Strain Fitness in Pantoea sp. MT58 around IAI47_08770

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
1,851,464	+		IAI47_08760	0.88	+0.1
1,851,464	+		IAI47_08760	0.88	+1.7
1,851,464	+		IAI47_08760	0.88	+0.3
1,851,464	+		IAI47_08760	0.88	-0.3
1,851,465	-		IAI47_08760	0.88	+1.5
1,851,465	-		IAI47_08760	0.88	+0.4
1,851,465	-		IAI47_08760	0.88	+1.1
1,851,465	-		IAI47_08760	0.88	-2.4
1,851,506	+				+2.4
1,851,554	+				+0.2
1,851,555	-				-0.0
1,851,555	-				-1.6
1,851,558	-				-0.7
1,851,558	-				-1.4
1,851,639	+				-2.1
1,851,639	+				+0.7
1,851,640	-				-1.0
1,851,649	+				+0.1
1,851,650	-				-0.6
1,851,670	+		IAI47_08765	0.11	-0.0
1,851,670	+		IAI47_08765	0.11	-1.0
1,851,670	+		IAI47_08765	0.11	+0.7
1,851,670	+		IAI47_08765	0.11	+1.5
1,851,670	+		IAI47_08765	0.11	+0.3
1,851,671	-		IAI47_08765	0.11	-1.3
1,851,696	+		IAI47_08765	0.14	-0.4
1,851,696	+		IAI47_08765	0.14	+0.3
1,851,697	-		IAI47_08765	0.14	-0.6
1,851,726	-		IAI47_08765	0.18	+0.7
1,851,752	-		IAI47_08765	0.21	+0.5
1,851,752	-		IAI47_08765	0.21	-0.0
1,851,769	+		IAI47_08765	0.23	-0.1
1,851,769	+		IAI47_08765	0.23	-0.1
1,851,833	+		IAI47_08765	0.31	-0.3
1,851,863	+		IAI47_08765	0.35	-0.1
1,851,864	-		IAI47_08765	0.35	-0.7
1,851,864	-		IAI47_08765	0.35	-0.4
1,851,926	+		IAI47_08765	0.43	+0.7
1,851,932	+		IAI47_08765	0.44	+0.3
1,851,933	-		IAI47_08765	0.44	+0.7
1,851,989	+		IAI47_08765	0.51	-0.2
1,851,990	-		IAI47_08765	0.51	-0.3
1,852,007	+		IAI47_08765	0.53	+1.3
1,852,145	+		IAI47_08765	0.70	+1.0
1,852,145	+		IAI47_08765	0.70	+2.9
1,852,232	+		IAI47_08765	0.81	-1.3
1,852,232	+		IAI47_08765	0.81	-0.9
1,852,232	+		IAI47_08765	0.81	-0.3
1,852,232	+		IAI47_08765	0.81	-1.0
1,852,247	+		IAI47_08765	0.83	+0.2
1,852,274	+		IAI47_08765	0.86	-0.1
1,852,274	+		IAI47_08765	0.86	-1.3
1,852,275	-		IAI47_08765	0.87	-0.9
1,852,275	-		IAI47_08765	0.87	+0.3
1,852,275	-		IAI47_08765	0.87	+0.3
1,852,275	-		IAI47_08765	0.87	-1.1
1,852,375	-				+0.1
1,852,385	+				-0.7
1,852,385	+				+0.8
1,852,386	-				+0.7
1,852,386	-				+0.5
1,852,386	-				+1.5
1,852,386	-				-0.6
1,852,386	-				+0.4
1,852,386	-				-1.5
1,852,454	+				+0.6
1,852,523	+				-0.9
1,852,524	-				+0.4
1,852,524	-				-0.1
1,852,556	+		IAI47_08770	0.11	-0.5
1,852,557	-		IAI47_08770	0.12	-0.9
