Strain Fitness in Pantoea sp. MT58 around IAI47_07660

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
1,621,775	+		IAI47_07655	0.56	-0.2
1,621,776	-		IAI47_07655	0.56	+0.1
1,621,777	+		IAI47_07655	0.56	-0.6
1,621,778	-		IAI47_07655	0.56	+1.8
1,621,778	-		IAI47_07655	0.56	-0.9
1,621,778	-		IAI47_07655	0.56	-0.1
1,621,843	+		IAI47_07655	0.59	+0.4
1,621,843	+		IAI47_07655	0.59	-0.9
1,621,843	+		IAI47_07655	0.59	-0.8
1,621,843	+		IAI47_07655	0.59	+0.7
1,621,844	-		IAI47_07655	0.60	+0.4
1,621,844	-		IAI47_07655	0.60	+1.3
1,621,874	-		IAI47_07655	0.61	+0.1
1,621,898	+		IAI47_07655	0.62	+0.3
1,621,898	+		IAI47_07655	0.62	+1.1
1,621,898	+		IAI47_07655	0.62	-0.5
1,621,898	+		IAI47_07655	0.62	-1.1
1,621,898	+		IAI47_07655	0.62	+0.3
1,621,899	-		IAI47_07655	0.62	+0.5
1,621,899	-		IAI47_07655	0.62	-0.2
1,621,899	-		IAI47_07655	0.62	-0.6
1,621,899	-		IAI47_07655	0.62	+0.6
1,621,899	-		IAI47_07655	0.62	+0.4
1,622,038	+		IAI47_07655	0.69	+0.1
1,622,039	-		IAI47_07655	0.69	-1.3
1,622,061	+		IAI47_07655	0.70	-0.1
1,622,095	+		IAI47_07655	0.72	-0.2
1,622,142	+		IAI47_07655	0.74	+0.1
1,622,142	+		IAI47_07655	0.74	+0.5
1,622,142	+		IAI47_07655	0.74	-0.6
1,622,216	+		IAI47_07655	0.78	-0.8
1,622,217	-		IAI47_07655	0.78	-0.9
1,622,217	-		IAI47_07655	0.78	-0.9
1,622,218	+		IAI47_07655	0.78	-0.4
1,622,219	-		IAI47_07655	0.78	-1.0
1,622,219	-		IAI47_07655	0.78	-0.0
1,622,246	+		IAI47_07655	0.79	-1.6
1,622,247	-		IAI47_07655	0.79	-0.9
1,622,392	+		IAI47_07655	0.86	+0.4
1,622,538	+				+2.3
1,622,538	+				+0.3
1,622,539	-				+2.7
1,622,539	-				-0.2
1,622,539	-				+0.4
1,622,539	-				+0.3
1,622,539	-				-1.2
1,622,560	-				-0.5
1,622,560	-				+1.2
1,622,560	-				+0.2
1,622,641	+				-1.0
1,622,669	+				-0.1
1,622,669	+				+0.1
1,622,669	+				+1.3
1,622,669	+				-0.3
1,622,669	+				+0.9
1,622,669	+				-0.8
1,622,669	+				-0.1
1,622,669	+				-1.5
1,622,670	-				+0.0
1,622,670	-				+1.0
1,622,670	-				+0.8
1,622,670	-				-0.5
1,622,670	-				-0.7
1,622,670	-				-0.6
1,622,670	-				-0.3
1,622,670	-				-1.0
1,622,670	-				+0.1
1,622,690	+				+0.3
1,622,690	+				-1.1
1,622,690	+				-0.4
1,622,690	+				+0.0
1,622,691	-				-0.9
1,622,691	-				+0.2
1,622,691	-				+0.1
1,622,695	+				-1.4
1,622,695	+				-0.5
1,622,695	+				+2.3
1,622,695	+				+0.9
1,622,695	+				-1.1
1,622,696	-				+0.1
1,622,712	+				+0.7
1,622,712	+				+2.3
1,622,713	-				-0.7
1,622,713	-				+0.5
1,622,713	-				+0.0
1,622,744	+				-1.0
1,622,745	-				+0.8
1,622,757	-				+1.3
1,622,778	-				+0.6
1,622,862	+				-1.9
1,622,862	+				+0.2
1,622,862	+				+0.3
1,622,877	+		IAI47_07660	0.10	-0.2
1,622,877	+		IAI47_07660	0.10	-0.9
1,622,878	-		IAI47_07660	0.10	-0.9
1,622,888	-		IAI47_07660	0.11	+0.8
1,622,888	-		IAI47_07660	0.11	+0.5
1,622,908	-		IAI47_07660	0.12	+0.2
1,622,908	-		IAI47_07660	0.12	+1.7
