Strain Fitness in Pantoea sp. MT58 around IAI47_13905

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
2,943,997	+		IAI47_13900	0.56	-3.4
2,943,998	-		IAI47_13900	0.56	-2.7
2,944,012	+		IAI47_13900	0.57	-1.2
2,944,012	+		IAI47_13900	0.57	-0.8
2,944,013	-		IAI47_13900	0.57	-2.4
2,944,013	-		IAI47_13900	0.57	-2.8
2,944,026	+		IAI47_13900	0.58	-1.2
2,944,038	+		IAI47_13900	0.59	-2.7
2,944,048	+		IAI47_13900	0.59	-2.8
2,944,053	-		IAI47_13900	0.60	-3.1
2,944,083	+		IAI47_13900	0.61	-1.8
2,944,084	-		IAI47_13900	0.62	-1.2
2,944,130	-		IAI47_13900	0.64	-2.8
2,944,130	-		IAI47_13900	0.64	-4.3
2,944,135	+		IAI47_13900	0.65	-1.2
2,944,135	+		IAI47_13900	0.65	-2.7
2,944,136	-		IAI47_13900	0.65	-1.6
2,944,144	-		IAI47_13900	0.65	-2.8
2,944,144	-		IAI47_13900	0.65	-2.0
2,944,185	+		IAI47_13900	0.68	-0.2
2,944,203	+		IAI47_13900	0.69	-1.1
2,944,203	+		IAI47_13900	0.69	-2.8
2,944,203	+		IAI47_13900	0.69	-3.5
2,944,203	+		IAI47_13900	0.69	-4.2
2,944,203	+		IAI47_13900	0.69	-3.1
2,944,203	+		IAI47_13900	0.69	-2.6
2,944,203	+		IAI47_13900	0.69	-2.2
2,944,203	+		IAI47_13900	0.69	-1.2
2,944,204	-		IAI47_13900	0.69	-2.9
2,944,204	-		IAI47_13900	0.69	-0.8
2,944,204	-		IAI47_13900	0.69	-0.2
2,944,204	-		IAI47_13900	0.69	-2.0
2,944,204	-		IAI47_13900	0.69	-2.7
2,944,204	-		IAI47_13900	0.69	-2.2
2,944,204	-		IAI47_13900	0.69	-3.3
2,944,224	+		IAI47_13900	0.70	-0.8
2,944,224	+		IAI47_13900	0.70	-1.2
2,944,262	+		IAI47_13900	0.72	-5.1
2,944,262	+		IAI47_13900	0.72	-2.4
2,944,338	+		IAI47_13900	0.77	-3.3
2,944,378	+		IAI47_13900	0.79	-2.6
2,944,378	+		IAI47_13900	0.79	-2.4
2,944,379	-		IAI47_13900	0.79	-5.0
2,944,546	+		IAI47_13900	0.89	-3.1
2,944,546	+		IAI47_13900	0.89	-3.1
2,944,546	+		IAI47_13900	0.89	-3.3
2,944,546	+		IAI47_13900	0.89	-3.6
2,944,546	+		IAI47_13900	0.89	-2.4
2,944,547	-		IAI47_13900	0.89	-2.6
2,944,552	+		IAI47_13900	0.90	-2.7
2,944,552	+		IAI47_13900	0.90	-3.2
2,944,553	-		IAI47_13900	0.90	-4.6
2,944,553	-		IAI47_13900	0.90	-3.1
2,944,583	+				-2.9
2,944,665	+				-3.0
2,944,717	+				-2.6
2,944,717	+				-2.8
2,944,718	-				-1.2
2,944,718	-				+0.2
2,944,723	+				+0.8
2,944,723	+				-1.6
2,944,723	+				-1.8
2,944,723	+				-2.9
2,944,723	+				-0.8
2,944,723	+				-0.9
2,944,723	+				+1.2
2,944,723	+				-0.2
2,944,723	+				+0.8
2,944,724	-				+0.1
2,944,724	-				+0.8
2,944,778	+				+1.0
2,944,779	-				+0.4
2,944,786	+				+0.3
2,944,787	-				-0.7
2,944,787	-				+1.3
2,944,787	-				-0.9
2,944,787	-				+0.5
2,944,787	-				+0.0
2,944,787	-				-0.3
2,944,825	+				-0.2
2,944,825	+				-0.3
2,944,825	+				+1.8
2,944,826	-				-0.6
2,944,826	-				-1.4
2,944,826	-				-1.0
2,944,827	+				-0.6
2,944,827	+				-0.8
2,944,827	+				-0.8
2,944,827	+				+0.2
2,944,827	+				-0.8
2,944,827	+				-0.7
2,944,828	-				-0.8
2,944,828	-				+2.0
2,944,828	-				+1.3
2,944,847	+				+0.9
2,944,847	+				+0.4
2,944,848	-				-0.1
2,944,865	-				+0.4
2,945,155	+		IAI47_13915	0.24	-0.2
2,945,228	+				-0.2
2,945,228	+				-0.8
2,945,228	+				-1.0
2,945,414	+		IAI47_13925	0.88	-0.0
2,945,414	+		IAI47_13925	0.88	+0.2
2,945,414	+		IAI47_13925	0.88	+1.2
2,945,423	+				-0.7
2,945,423	+				+0.5
2,945,423	+				+0.8
2,945,425	+				-0.2
2,945,425	+				+1.8
2,945,425	+				-1.2
2,945,425	+				+0.8
2,945,425	+				+0.0
2,945,425	+				-0.3
2,945,425	+				+1.4
2,945,425	+				-0.2
2,945,425	+				-0.4
2,945,425	+				+0.4
2,945,425	+				-0.5
2,945,504	+				-1.9
2,945,504	+				-0.2
2,945,504	+				+0.5
2,945,504	+				+0.3
2,945,504	+				+0.6
2,945,504	+				+0.0
2,945,530	+				+0.6
2,945,569	+		IAI47_13935	0.48	+0.4
2,945,721	+				+0.4
2,945,721	+				-1.0
2,945,722	-				+0.8
2,945,722	-				+0.2
2,945,722	-				+0.8
2,945,723	+				+0.0
2,945,724	-				+0.5
2,945,742	-				-1.6