Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_11945 and IAI47_11950 are separated by 479 nucleotides IAI47_11950 and IAI47_11955 are separated by 146 nucleotides
IAI47_11945: IAI47_11945 - peptidase T, at 2,528,179 to 2,529,408
_11945
IAI47_11950: IAI47_11950 - NAD-dependent protein deacylase, at 2,529,888 to 2,530,721
_11950
IAI47_11955: IAI47_11955 - lipoprotein-releasing ABC transporter permease subunit LolE, at 2,530,868 to 2,532,112
_11955
Position (kb)
2529
2530
2531 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2529.021 kb on + strand, within IAI47_11945 at 2529.021 kb on + strand, within IAI47_11945 at 2529.022 kb on - strand, within IAI47_11945 at 2529.050 kb on - strand, within IAI47_11945 at 2529.063 kb on + strand, within IAI47_11945 at 2529.063 kb on + strand, within IAI47_11945 at 2529.064 kb on - strand, within IAI47_11945 at 2529.090 kb on + strand, within IAI47_11945 at 2529.168 kb on + strand, within IAI47_11945 at 2529.168 kb on + strand, within IAI47_11945 at 2529.168 kb on + strand, within IAI47_11945 at 2529.168 kb on + strand, within IAI47_11945 at 2529.169 kb on - strand, within IAI47_11945 at 2529.169 kb on - strand, within IAI47_11945 at 2529.169 kb on - strand, within IAI47_11945 at 2529.169 kb on - strand, within IAI47_11945 at 2529.169 kb on - strand, within IAI47_11945 at 2529.183 kb on + strand, within IAI47_11945 at 2529.253 kb on + strand, within IAI47_11945 at 2529.354 kb on + strand at 2529.355 kb on - strand at 2529.377 kb on + strand at 2529.378 kb on - strand at 2529.378 kb on - strand at 2529.378 kb on - strand at 2529.382 kb on + strand at 2529.382 kb on + strand at 2529.383 kb on - strand at 2529.383 kb on - strand at 2529.383 kb on - strand at 2529.397 kb on + strand at 2529.397 kb on + strand at 2529.397 kb on + strand at 2529.398 kb on - strand at 2529.398 kb on - strand at 2529.398 kb on - strand at 2529.409 kb on - strand at 2529.420 kb on + strand at 2529.420 kb on + strand at 2529.420 kb on + strand at 2529.421 kb on - strand at 2529.439 kb on + strand at 2529.439 kb on + strand at 2529.440 kb on - strand at 2529.440 kb on - strand at 2529.440 kb on - strand at 2529.440 kb on - strand at 2529.440 kb on - strand at 2529.458 kb on + strand at 2529.460 kb on + strand at 2529.460 kb on + strand at 2529.460 kb on + strand at 2529.460 kb on + strand at 2529.461 kb on - strand at 2529.461 kb on - strand at 2529.461 kb on - strand at 2529.461 kb on - strand at 2529.471 kb on - strand at 2529.471 kb on - strand at 2529.492 kb on - strand at 2529.521 kb on + strand at 2529.521 kb on + strand at 2529.521 kb on + strand at 2529.521 kb on + strand at 2529.521 kb on + strand at 2529.521 kb on + strand at 2529.532 kb on + strand at 2529.532 kb on + strand at 2529.532 kb on + strand at 2529.533 kb on - strand at 2529.541 kb on + strand at 2529.542 kb on - strand at 2529.544 kb on + strand at 2529.544 kb on + strand at 2529.545 kb on - strand at 2529.561 kb on - strand at 2529.561 kb on - strand at 2529.561 kb on - strand at 2529.576 kb on - strand at 2529.576 kb on - strand at 2529.576 kb on - strand at 2529.578 kb on + strand at 2529.702 kb on - strand at 2529.706 kb on + strand at 2529.706 kb on + strand at 2529.706 kb on + strand at 2529.707 kb on - strand at 2529.707 kb on - strand at 2529.707 kb on - strand at 2529.771 kb on + strand at 2529.771 kb on + strand at 2529.771 kb on + strand at 2529.771 kb on + strand at 2529.772 kb on - strand at 2529.772 kb on - strand at 2529.772 kb on - strand at 2529.772 kb on - strand at 2529.858 kb on + strand at 2529.858 kb on + strand at 2529.875 kb on - strand at 2529.889 kb on + strand at 2529.889 kb on + strand at 2529.890 kb on - strand at 2529.890 kb on - strand at 2529.893 kb on + strand at 2529.893 kb on + strand at 2529.894 kb on - strand at 2529.894 kb on - strand at 2529.894 kb on - strand at 2529.894 kb on - strand at 2529.894 kb on - strand at 2529.894 kb on - strand at 2529.894 kb on - strand at 2529.894 kb on - strand at 2529.896 kb on - strand at 2529.896 kb on - strand at 2529.896 kb on - strand at 2529.896 kb on - strand at 2529.914 kb on + strand at 2529.914 kb on + strand at 2529.914 kb on + strand at 2529.914 kb on + strand at 2529.915 kb on - strand at 2529.915 kb on - strand at 2529.952 kb on + strand at 2529.952 kb on + strand at 2529.952 kb on + strand at 2529.952 kb on + strand at 2529.953 kb on - strand at 2529.953 kb on - strand at 2529.953 kb on - strand at 2529.953 kb on - strand at 2529.953 kb on - strand at 2530.010 kb on + strand, within IAI47_11950 at 2530.010 kb on + strand, within IAI47_11950 at 2530.011 kb on - strand, within IAI47_11950 at 2530.011 kb on - strand, within IAI47_11950 at 2530.085 kb on + strand, within IAI47_11950 at 2530.085 kb on + strand, within IAI47_11950 at 2530.085 kb on + strand, within IAI47_11950 at 2530.085 kb on - strand, within IAI47_11950 at 2530.086 kb on - strand, within IAI47_11950 at 2530.086 kb on - strand, within IAI47_11950 at 2530.086 kb on - strand, within IAI47_11950 at 2530.086 kb on - strand, within IAI47_11950 at 2530.090 kb on + strand, within IAI47_11950 at 2530.091 kb on - strand, within IAI47_11950 at 2530.115 kb on - strand, within IAI47_11950 at 2530.214 kb on + strand, within IAI47_11950 at 2530.215 kb on - strand, within IAI47_11950 at 2530.356 kb on + strand, within IAI47_11950 at 2530.419 kb on + strand, within IAI47_11950 at 2530.419 kb on + strand, within IAI47_11950 at 2530.419 kb on + strand, within IAI47_11950 at 2530.419 kb on + strand, within IAI47_11950 at 2530.419 kb on + strand, within IAI47_11950 at 