1,852,583	+		IAI47_08770	0.14	+0.7
1,852,583	+		IAI47_08770	0.14	+0.3
1,852,583	+		IAI47_08770	0.14	+1.0
1,852,584	-		IAI47_08770	0.14	+0.3
1,852,584	-		IAI47_08770	0.14	-2.0
1,852,584	-		IAI47_08770	0.14	-0.0
1,852,638	-		IAI47_08770	0.20	-0.3
1,852,638	-		IAI47_08770	0.20	-0.3
1,852,640	+		IAI47_08770	0.20	+0.1
1,852,686	-		IAI47_08770	0.25	-1.2
1,852,686	-		IAI47_08770	0.25	+0.9
1,852,714	+		IAI47_08770	0.28	+0.1
1,852,714	+		IAI47_08770	0.28	+0.7
1,852,714	+		IAI47_08770	0.28	-0.1
1,852,714	+		IAI47_08770	0.28	+0.3
1,852,715	-		IAI47_08770	0.28	-0.5
1,852,715	-		IAI47_08770	0.28	+0.9
1,852,715	-		IAI47_08770	0.28	+0.1
1,852,715	-		IAI47_08770	0.28	+0.1
1,852,725	-		IAI47_08770	0.29	+0.7
1,852,745	+		IAI47_08770	0.31	+1.0
1,852,805	+		IAI47_08770	0.37	-0.7
1,852,805	+		IAI47_08770	0.37	+0.0
1,852,806	-		IAI47_08770	0.37	-0.0
1,852,806	-		IAI47_08770	0.37	-0.5
1,852,806	-		IAI47_08770	0.37	+0.4
1,852,845	-		IAI47_08770	0.41	+0.4
1,852,911	+		IAI47_08770	0.48	+0.6
1,852,911	+		IAI47_08770	0.48	-0.5
1,852,911	+		IAI47_08770	0.48	-1.3
1,852,911	+		IAI47_08770	0.48	-0.7
1,852,911	+		IAI47_08770	0.48	-0.9
1,852,911	+		IAI47_08770	0.48	-0.1
1,852,911	+		IAI47_08770	0.48	+1.6
1,852,912	-		IAI47_08770	0.48	-1.4
1,852,912	-		IAI47_08770	0.48	+0.2
1,852,912	-		IAI47_08770	0.48	-0.3
1,852,912	-		IAI47_08770	0.48	-1.1
1,852,912	-		IAI47_08770	0.48	-0.1
1,852,912	-		IAI47_08770	0.48	-0.3
1,852,986	+		IAI47_08770	0.56	-1.3
1,853,030	+		IAI47_08770	0.61	-0.1
1,853,031	-		IAI47_08770	0.61	+1.5
1,853,126	+		IAI47_08770	0.71	-0.1
1,853,149	+		IAI47_08770	0.73	+0.0
1,853,149	+		IAI47_08770	0.73	+0.1
1,853,149	+		IAI47_08770	0.73	-0.0
1,853,149	+		IAI47_08770	0.73	-1.6
1,853,150	-		IAI47_08770	0.73	+0.7
1,853,150	-		IAI47_08770	0.73	+1.0
1,853,160	-		IAI47_08770	0.74	-1.2
1,853,171	+		IAI47_08770	0.75	+0.1
1,853,187	-		IAI47_08770	0.77	+1.3
1,853,207	+		IAI47_08770	0.79	+2.3
1,853,208	-		IAI47_08770	0.79	+0.1
1,853,237	+		IAI47_08770	0.82	+0.6
1,853,237	+		IAI47_08770	0.82	-1.9
1,853,237	+		IAI47_08770	0.82	-0.2
1,853,261	+		IAI47_08770	0.85	-0.0
1,853,261	+		IAI47_08770	0.85	+0.9
1,853,261	+		IAI47_08770	0.85	+1.1
1,853,262	-		IAI47_08770	0.85	+0.4
1,853,262	-		IAI47_08770	0.85	-0.4
