Strain Fitness in Pantoea sp. MT58 around IAI47_11970

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
2,534,165	+				+0.5
2,534,165	+				+0.6
2,534,166	-				-0.5
2,534,176	+				+1.0
2,534,177	-				-0.9
2,534,196	+				+0.0
2,534,196	+				+0.4
2,534,196	+				-0.3
2,534,196	+				+0.1
2,534,197	-				+1.0
2,534,197	-				-0.3
2,534,197	-				+1.5
2,534,197	-				+0.1
2,534,197	-				+0.3
2,534,201	+				-0.0
2,534,201	+				-0.9
2,534,202	-				+0.1
2,534,203	+				-0.5
2,534,203	+				-1.0
2,534,203	+				+0.9
2,534,204	-				+0.3
2,534,204	-				-1.3
2,534,210	+				-0.1
2,534,211	-				+0.1
2,534,250	+				+1.7
2,534,250	+				-0.5
2,534,293	+		IAI47_11970	0.17	-0.2
2,534,294	-		IAI47_11970	0.17	+1.0
2,534,294	-		IAI47_11970	0.17	-0.4
2,534,320	+		IAI47_11970	0.30	+0.5
2,534,320	+		IAI47_11970	0.30	-0.4
2,534,357	+		IAI47_11970	0.47	+0.7
2,534,360	+		IAI47_11970	0.49	-0.4
2,534,360	+		IAI47_11970	0.49	+0.3
2,534,360	+		IAI47_11970	0.49	-0.9
2,534,360	+		IAI47_11970	0.49	-1.9
2,534,360	+		IAI47_11970	0.49	-0.9
2,534,360	+		IAI47_11970	0.49	-1.0
2,534,360	+		IAI47_11970	0.49	-0.5
2,534,361	-		IAI47_11970	0.49	+0.3
2,534,361	-		IAI47_11970	0.49	-0.9
2,534,361	-		IAI47_11970	0.49	-0.9
2,534,361	-		IAI47_11970	0.49	-0.2
2,534,361	-		IAI47_11970	0.49	+1.7
2,534,361	-		IAI47_11970	0.49	+1.3
2,534,365	-		IAI47_11970	0.51	+0.5
2,534,365	-		IAI47_11970	0.51	+0.6
2,534,365	-		IAI47_11970	0.51	-0.5
2,534,365	-		IAI47_11970	0.51	+1.0
2,534,365	-		IAI47_11970	0.51	+0.8
2,534,365	-		IAI47_11970	0.51	+1.4
2,534,365	-		IAI47_11970	0.51	-0.6
2,534,390	+		IAI47_11970	0.63	+0.4
2,534,390	+		IAI47_11970	0.63	-0.7
2,534,390	+		IAI47_11970	0.63	+1.1
2,534,390	+		IAI47_11970	0.63	+0.9
2,534,391	-		IAI47_11970	0.63	-1.9
2,534,409	+		IAI47_11970	0.72	+0.7
2,534,409	+		IAI47_11970	0.72	-0.0
2,534,410	-		IAI47_11970	0.72	+0.3
2,534,423	-		IAI47_11970	0.79	-0.7
2,534,423	-		IAI47_11970	0.79	+0.5
2,534,444	+		IAI47_11970	0.89	+2.0
2,534,444	+		IAI47_11970	0.89	+0.7
2,534,444	+		IAI47_11970	0.89	-0.5
2,534,445	-		IAI47_11970	0.89	+0.3
2,534,445	-		IAI47_11970	0.89	+0.2
2,534,445	-		IAI47_11970	0.89	+0.2
2,534,445	-		IAI47_11970	0.89	+0.8
2,534,445	-		IAI47_11970	0.89	+0.4
2,534,445	-		IAI47_11970	0.89	-0.5
2,534,465	+				+0.7
2,534,466	-				-1.0
2,534,478	+				-0.3
2,534,478	+				-0.3
2,534,494	+				+0.7
