Strain Fitness in Pantoea sp. MT58 around IAI47_13745

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
2,909,052	-		IAI47_13740	0.41	-0.2
2,909,062	-		IAI47_13740	0.42	+1.8
2,909,209	-		IAI47_13740	0.54	-1.2
2,909,791	-				+1.3
2,909,791	-				-2.0
2,909,847	-				-0.2
2,909,847	-				-1.8
2,909,847	-				-1.6
2,909,847	-				-0.8
2,910,000	-				-3.3
2,910,226	-		IAI47_13745	0.16	-2.0
2,910,310	-		IAI47_13745	0.19	+0.8
2,910,310	-		IAI47_13745	0.19	-0.2
2,910,331	-		IAI47_13745	0.19	-1.8
2,910,456	+		IAI47_13745	0.24	+0.8
2,910,457	-		IAI47_13745	0.24	-0.8
2,910,457	-		IAI47_13745	0.24	-2.2
2,910,457	-		IAI47_13745	0.24	-3.4
2,910,670	-		IAI47_13745	0.32	+0.8
2,910,763	-		IAI47_13745	0.35	-0.8
2,910,763	-		IAI47_13745	0.35	-1.2
2,912,076	+		IAI47_13745	0.82	-1.6
2,912,077	-		IAI47_13745	0.82	-1.2
2,912,077	-		IAI47_13745	0.82	-0.2
2,912,077	-		IAI47_13745	0.82	-2.8
2,912,171	-		IAI47_13745	0.85	-0.2
2,912,525	-				-2.7
2,912,529	-				-1.8
2,912,604	-				+0.8
2,912,675	-				+0.8
2,912,675	-				-0.1
2,912,675	-				-0.4
2,912,720	-				+0.1
2,912,720	-				-0.2
2,912,729	-				-0.2
2,912,729	-				-0.7
2,912,729	-				-1.2
2,912,742	-				+0.1
2,912,789	+				-1.6
2,912,790	-				-0.0
2,912,790	-				+0.0
2,912,790	-				-0.5
2,912,790	-				-0.2
2,912,794	+				+0.8
2,912,795	-				-0.2
2,912,795	-				+0.5
2,912,795	-				+0.3
2,912,795	-				-2.8
2,913,063	-		IAI47_13750	0.38	-0.8
2,913,063	-		IAI47_13750	0.38	-1.8
2,913,070	+		IAI47_13750	0.39	-3.6
2,913,070	+		IAI47_13750	0.39	-1.2
2,913,070	+		IAI47_13750	0.39	-2.7
2,913,071	-		IAI47_13750	0.39	-0.2
2,913,071	-		IAI47_13750	0.39	-1.8
2,913,071	-		IAI47_13750	0.39	-0.8
2,913,071	-		IAI47_13750	0.39	-1.8
2,913,071	-		IAI47_13750	0.39	-0.8
2,913,071	-		IAI47_13750	0.39	-0.2
2,913,170	-		IAI47_13750	0.53	+0.8
2,913,179	-		IAI47_13750	0.54	-1.6
2,913,281	+		IAI47_13750	0.68	-2.2
2,913,282	-		IAI47_13750	0.68	-1.6
2,913,285	-		IAI47_13750	0.69	-2.4
2,913,442	+				-1.8
2,913,443	-				-2.0
2,913,443	-				-2.2
2,913,443	-				-0.8
2,913,443	-				-0.8
2,913,482	-				-2.8
2,913,526	-				-1.5
2,913,528	+				-2.4
2,913,532	+				-1.2
2,913,533	-				-2.4