Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02295 and IAI47_02300 overlap by 29 nucleotides IAI47_02300 and IAI47_02305 are separated by 24 nucleotides IAI47_02305 and IAI47_02310 are separated by 3 nucleotides IAI47_02310 and IAI47_02315 are separated by 3 nucleotides
IAI47_02295: IAI47_02295 - DNA-protecting protein DprA, at 475,703 to 476,827
_02295
IAI47_02300: IAI47_02300 - DUF494 domain-containing protein, at 476,799 to 477,272
_02300
IAI47_02305: IAI47_02305 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 477,297 to 477,845
_02305
IAI47_02310: IAI47_02310 - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 477,849 to 478,421
_02310
IAI47_02315: IAI47_02315 - shikimate dehydrogenase, at 478,425 to 479,243
_02315
Position (kb) 477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 476.341 kb on + strand, within IAI47_02295 at 476.341 kb on + strand, within IAI47_02295 at 476.341 kb on + strand, within IAI47_02295 at 476.342 kb on - strand, within IAI47_02295 at 476.376 kb on + strand, within IAI47_02295 at 476.376 kb on + strand, within IAI47_02295 at 476.376 kb on + strand, within IAI47_02295 at 476.376 kb on + strand, within IAI47_02295 at 476.376 kb on + strand, within IAI47_02295 at 476.376 kb on + strand, within IAI47_02295 at 476.376 kb on + strand, within IAI47_02295 at 476.377 kb on - strand, within IAI47_02295 at 476.377 kb on - strand, within IAI47_02295 at 476.418 kb on - strand, within IAI47_02295 at 476.418 kb on - strand, within IAI47_02295 at 476.444 kb on + strand, within IAI47_02295 at 476.444 kb on + strand, within IAI47_02295 at 476.444 kb on + strand, within IAI47_02295 at 476.444 kb on + strand, within IAI47_02295 at 476.444 kb on + strand, within IAI47_02295 at 476.444 kb on + strand, within IAI47_02295 at 476.445 kb on - strand, within IAI47_02295 at 476.445 kb on - strand, within IAI47_02295 at 476.445 kb on - strand, within IAI47_02295 at 476.445 kb on - strand, within IAI47_02295 at 476.445 kb on - strand, within IAI47_02295 at 476.445 kb on - strand, within IAI47_02295 at 476.445 kb on - strand, within IAI47_02295 at 476.451 kb on + strand, within IAI47_02295 at 476.452 kb on - strand, within IAI47_02295 at 476.452 kb on - strand, within IAI47_02295 at 476.452 kb on - strand, within IAI47_02295 at 476.452 kb on - strand, within IAI47_02295 at 476.452 kb on - strand, within IAI47_02295 at 476.489 kb on - strand, within IAI47_02295 at 476.534 kb on - strand, within IAI47_02295 at 476.534 kb on - strand, within IAI47_02295 at 476.648 kb on - strand, within IAI47_02295 at 476.652 kb on + strand, within IAI47_02295 at 476.652 kb on + strand, within IAI47_02295 at 476.652 kb on + strand, within IAI47_02295 at 476.652 kb on + strand, within IAI47_02295 at 476.652 kb on + strand, within IAI47_02295 at 476.652 kb on + strand, within IAI47_02295 at 476.652 kb on + strand, within IAI47_02295 at 476.652 kb on + strand, within IAI47_02295 at 476.652 kb on + strand, within IAI47_02295 at 476.652 kb on + strand, within IAI47_02295 at 476.653 kb on - strand, within IAI47_02295 at 476.653 kb on - strand, within IAI47_02295 at 476.653 kb on - strand, within IAI47_02295 at 476.653 kb on - strand, within IAI47_02295 at 476.653 kb on - strand, within IAI47_02295 at 476.653 kb on - strand, within IAI47_02295 at 476.653 kb on - strand, within IAI47_02295 at 476.653 kb on - strand, within IAI47_02295 at 476.665 kb on + strand, within IAI47_02295 at 476.665 kb on + strand, within IAI47_02295 at 476.665 kb on + strand, within IAI47_02295 at 476.665 kb on + strand, within IAI47_02295 at 476.665 kb on + strand, within IAI47_02295 at 476.665 kb on + strand, within IAI47_02295 at 476.666 kb on - strand, within IAI47_02295 at 476.666 kb on - strand, within IAI47_02295 at 476.666 kb on - strand, within IAI47_02295 at 476.666 kb on - strand, within IAI47_02295 at 476.713 kb on + strand, within IAI47_02295 at 476.713 kb on + strand, within IAI47_02295 at 476.713 kb on + strand, within IAI47_02295 at 