2,534,495	-				+0.7
2,534,495	-				+0.7
2,534,512	-				-0.2
2,534,535	+				+1.7
2,534,536	-				-0.9
2,534,575	-				-0.9
2,534,647	+				-0.0
2,534,647	+				+1.7
2,534,647	+				+1.1
2,534,647	+				+0.1
2,534,647	+				+0.5
2,534,647	+				+0.7
2,534,647	+				-0.2
2,534,647	+				+1.0
2,534,647	+				-0.4
2,534,647	+				-0.3
2,534,648	-				+0.6
2,534,648	-				-0.1
2,534,648	-				+0.7
2,534,648	-				-1.3
2,534,648	-				-0.4
2,534,648	-				+1.2
2,534,648	-				-1.2
2,534,648	-				-1.9
2,534,648	-				-0.1
2,534,648	-				-0.3
2,534,648	-				+0.1
2,534,648	-				-1.2
2,534,650	+				-0.4
2,534,650	+				+1.8
2,534,650	+				-0.3
2,534,651	-				-0.6
2,534,651	-				+0.5
2,534,651	-				-1.1
2,534,651	-				-1.0
2,534,651	-				+1.3
2,534,661	+				+1.2
2,534,661	+				-0.6
2,534,662	-				+0.0
2,534,662	-				+1.0
2,534,714	+				-0.6
2,534,715	-				+1.1
2,534,715	-				+0.2
2,534,715	-				-0.7
2,534,716	+				+0.5
2,534,717	-				-1.6
2,534,717	-				-0.3
2,534,717	-				-0.3
2,534,717	-				-0.2
2,534,761	+				-1.9
2,534,761	+				-0.2
2,534,761	+				+0.0
2,534,761	+				+0.1
2,534,763	+				+0.7
2,534,764	-				-1.1
2,534,764	-				-1.6
2,534,764	-				-0.5
2,534,830	+				+1.1
2,534,881	+				-0.2
2,534,927	+				-2.1
2,534,954	-				-0.6
2,534,956	+				-1.9
2,534,956	+				-1.4
2,534,957	-				-0.8
2,534,957	-				-0.4
2,534,957	-				+0.4
2,534,957	-				-1.1
2,534,957	-				-1.0
2,534,981	+				+1.4
2,534,981	+				+0.2
2,534,982	-				+0.4
2,534,982	-				-0.6
2,534,982	-				+0.2
2,535,179	+		IAI47_11975	0.14	+0.9
2,535,179	+		IAI47_11975	0.14	-0.4
2,535,179	+		IAI47_11975	0.14	+0.2
2,535,180	-		IAI47_11975	0.14	+1.1
2,535,180	-		IAI47_11975	0.14	+0.7
2,535,180	-		IAI47_11975	0.14	+0.2
2,535,233	+		IAI47_11975	0.16	+0.7
2,535,322	+		IAI47_11975	0.18	+1.2
2,535,364	+		IAI47_11975	0.19	-1.2
2,535,365	-		IAI47_11975	0.19	-1.5
2,535,365	-		IAI47_11975	0.19	+0.7
2,535,428	+		IAI47_11975	0.21	+0.7
2,535,428	+		IAI47_11975	0.21	+0.5
2,535,429	-		IAI47_11975	0.21	-0.2
2,535,438	+		IAI47_11975	0.22	-1.3
2,535,439	-		IAI47_11975	0.22	+1.7
2,535,439	-		IAI47_11975	0.22	-0.9
2,535,442	+		IAI47_11975	0.22	+0.7
2,535,442	+		IAI47_11975	0.22	-1.9
2,535,442	+		IAI47_11975	0.22	+0.2
2,535,443	-		IAI47_11975	0.22	+1.7
2,535,443	-		IAI47_11975	0.22	+0.2
2,535,443	-		IAI47_11975	0.22	+1.1
2,535,443	-		IAI47_11975	0.22	+0.4