2530.419 kb on + strand, within IAI47_11950 at 2530.419 kb on + strand, within IAI47_11950 at 2530.420 kb on - strand, within IAI47_11950 at 2530.440 kb on - strand, within IAI47_11950 at 2530.440 kb on - strand, within IAI47_11950 at 2530.441 kb on + strand, within IAI47_11950 at 2530.441 kb on + strand, within IAI47_11950 at 2530.441 kb on + strand, within IAI47_11950 at 2530.441 kb on + strand, within IAI47_11950 at 2530.441 kb on + strand, within IAI47_11950 at 2530.441 kb on + strand, within IAI47_11950 at 2530.441 kb on + strand, within IAI47_11950 at 2530.441 kb on + strand, within IAI47_11950 at 2530.442 kb on - strand, within IAI47_11950 at 2530.442 kb on - strand, within IAI47_11950 at 2530.442 kb on - strand, within IAI47_11950 at 2530.442 kb on - strand, within IAI47_11950 at 2530.490 kb on + strand, within IAI47_11950 at 2530.698 kb on + strand at 2530.715 kb on + strand at 2530.715 kb on + strand at 2530.715 kb on + strand at 2530.715 kb on + strand at 2530.715 kb on + strand at 2530.715 kb on + strand at 2530.716 kb on - strand at 2530.716 kb on - strand at 2530.787 kb on + strand at 2530.790 kb on + strand at 2530.791 kb on - strand at 2530.791 kb on - strand at 2530.791 kb on - strand at 2530.829 kb on - strand at 2530.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 2,529,021 + IAI47_11945 0.68 -0.2 2,529,021 + IAI47_11945 0.68 -0.5 2,529,022 - IAI47_11945 0.69 -0.2 2,529,050 - IAI47_11945 0.71 -1.2 2,529,063 + IAI47_11945 0.72 +0.7 2,529,063 + IAI47_11945 0.72 +1.0 2,529,064 - IAI47_11945 0.72 +0.1 2,529,090 + IAI47_11945 0.74 -1.6 2,529,168 + IAI47_11945 0.80 +0.2 2,529,168 + IAI47_11945 0.80 -0.3 2,529,168 + IAI47_11945 0.80 -0.1 2,529,168 + IAI47_11945 0.80 -0.9 2,529,169 - IAI47_11945 0.80 +0.9 2,529,169 - IAI47_11945 0.80 -1.3 2,529,169 - IAI47_11945 0.80 -0.3 2,529,169 - IAI47_11945 0.80 +0.4 2,529,169 - IAI47_11945 0.80 +1.1 2,529,183 + IAI47_11945 0.82 +1.0 2,529,253 + IAI47_11945 0.87 +1.2 2,529,354 + +0.2 2,529,355 - -1.6 2,529,377 + +0.8 2,529,378 - -0.9 2,529,378 - +0.4 2,529,378 - -0.3 2,529,382 + -0.4 2,529,382 + -0.7 2,529,383 - -0.1 2,529,383 - -0.2 2,529,383 - -2.9 2,529,397 + -1.3 2,529,397 + +0.4 2,529,397 + +1.3 2,529,398 - +1.3 2,529,398 - +0.1 2,529,398 - +0.7 2,529,409 - -1.0 2,529,420 + -2.1 2,529,420 + -1.0 2,529,420 + +0.0 2,529,421 - +0.7 2,529,439 + +0.3 2,529,439 + -0.7 2,529,440 - -0.9 2,529,440 - +0.3 2,529,440 - -0.1 2,529,440 - -0.0 2,529,440 - +0.6 2,529,458 + -1.1 2,529,460 + +1.7 2,529,460 + -0.3 2,529,460 + -0.1 2,529,460 + +1.3 2,529,461 - +0.4 2,529,461 - +2.2 2,529,461 - +0.3 2,529,461 - +0.4 2,529,471 - -0.3 2,529,471 - +0.3 2,529,492 - -0.0 2,529,521 + -1.2 2,529,521 + -0.6 2,529,521 + +0.0 2,529,521 + -0.8 2,529,521 + -0.6 2,529,521 + -0.2 2,529,532 + -0.1 2,529,532 + -0.6 2,529,532 + +0.4 2,529,533 - +1.2 2,529,541 + -0.9 2,529,542 - +0.8 2,529,544 + -1.1 2,529,544 + +2.3 2,529,545 - -0.6 2,529,561 - -0.2 2,529,561 - -0.7 2,529,561 - +0.3 2,529,576 - -0.2 2,529,576 - -2.2 2,529,576 - -1.0 2,529,578 + -0.6 2,529,702 - -1.3 2,529,706 + +0.6 2,529,706 + +0.1 2,529,706 + -0.6 2,529,707 - +0.4 2,529,707 - +1.1 2,529,707 - -0.0 2,529,771 + +0.7 2,529,771 + -1.2 2,529,771 + +1.1 2,529,771 + +0.7 2,529,772 - +0.7 2,529,772 - +0.7 2,529,772 - -0.6 2,529,772 - +1.1 2,529,858 + +0.7 2,529,858 + -1.6 2,529,875 - -1.4 2,529,889 + -0.0 2,529,889 + +1.7 2,529,890 - +0.7 2,529,890 - +0.1 2,529,893 + +0.2 2,529,893 + -0.7 2,529,894 - -0.0 2,529,894 - +0.3 2,529,894 - +0.2 2,529,894 - -0.2 2,529,894 - +0.2 2,529,894 - +0.2 2,529,894 - +0.3 2,529,894 - -1.6 2,529,896 - +0.3 2,529,896 - -0.2 2,529,896 - +0.5 2,529,896 - -0.2 2,529,914 + -0.3 2,529,914 + +0.1 2,529,914 + -0.5 2,529,914 + -0.2 2,529,915 - -0.1 2,529,915 - -0.3 2,529,952 + -0.2 2,529,952 + +0.3 2,529,952 + -1.9 2,529,952 + -0.1 2,529,953 - +1.7 2,529,953 - -0.8 2,529,953 - -0.6 2,529,953 - -0.5 2,529,953 - -1.6 2,530,010 + IAI47_11950 0.15 +1.0 2,530,010 + IAI47_11950 0.15 -0.1 2,530,011 - IAI47_11950 0.15 -0.9 2,530,011 - IAI47_11950 0.15 -0.9 2,530,085 + IAI47_11950 0.24 -1.0 2,530,085 + IAI47_11950 0.24 -0.5 2,530,085 + IAI47_11950 0.24 -0.9 2,530,085 - IAI47_11950 0.24 -0.7 2,530,086 - IAI47_11950 0.24 -1.1 2,530,086 - IAI47_11950 0.24 +0.5 2,530,086 - IAI47_11950 0.24 -0.1 2,530,086 - IAI47_11950 0.24 +0.7 2,530,090 + IAI47_11950 0.24 -0.4 2,530,091 - IAI47_11950 0.24 +0.7 2,530,115 - IAI47_11950 0.27 +0.4 2,530,214 + IAI47_11950 0.39 -2.4 2,530,215 - IAI47_11950 0.39 -0.3 2,530,356 + IAI47_11950 0.56 -1.1 2,530,419 + IAI47_11950 0.64 -0.6 2,530,419 + IAI47_11950 0.64 -0.3 2,530,419 + IAI47_11950 0.64 -1.8 2,530,419 + IAI47_11950 0.64 -0.8 2,530,419 + IAI47_11950 0.64 -1.6 2,530,419 + IAI47_11950 0.64 -0.4 2,530,419 + IAI47_11950 0.64 -2.6 2,530,420 - IAI47_11950 0.64 -1.0 2,530,440 - IAI47_11950 0.66 -0.8 2,530,440 - IAI47_11950 0.66 -1.3 2,530,441 + IAI47_11950 0.66 -1.3 2,530,441 + IAI47_11950 0.66 -0.6 2,530,441 + IAI47_11950 0.66 -0.3 2,530,441 + IAI47_11950 0.66 -2.3 2,530,441 + IAI47_11950 0.66 -1.4 2,530,441 + IAI47_11950 0.66 -0.5 2,530,441 + IAI47_11950 0.66 -2.0 2,530,441 + IAI47_11950 0.66 -0.5 2,530,442 - IAI47_11950 0.66 -1.8 2,530,442 - IAI47_11950 0.66 +0.7 2,530,442 - IAI47_11950 0.66 -3.1 2,530,442 - IAI47_11950 0.66 -2.6 2,530,490 + IAI47_11950 0.72 +0.7 2,530,698 + -0.9 2,530,715 + -1.1 2,530,715 + -0.5 2,530,715 + -1.3 2,530,715 + -0.6 2,530,715 + -0.7 2,530,715 + -0.6 2,530,716 - -1.3 2,530,716 - -0.5 2,530,787 + +0.3 2,530,790 + -0.5 2,530,791 - -0.6 2,530,791 - +0.6 2,530,791 - +0.7 2,530,829 - +0.1 2,530,881 - +0.4
Or see this region's nucleotide sequence