Strain Fitness in Pantoea sp. MT58 around IAI47_07640

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
1,616,956	+		IAI47_07635	0.25	+0.9
1,616,956	+		IAI47_07635	0.25	-0.0
1,616,956	+		IAI47_07635	0.25	-0.4
1,616,956	+		IAI47_07635	0.25	+0.4
1,616,956	+		IAI47_07635	0.25	-0.4
1,616,957	-		IAI47_07635	0.25	-0.5
1,616,957	-		IAI47_07635	0.25	+0.2
1,617,026	-		IAI47_07635	0.31	-0.9
1,617,026	-		IAI47_07635	0.31	-0.1
1,617,026	-		IAI47_07635	0.31	-0.5
1,617,113	+		IAI47_07635	0.39	+0.9
1,617,114	-		IAI47_07635	0.39	-2.1
1,617,114	-		IAI47_07635	0.39	+0.0
1,617,124	+		IAI47_07635	0.40	+0.1
1,617,124	+		IAI47_07635	0.40	-0.2
1,617,124	+		IAI47_07635	0.40	-0.0
1,617,124	+		IAI47_07635	0.40	+1.7
1,617,124	+		IAI47_07635	0.40	-0.3
1,617,124	+		IAI47_07635	0.40	-0.4
1,617,124	+		IAI47_07635	0.40	-2.0
1,617,125	-		IAI47_07635	0.40	+0.3
1,617,125	-		IAI47_07635	0.40	+0.4
1,617,125	-		IAI47_07635	0.40	-1.0
1,617,125	-		IAI47_07635	0.40	+3.2
1,617,253	+		IAI47_07635	0.51	+0.1
1,617,254	-		IAI47_07635	0.52	+0.2
1,617,254	-		IAI47_07635	0.52	+1.9
1,617,293	-		IAI47_07635	0.55	-0.3
1,617,436	+		IAI47_07635	0.68	+0.9
1,617,518	+		IAI47_07635	0.75	-0.7
1,617,521	+		IAI47_07635	0.75	+0.0
1,617,521	+		IAI47_07635	0.75	-1.3
1,617,522	-		IAI47_07635	0.75	+0.2
1,617,574	-		IAI47_07635	0.80	-2.8
1,617,640	+		IAI47_07635	0.86	-1.1
1,617,640	+		IAI47_07635	0.86	+0.3
1,617,641	-		IAI47_07635	0.86	-0.8
1,617,641	-		IAI47_07635	0.86	+0.5
1,617,641	-		IAI47_07635	0.86	+0.4
1,617,665	+		IAI47_07635	0.88	-1.1
1,617,665	+		IAI47_07635	0.88	-0.2
1,617,665	+		IAI47_07635	0.88	+0.3
1,617,666	-		IAI47_07635	0.88	-1.3
1,617,666	-		IAI47_07635	0.88	-0.5
1,617,713	+				+0.3
1,617,714	-				+1.9
1,617,748	+				+0.3
1,617,749	-				+2.1
1,617,846	-				+1.6
1,617,846	-				-0.3
1,617,855	+				-0.8
1,617,856	-				-1.9
1,617,856	-				+0.1
1,617,856	-				+0.2
1,617,876	+				+0.7
1,617,877	-				-0.5
1,617,877	-				-1.3
1,617,877	-				+1.3
1,617,896	+				-0.9
1,617,897	-				+0.7
1,617,912	+				+0.6
1,617,912	+				-0.4
1,617,913	-				+0.5
1,617,913	-				+0.5
1,617,946	+				-0.6
1,617,946	+				-1.8
1,617,946	+				+1.7
1,617,947	-				-1.6
1,617,947	-				+0.1
1,617,947	-				+1.0
1,617,947	-				-0.3
1,617,947	-				-0.3
1,617,955	-				+0.7
1,617,965	+				-0.7
1,617,965	+				+0.2
1,618,049	+		IAI47_07640	0.10	-0.3
1,618,049	+		IAI47_07640	0.10	+0.4
1,618,049	+		IAI47_07640	0.10	+0.1
1,618,050	-		IAI47_07640	0.10	+1.7
1,618,072	+		IAI47_07640	0.12	-0.1
1,618,201	+		IAI47_07640	0.22	+0.0
1,618,202	-		IAI47_07640	0.22	-0.8
1,618,368	+		IAI47_07640	0.34	-0.0
1,618,368	+		IAI47_07640	0.34	+0.4
1,618,395	+		IAI47_07640	0.36	+0.9
1,618,408	+		IAI47_07640	0.37	-0.1
1,618,409	-		IAI47_07640	0.37	+0.5