1,853,262	-		IAI47_08770	0.85	+0.1
1,853,262	-		IAI47_08770	0.85	-0.5
1,853,263	+		IAI47_08770	0.85	+0.7
1,853,264	-		IAI47_08770	0.85	-0.9
1,853,264	-		IAI47_08770	0.85	+0.4
1,853,384	+				-0.1
1,853,391	+				-0.0
1,853,391	+				-0.4
1,853,391	+				+0.1
1,853,391	+				-0.5
1,853,391	+				-0.3
1,853,392	-				+0.1
1,853,392	-				+0.9
1,853,413	+				+0.5
1,853,414	-				+0.7
1,853,414	-				+0.4
1,853,455	+				-0.5
1,853,455	+				+1.7
1,853,455	+				+0.3
1,853,456	-				+0.6
1,853,456	-				-1.3
1,853,456	-				-0.3
1,853,456	-				+0.3
1,853,508	+				+1.2
1,853,529	+				+0.9
1,853,530	-				-1.3
1,853,530	-				-0.6
1,853,539	-				+0.2
1,853,546	+				+2.3
1,853,560	-				-1.3
1,853,584	+				+0.7
1,853,602	+				-1.9
1,853,602	+				+0.3
1,853,603	-				+0.3
1,853,635	+				+0.9
1,853,636	-				-0.9
1,853,636	-				+0.2
1,853,705	+				+0.1
1,853,706	-				-0.9
1,853,706	-				-1.1
1,853,706	-				+1.0
1,853,706	-				-0.1
1,853,710	+				-1.1
1,853,710	+				+0.6
1,853,722	+				-1.0
1,853,723	-				+1.0
1,853,725	+				-0.3
1,853,736	-				+0.5
1,853,756	+				-0.0
1,853,756	+				+0.5
1,853,875	+				-1.2
1,853,875	+				-1.1
1,853,912	+				-0.6
1,853,912	+				+0.1
1,853,912	+				-0.5
1,853,913	-				-0.4
1,853,913	-				-1.1
1,853,955	+				-0.3
1,853,955	+				-0.9
1,853,983	-				-0.3
1,854,007	+				-1.0
1,854,008	-				-0.5
1,854,085	+		IAI47_08775	0.11	-2.0
1,854,085	+		IAI47_08775	0.11	+0.1
1,854,086	-		IAI47_08775	0.11	-1.2
1,854,086	-		IAI47_08775	0.11	-3.1
1,854,151	-		IAI47_08775	0.15	-0.3
1,854,180	+		IAI47_08775	0.17	-1.7
1,854,180	+		IAI47_08775	0.17	+0.2
1,854,180	+		IAI47_08775	0.17	+0.1
1,854,210	+		IAI47_08775	0.18	-1.2
1,854,210	+		IAI47_08775	0.18	-0.1
1,854,210	+		IAI47_08775	0.18	+0.2
1,854,211	-		IAI47_08775	0.19	+0.7
1,854,211	-		IAI47_08775	0.19	-0.4
1,854,215	-		IAI47_08775	0.19	-0.9
1,854,272	-		IAI47_08775	0.22	-0.9
1,854,360	+		IAI47_08775	0.28	+1.0
1,854,360	+		IAI47_08775	0.28	+1.3
1,854,360	+		IAI47_08775	0.28	+1.1
1,854,360	+		IAI47_08775	0.28	+1.6
1,854,360	+		IAI47_08775	0.28	-0.5
1,854,361	-		IAI47_08775	0.28	+0.3
1,854,364	+		IAI47_08775	0.28	-1.2
1,854,364	+		IAI47_08775	0.28	+0.3
1,854,364	+		IAI47_08775	0.28	+2.2
1,854,364	+		IAI47_08775	0.28	+0.1
1,854,365	-		IAI47_08775	0.28	-0.0