1,622,930	+		IAI47_07660	0.13	+0.3
1,622,930	+		IAI47_07660	0.13	-2.6
1,622,930	+		IAI47_07660	0.13	+0.5
1,622,931	-		IAI47_07660	0.13	-0.1
1,622,931	-		IAI47_07660	0.13	-0.3
1,622,933	+		IAI47_07660	0.13	-1.1
1,622,934	-		IAI47_07660	0.13	+0.3
1,622,934	-		IAI47_07660	0.13	+0.4
1,622,934	-		IAI47_07660	0.13	-0.3
1,622,934	-		IAI47_07660	0.13	+0.1
1,622,934	-		IAI47_07660	0.13	-0.3
1,623,000	+		IAI47_07660	0.17	-0.9
1,623,000	+		IAI47_07660	0.17	-0.9
1,623,041	+		IAI47_07660	0.19	-1.9
1,623,041	+		IAI47_07660	0.19	-2.6
1,623,041	+		IAI47_07660	0.19	-0.7
1,623,042	-		IAI47_07660	0.19	-1.2
1,623,239	+		IAI47_07660	0.29	+2.2
1,623,239	+		IAI47_07660	0.29	+0.1
1,623,240	-		IAI47_07660	0.29	+2.6
1,623,240	-		IAI47_07660	0.29	+1.2
1,623,254	+		IAI47_07660	0.30	+0.2
1,623,254	+		IAI47_07660	0.30	+0.1
1,623,255	-		IAI47_07660	0.30	-0.6
1,623,255	-		IAI47_07660	0.30	-0.8
1,623,269	+		IAI47_07660	0.30	-1.4
1,623,269	+		IAI47_07660	0.30	-0.9
1,623,269	+		IAI47_07660	0.30	-2.2
1,623,270	-		IAI47_07660	0.30	-0.4
1,623,270	-		IAI47_07660	0.30	+0.3
1,623,298	+		IAI47_07660	0.32	+1.2
1,623,307	+		IAI47_07660	0.32	-0.1
1,623,307	+		IAI47_07660	0.32	-0.2
1,623,307	+		IAI47_07660	0.32	-0.5
1,623,308	-		IAI47_07660	0.32	-1.8
1,623,308	-		IAI47_07660	0.32	+1.1
1,623,308	-		IAI47_07660	0.32	-1.6
1,623,308	-		IAI47_07660	0.32	+0.6
1,623,308	-		IAI47_07660	0.32	-0.9
1,623,324	+		IAI47_07660	0.33	+0.5
1,623,350	+		IAI47_07660	0.35	+0.7
1,623,351	-		IAI47_07660	0.35	-1.0
1,623,351	-		IAI47_07660	0.35	-0.2
1,623,375	+		IAI47_07660	0.36	-1.0
1,623,390	+		IAI47_07660	0.37	+0.1
1,623,391	-		IAI47_07660	0.37	+0.9
1,623,391	-		IAI47_07660	0.37	-2.3
1,623,428	+		IAI47_07660	0.39	+1.0
1,623,437	+		IAI47_07660	0.39	-0.3
1,623,438	-		IAI47_07660	0.39	+0.1
1,623,474	+		IAI47_07660	0.41	+0.4
1,623,474	+		IAI47_07660	0.41	+0.4
1,623,564	+		IAI47_07660	0.45	-0.2
1,623,564	+		IAI47_07660	0.45	+1.1
1,623,564	+		IAI47_07660	0.45	-0.4
1,623,564	+		IAI47_07660	0.45	-0.4
1,623,564	+		IAI47_07660	0.45	-0.5
1,623,564	+		IAI47_07660	0.45	-1.3
1,623,564	+		IAI47_07660	0.45	-0.7
1,623,564	+		IAI47_07660	0.45	-2.3
1,623,564	+		IAI47_07660	0.45	+0.4
1,623,564	+		IAI47_07660	0.45	+0.4
1,623,564	+		IAI47_07660	0.45	+0.5
1,623,565	-		IAI47_07660	0.46	-1.2
1,623,565	-		IAI47_07660	0.46	-1.0
1,623,565	-		IAI47_07660	0.46	-1.3
1,623,565	-		IAI47_07660	0.46	-0.9
1,623,565	-		IAI47_07660	0.46	-1.0
1,623,565	-		IAI47_07660	0.46	-1.2
1,623,565	-		IAI47_07660	0.46	+0.1
1,623,565	-		IAI47_07660	0.46	+0.9
1,623,645	-		IAI47_07660	0.50	+1.0
1,623,776	+		IAI47_07660	0.56	-0.3
1,623,780	+		IAI47_07660	0.57	-0.1
1,623,860	+		IAI47_07660	0.61	-0.2
1,624,015	+		IAI47_07660	0.69	+0.1
1,624,134	+		IAI47_07660	0.75	-0.6
1,624,134	+		IAI47_07660	0.75	-1.6
1,624,134	+		IAI47_07660	0.75	-0.2