1,618,409	-		IAI47_07640	0.37	+0.9
1,618,409	-		IAI47_07640	0.37	+0.4
1,618,409	-		IAI47_07640	0.37	+0.5
1,618,409	-		IAI47_07640	0.37	+0.0
1,618,444	+		IAI47_07640	0.40	+1.2
1,618,444	+		IAI47_07640	0.40	-1.1
1,618,444	+		IAI47_07640	0.40	+0.1
1,618,444	+		IAI47_07640	0.40	-0.4
1,618,444	+		IAI47_07640	0.40	+0.4
1,618,444	+		IAI47_07640	0.40	+0.7
1,618,444	+		IAI47_07640	0.40	-0.4
1,618,445	-		IAI47_07640	0.40	+0.4
1,618,445	-		IAI47_07640	0.40	-0.0
1,618,445	-		IAI47_07640	0.40	+0.4
1,618,609	-		IAI47_07640	0.53	+0.1
1,618,626	+		IAI47_07640	0.54	-0.3
1,618,627	-		IAI47_07640	0.54	+0.9
1,618,627	-		IAI47_07640	0.54	+0.2
1,618,733	+		IAI47_07640	0.62	+0.5
1,618,733	+		IAI47_07640	0.62	+0.7
1,618,733	+		IAI47_07640	0.62	+0.5
1,618,734	-		IAI47_07640	0.62	-0.3
1,618,734	-		IAI47_07640	0.62	-1.1
1,618,737	+		IAI47_07640	0.62	-0.4
1,618,737	+		IAI47_07640	0.62	-0.5
1,618,737	+		IAI47_07640	0.62	+0.3
1,618,737	+		IAI47_07640	0.62	-0.0
1,618,837	+		IAI47_07640	0.70	+0.2
1,618,838	-		IAI47_07640	0.70	-1.2
1,618,907	+		IAI47_07640	0.75	-0.6
1,618,908	-		IAI47_07640	0.75	-0.2
1,618,969	+		IAI47_07640	0.80	+1.0
1,618,969	+		IAI47_07640	0.80	-0.5
1,618,969	+		IAI47_07640	0.80	+0.7
1,618,969	+		IAI47_07640	0.80	-0.2
1,618,969	+		IAI47_07640	0.80	-0.1
1,618,969	+		IAI47_07640	0.80	-0.8
1,618,970	-		IAI47_07640	0.80	-1.8
1,618,970	-		IAI47_07640	0.80	-0.6
1,618,970	-		IAI47_07640	0.80	-0.8
1,618,970	-		IAI47_07640	0.80	-1.6
1,618,970	-		IAI47_07640	0.80	-0.1
1,618,970	-		IAI47_07640	0.80	-1.7
1,618,970	-		IAI47_07640	0.80	-0.8
1,619,005	-		IAI47_07640	0.83	-0.6
1,619,005	-		IAI47_07640	0.83	+1.1
1,619,187	+				-0.3
1,619,187	+				+0.1
1,619,188	-				+0.4
1,619,188	-				-0.4
1,619,188	-				-0.7
1,619,196	+				+1.0
1,619,196	+				+1.2
1,619,257	+				-1.6
1,619,285	-				+0.2
1,619,285	-				+0.1
1,619,285	-				+2.9
1,619,285	-				+1.4
1,619,286	+				+0.4
1,619,287	-				-0.9
1,619,313	-				+0.2
1,619,317	+				-1.3
1,619,318	-				-0.6
1,619,327	+				+1.9
1,619,327	+				-0.1
1,619,327	+				+0.7
1,619,328	-				-0.7
1,619,328	-				+1.0
1,619,329	+				+0.4
1,619,329	+				-0.2
1,619,329	+				-3.1
1,619,330	-				+0.1
1,619,330	-				-2.5
1,619,358	-				-0.1
1,619,398	+				+1.7
1,619,398	+				-0.9
1,619,398	+				-0.9
1,619,398	+				-0.1
1,619,398	+				+0.9
1,619,398	+				+1.7
1,619,398	+				+0.7
1,619,398	+				+1.7
1,619,399	-				-0.5
1,619,399	-				-0.6
1,619,399	-				+1.2
1,619,554	+		IAI47_07645	0.30	+0.3
1,619,554	+		IAI47_07645	0.30	+0.5
1,619,555	-		IAI47_07645	0.31	+0.1
1,619,565	-		IAI47_07645	0.33	-0.6
1,619,565	-		IAI47_07645	0.33	+1.1
1,619,565	-		IAI47_07645	0.33	+2.0
1,619,578	+		IAI47_07645	0.35	-1.0
1,619,578	+		IAI47_07645	0.35	+2.3
1,619,578	+		IAI47_07645	0.35	+1.4
1,619,579	-		IAI47_07645	0.35	+0.2
