IAI47_17135	0.16	-0.4
3,631,297	+		IAI47_17135	0.16	-0.3
3,631,298	-		IAI47_17135	0.16	-0.1
3,631,343	+		IAI47_17135	0.25	-0.5
3,631,343	+		IAI47_17135	0.25	-1.9
3,631,344	-		IAI47_17135	0.25	+0.4
3,631,344	-		IAI47_17135	0.25	+0.2
3,631,344	-		IAI47_17135	0.25	+0.6
3,631,356	-		IAI47_17135	0.27	-0.6
3,631,356	-		IAI47_17135	0.27	-0.4
3,631,404	+		IAI47_17135	0.36	-0.4
3,631,404	+		IAI47_17135	0.36	+0.9
3,631,445	+		IAI47_17135	0.43	+0.6
3,631,445	+		IAI47_17135	0.43	-0.5
3,631,445	+		IAI47_17135	0.43	+0.3
3,631,466	+		IAI47_17135	0.47	-0.6
3,631,467	-		IAI47_17135	0.47	-2.2
3,631,486	+		IAI47_17135	0.51	-0.2
3,631,486	+		IAI47_17135	0.51	+0.3
3,631,487	-		IAI47_17135	0.51	+1.5
3,631,487	-		IAI47_17135	0.51	+0.6
3,631,487	-		IAI47_17135	0.51	+0.8
3,631,542	+		IAI47_17135	0.61	+0.6
3,631,542	+		IAI47_17135	0.61	-1.0
3,631,542	+		IAI47_17135	0.61	-0.2
3,631,543	-		IAI47_17135	0.61	-1.2
3,631,610	+		IAI47_17135	0.73	+0.6
3,631,662	+		IAI47_17135	0.83	-0.2
3,631,663	-		IAI47_17135	0.83	-0.0
3,631,663	-		IAI47_17135	0.83	-1.1
3,631,709	+				+1.0
3,631,709	+				-0.2
3,631,709	+				-1.2
3,631,709	+				-0.8
3,631,709	+				+0.3
3,631,710	-				-0.6
3,631,716	-				-0.2
3,631,716	-				-0.6
3,631,822	+				+1.3
3,631,822	+				-1.4
3,631,822	+				+0.0
3,631,822	+				+0.2
3,631,822	+				+1.6
3,631,822	+				+1.0
3,631,822	+				-0.2
3,631,822	+				-0.0
3,631,822	+				+0.8
3,631,822	+				-0.4
3,631,822	+				+0.5
3,631,822	+				+0.2
3,631,822	+				-1.2
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3,631,823	-				-0.1
3,631,823	-				-0.7
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3,631,823	-				+0.6
3,631,823	-				+3.1
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3,631,823	-				-1.5
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3,631,825	+				-0.0
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3,631,877	+		IAI47_17140	0.15	+0.2
3,631,877	+		IAI47_17140	0.15	-0.1
3,631,885	-		IAI47_17140	0.16	+0.3
3,631,885	-		IAI47_17140	0.16	+1.4
3,631,885	-		IAI47_17140	0.16	+0.5
3,631,941	+		IAI47_17140	0.23	+1.4
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3,631,942	-		IAI47_17140	0.23	+0.8
3,631,977	+		IAI47_17140	0.28	+0.5
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3,631,977	+		IAI47_17140	0.28	-1.8
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3,631,978	-		IAI47_17140	0.28	-0.2
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3,632,044	-		IAI47_17140	0.36	+0.5
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3,632,086	-		IAI47_17140	0.42	-2.0
3,632,114	-		IAI47_17140	0.45	+2.8
3,632,148	+		IAI47_17140	0.50	+1.1