1,624,134	+		IAI47_07660	0.75	+0.0
1,624,135	-		IAI47_07660	0.75	-1.3
1,624,135	-		IAI47_07660	0.75	+0.7
1,624,135	-		IAI47_07660	0.75	-0.5
1,624,135	-		IAI47_07660	0.75	+0.7
1,624,139	-		IAI47_07660	0.75	-0.5
1,624,163	+		IAI47_07660	0.76	-0.9
1,624,186	+		IAI47_07660	0.77	-0.5
1,624,186	+		IAI47_07660	0.77	-0.3
1,624,186	+		IAI47_07660	0.77	+0.1
1,624,186	+		IAI47_07660	0.77	+0.3
1,624,186	+		IAI47_07660	0.77	+0.1
1,624,187	-		IAI47_07660	0.77	+0.1
1,624,187	-		IAI47_07660	0.77	+0.3
1,624,187	-		IAI47_07660	0.77	+0.2
1,624,187	-		IAI47_07660	0.77	+0.5
1,624,187	-		IAI47_07660	0.77	+0.4
1,624,299	+		IAI47_07660	0.83	+0.3
1,624,299	+		IAI47_07660	0.83	+1.7
1,624,329	+		IAI47_07660	0.85	-2.5
1,624,330	-		IAI47_07660	0.85	-0.5
1,624,330	-		IAI47_07660	0.85	+1.4
1,624,336	+		IAI47_07660	0.85	+1.0
1,624,336	+		IAI47_07660	0.85	-0.3
1,624,336	+		IAI47_07660	0.85	+0.5
1,624,337	-		IAI47_07660	0.85	-0.1
1,624,337	-		IAI47_07660	0.85	-0.7
1,624,558	+				-0.7
1,624,586	-				+1.2
1,624,586	-				+0.1
1,624,654	-				+0.7
1,624,654	-				-0.7
1,624,654	-				+2.0
1,624,654	-				+0.4
1,624,661	-				+1.5
1,624,675	+				-0.1
1,624,675	+				+1.7
1,624,676	-				-1.7
1,624,676	-				-0.9
1,624,676	-				+0.4
1,624,676	-				+0.1
1,624,756	+				-1.5
1,624,756	+				+0.7
1,624,756	+				-0.1
1,624,756	+				+0.4
1,624,757	-				-0.4
1,624,757	-				+0.1
1,624,757	-				+1.2
1,624,757	-				-0.0
1,624,757	-				-0.3
1,624,757	-				+0.3
1,624,757	-				-0.6
1,624,757	-				+1.3
1,624,757	-				-1.0
1,624,757	-				-0.8
1,624,757	-				+0.2
1,624,757	-				+2.7
1,624,757	-				+0.2
1,624,757	-				+0.0
1,624,757	-				-1.9
1,624,757	-				-0.9
1,624,757	-				+0.6
1,624,798	-				+0.7
1,624,869	+				+0.4
1,624,869	+				-0.4
1,624,869	+				+2.5
1,624,870	-				+0.0
1,624,870	-				+0.7
1,624,893	+		IAI47_07665	0.11	-0.1
1,624,893	+		IAI47_07665	0.11	-0.9
1,624,893	+		IAI47_07665	0.11	-0.0
1,624,894	-		IAI47_07665	0.11	+0.3
1,624,960	+		IAI47_07665	0.15	-0.1
1,624,960	+		IAI47_07665	0.15	+0.8
1,624,960	+		IAI47_07665	0.15	+0.3
1,624,961	-		IAI47_07665	0.15	+1.0
1,625,035	+		IAI47_07665	0.19	+3.9
1,625,079	+		IAI47_07665	0.22	+0.2
1,625,079	+		IAI47_07665	0.22	-0.3
1,625,079	+		IAI47_07665	0.22	+1.4
1,625,190	+		IAI47_07665	0.28	+0.9
1,625,191	-		IAI47_07665	0.28	+1.7
1,625,191	-		IAI47_07665	0.28	+0.7
1,625,191	-		IAI47_07665	0.28	-1.0
1,625,255	-		IAI47_07665	0.32	-1.0
1,625,278	+		IAI47_07665	0.33	+0.5
1,625,313	+		IAI47_07665	0.35	+2.0
1,625,314	-		IAI47_07665	0.35	+0.4
1,625,409	-		IAI47_07665	0.40	+0.7
1,625,409	-		IAI47_07665	0.40	-0.3
1,625,505	-		IAI47_07665	0.46	+1.4
1,625,597	+		IAI47_07665	0.51	-0.4
1,625,597	+		IAI47_07665	0.51	-2.3
1,625,597	+		IAI47_07665	0.51	+1.3
1,625,597	+		IAI47_07665	0.51	+0.7
1,625,598	-		IAI47_07665	0.51	+1.5
1,625,598	-		IAI47_07665	0.51	-0.1