1,619,579	-		IAI47_07645	0.35	+0.8
1,619,579	-				-0.1
1,619,579	-		IAI47_07645	0.35	-0.5
1,619,593	+		IAI47_07645	0.38	+1.1
1,619,653	+		IAI47_07645	0.50	-1.0
1,619,653	+		IAI47_07645	0.50	-0.3
1,619,654	-		IAI47_07645	0.50	+2.8
1,619,654	-		IAI47_07645	0.50	+0.5
1,619,654	-		IAI47_07645	0.50	+1.0
1,619,720	+		IAI47_07645	0.63	+1.1
1,619,726	+		IAI47_07645	0.64	-0.9
1,619,726	+		IAI47_07645	0.64	-0.6
1,619,726	+		IAI47_07645	0.64	-0.9
1,619,726	+		IAI47_07645	0.64	+0.3
1,619,726	+		IAI47_07645	0.64	+0.1
1,619,726	+		IAI47_07645	0.64	+0.2
1,619,726	+		IAI47_07645	0.64	+0.4
1,619,726	+		IAI47_07645	0.64	-0.1
1,619,726	+		IAI47_07645	0.64	-0.4
1,619,727	-		IAI47_07645	0.64	-0.9
1,619,727	-		IAI47_07645	0.64	+0.1
1,619,727	-		IAI47_07645	0.64	+0.7
1,619,727	-		IAI47_07645	0.64	+0.1
1,619,741	-		IAI47_07645	0.67	+0.4
1,619,762	+		IAI47_07645	0.71	-2.8
1,619,763	-		IAI47_07645	0.71	-2.0
1,619,763	-		IAI47_07645	0.71	+0.7
1,619,809	+		IAI47_07645	0.80	-0.9
1,619,810	-		IAI47_07645	0.81	+0.5
1,619,810	-		IAI47_07645	0.81	+2.1
1,619,810	-		IAI47_07645	0.81	+1.4
1,619,813	+		IAI47_07645	0.81	-0.0
1,619,813	+		IAI47_07645	0.81	+0.1
1,619,813	+		IAI47_07645	0.81	-0.2
1,619,813	+		IAI47_07645	0.81	-0.1
1,619,813	+		IAI47_07645	0.81	+1.6
1,619,814	-		IAI47_07645	0.81	+0.0
1,619,814	-		IAI47_07645	0.81	-0.6
1,619,814	-		IAI47_07645	0.81	+1.9
1,619,814	-		IAI47_07645	0.81	+0.7
1,619,822	+		IAI47_07645	0.83	+0.9
1,619,822	+		IAI47_07645	0.83	+0.3
1,619,822	+		IAI47_07645	0.83	-1.8
1,619,822	+		IAI47_07645	0.83	-0.9
1,619,823	-		IAI47_07645	0.83	+1.2
1,619,823	-		IAI47_07645	0.83	+0.7
1,619,824	+		IAI47_07645	0.83	+0.4
1,619,824	+		IAI47_07645	0.83	-0.3
1,619,825	-		IAI47_07645	0.84	+0.7
1,619,833	+		IAI47_07645	0.85	-0.8
1,619,833	+		IAI47_07645	0.85	-0.3
1,619,833	+		IAI47_07645	0.85	+0.2
1,619,865	+				+0.7
1,619,904	+				-1.4
1,619,904	+				+1.1
1,619,906	+				-1.0
1,619,906	+				+1.2
1,619,906	+				-0.2
1,619,906	+				+0.1
1,619,906	+				-1.0
1,619,907	-				+0.7
1,619,907	-				+0.5
1,619,907	-				+1.6
1,620,006	-				-0.6
1,620,011	+				+1.0
1,620,011	+				-1.9
1,620,011	+				-0.3
1,620,012	-				+1.9
1,620,012	-				-0.1
1,620,012	-				+1.0
1,620,014	-				-1.6
1,620,014	-				-0.6
1,620,022	-				+0.9
1,620,022	-				-0.5
1,620,022	-				+0.4
1,620,046	+				+0.1
1,620,046	+				-1.0
1,620,100	+				-1.0
1,620,101	-				+0.1
1,620,148	-				+1.2
1,620,148	-				-1.4
1,620,172	-				-1.6
1,620,172	-				+0.2
1,620,172	-				+0.9
1,620,172	-				+0.2
1,620,172	-				-0.1
1,620,202	+				-0.9
1,620,202	+				-0.4
1,620,202	+				+0.7
1,620,202	+				+1.2
1,620,203	-				+0.1
1,620,217	+		IAI47_07650	0.13	-0.3
1,620,218	-		IAI47_07650	0.13	+3.9
1,620,218	-		IAI47_07650	0.13	+0.7