476.714 kb on - strand, within IAI47_02295 at 476.714 kb on - strand, within IAI47_02295 at 476.743 kb on - strand at 476.743 kb on - strand at 476.774 kb on + strand at 476.775 kb on - strand at 476.775 kb on - strand at 476.809 kb on + strand at 476.809 kb on + strand at 476.809 kb on + strand at 476.809 kb on + strand at 476.809 kb on + strand at 476.810 kb on - strand at 476.810 kb on - strand at 476.810 kb on - strand at 476.810 kb on - strand at 476.817 kb on + strand at 476.817 kb on + strand at 476.818 kb on - strand at 476.818 kb on - strand at 476.818 kb on - strand at 476.818 kb on - strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.832 kb on + strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.833 kb on - strand at 476.834 kb on + strand at 476.834 kb on + strand at 476.834 kb on + strand at 476.834 kb on + strand at 476.834 kb on + strand at 476.834 kb on + strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.835 kb on - strand at 476.919 kb on + strand, within IAI47_02300 at 476.919 kb on + strand, within IAI47_02300 at 476.919 kb on + strand, within IAI47_02300 at 476.919 kb on + strand, within IAI47_02300 at 476.919 kb on + strand, within IAI47_02300 at 476.920 kb on - strand, within IAI47_02300 at 476.920 kb on - strand, within IAI47_02300 at 477.011 kb on + strand, within IAI47_02300 at 477.011 kb on + strand, within IAI47_02300 at 477.011 kb on + strand, within IAI47_02300 at 477.011 kb on + strand, within IAI47_02300 at 477.011 kb on + strand, within IAI47_02300 at 477.012 kb on - strand, within IAI47_02300 at 477.012 kb on - strand, within IAI47_02300 at 477.012 kb on - strand, within IAI47_02300 at 477.012 kb on - strand, within IAI47_02300 at 477.012 kb on - strand, within IAI47_02300 at 477.012 kb on - strand, within IAI47_02300 at 477.012 kb on - strand, within IAI47_02300 at 477.015 kb on + strand, within IAI47_02300 at 477.015 kb on + strand, within IAI47_02300 at 477.015 kb on + strand, within IAI47_02300 at 477.015 kb on + strand, within IAI47_02300 at 477.015 kb on + strand, within IAI47_02300 at 477.015 kb on + strand, within IAI47_02300 at 477.015 kb on + strand, within IAI47_02300 at 477.016 kb on - strand, within IAI47_02300 at 477.016 kb on - strand, within IAI47_02300 at 477.016 kb on - strand, within IAI47_02300 at 477.016 kb on - strand, within IAI47_02300 at 477.016 kb on - strand, within IAI47_02300 at 477.040 kb on + strand, within IAI47_02300 at 477.040 kb on + strand, within IAI47_02300 at 477.040 kb on + strand, within IAI47_02300 at 477.041 kb on - strand, within IAI47_02300 at 477.050 kb on + strand, within IAI47_02300 at 477.050 kb on + strand, within IAI47_02300 at 477.050 kb on + strand, within IAI47_02300 at 477.125 kb on + strand, within IAI47_02300 at 477.125 kb on + strand, within IAI47_02300 at 477.125 kb on + strand, within IAI47_02300 at 477.125 kb on + strand, within IAI47_02300 at 477.126 kb on - strand, within IAI47_02300 at 477.126 kb on - strand, within IAI47_02300 at 477.126 kb on - strand, within IAI47_02300 at 477.140 kb on + strand, within IAI47_02300 at 477.140 kb on + strand, within IAI47_02300 at 477.141 kb on - strand, within IAI47_02300 at 477.220 kb on - strand, within IAI47_02300 at 477.241 kb on + strand at 477.241 kb on + strand at 477.242 kb on - strand at 477.242 kb on - strand at 477.242 kb on - strand at 477.260 kb on + strand at 477.260 kb on + strand at 477.260 kb on + strand at 477.260 kb on + strand at 477.260 kb on + strand at 477.260 kb on + strand at 477.260 kb on + strand at 477.260 kb on + strand at 477.260 kb on + strand at 477.260 kb on + strand at 477.260 kb on + strand at 477.261 kb on - strand at 477.261 kb on - strand at 477.261 kb on - strand at 477.261 kb on - strand at 477.270 kb on + strand at 477.297 kb on - strand at 477.302 kb on + strand at 477.302 kb on + strand at 477.302 kb on + strand at 477.302 kb on + strand at 477.326 kb on + strand at 477.326 kb on + strand at 477.326 kb on + strand at 477.327 kb on - strand at 477.409 kb on - strand, within IAI47_02305 at 477.424 kb on - strand, within IAI47_02305 at 477.424 kb on - strand, within IAI47_02305 at 477.436 kb on + strand, within IAI47_02305 at 477.437 kb on - strand, within IAI47_02305 at 477.437 kb on - strand, within IAI47_02305 at 477.437 kb on - strand, within IAI47_02305 at 477.539 kb on + strand, within IAI47_02305 at 477.570 kb on + strand, within IAI47_02305 at 477.637 kb on + strand, within IAI47_02305 at 477.637 kb on + strand, within IAI47_02305 at 477.637 kb on + strand, within IAI47_02305 at 477.741 kb on + strand, within IAI47_02305 at 477.741 kb on + strand, within IAI47_02305 at 477.742 kb on - strand, within IAI47_02305 at 477.742 kb on - strand, within IAI47_02305 at 477.742 kb on - strand, within IAI47_02305 at 477.760 kb on + strand, within IAI47_02305 at 477.761 kb on - strand, within IAI47_02305 at 477.788 kb on + strand, within IAI47_02305 at 477.788 kb on + strand, within IAI47_02305 at 477.806 kb on + strand at 477.806 kb on + strand at 477.806 kb on + strand at 477.843 kb on + strand at 477.843 kb on + strand at 477.843 kb on + strand at 477.843 kb on + strand at 478.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 476,341 + IAI47_02295 0.57 -0.5 476,341 + IAI47_02295 0.57 -1.1 476,341 + IAI47_02295 0.57 +0.2 476,342 - IAI47_02295 0.57 -2.4 476,376 + IAI47_02295 0.60 -1.2 476,376 + IAI47_02295 0.60 +1.4 476,376 + IAI47_02295 0.60 -0.2 476,376 + IAI47_02295 0.60 -0.8 476,376 + IAI47_02295 0.60 -0.5 476,376 + IAI47_02295 0.60 -0.5 476,376 + IAI47_02295 0.60 +0.3 476,377 - IAI47_02295 0.60 -0.5 476,377 - IAI47_02295 0.60 +0.4 476,418 - IAI47_02295 0.64 +0.4 476,418 - IAI47_02295 0.64 -0.8 476,444 + IAI47_02295 0.66 +0.1 476,444 + IAI47_02295 0.66 -1.0 476,444 + IAI47_02295 0.66 -0.8 476,444 + IAI47_02295 0.66 -1.8 476,444 + IAI47_02295 0.66 -0.2 476,444 + IAI47_02295 0.66 -0.5 476,445 - IAI47_02295 0.66 -0.5 476,445 - IAI47_02295 0.66 +0.0 476,445 - IAI47_02295 0.66 -0.0 476,445 - IAI47_02295 0.66 -0.8 476,445 - IAI47_02295 0.66 +2.7 476,445 - IAI47_02295 0.66 +0.4 476,445 - IAI47_02295 0.66 +0.4 476,451 + IAI47_02295 0.66 +0.2 476,452 - IAI47_02295 0.67 -0.2 476,452 - IAI47_02295 0.67 +0.0 476,452 - IAI47_02295 0.67 -0.8 476,452 - IAI47_02295 0.67 +1.5 476,452 - IAI47_02295 0.67 +1.4 476,489 - IAI47_02295 0.70 +2.4 476,534 - IAI47_02295 0.74 +0.4 476,534 - IAI47_02295 0.74 +0.0 476,648 - IAI47_02295 0.84 -0.2 476,652 + IAI47_02295 0.84 -0.2 476,652 + IAI47_02295 0.84 -0.0 476,652 + IAI47_02295 0.84 -1.8 476,652 + IAI47_02295 0.84 +1.8 476,652 + IAI47_02295 0.84 -0.3 476,652 + IAI47_02295 0.84 -0.2 476,652 + IAI47_02295 0.84 -0.5 476,652 + IAI47_02295 0.84 -2.5 476,652 + IAI47_02295 0.84 -0.7 476,652 + IAI47_02295 0.84 +0.8 476,653 - IAI47_02295 0.84 +0.2 476,653 - IAI47_02295 0.84 -1.0 476,653 - IAI47_02295 0.84 -1.2 476,653 - IAI47_02295 0.84 +0.0 476,653 - IAI47_02295 0.84 +2.4 476,653 - IAI47_02295 0.84 +1.2 476,653 - IAI47_02295 0.84 -1.2 476,653 - IAI47_02295 0.84 +2.1 476,665 + IAI47_02295 0.86 -0.2 476,665 + IAI47_02295 0.86 -1.1 476,665 + IAI47_02295 0.86 +1.8 476,665 + IAI47_02295 0.86 +0.4 476,665 + IAI47_02295 0.86 -0.1 476,665 + IAI47_02295 0.86 +0.9 476,666 - IAI47_02295 0.86 -0.1 476,666 - IAI47_02295 0.86 -1.5 476,666 - IAI47_02295 0.86 -1.5 476,666 - IAI47_02295 0.86 +0.5 476,713 + IAI47_02295 0.90 +1.8 476,713 + IAI47_02295 0.90 +0.6 476,713 + IAI47_02295 0.90 -0.5 476,714 - IAI47_02295 0.90 -0.4 476,714 - IAI47_02295 0.90 -0.7 476,743 - +0.7 476,743 - +0.5 476,774 + -0.2 476,775 - -0.5 476,775 - +1.5 476,809 + -0.4 476,809 + -0.1 476,809 + +1.2 476,809 + +0.4 476,809 + -0.4 476,810 - -0.3 476,810 - -0.0 476,810 - -0.3 476,810 - +0.4 476,817 + -0.2 476,817 + +0.0 476,818 - -1.2 476,818 - +1.2 476,818 - +0.7 476,818 - -0.0 476,832 + +1.2 476,832 + -1.5 476,832 + +0.4 476,832 + +2.2 476,832 + +0.6 476,832 + -1.5 476,832 + +2.2 476,832 + -1.5 476,832 + -0.3 476,832 + -0.7 476,832 + -2.2 476,832 + -0.5 476,832 + -0.7 476,832 + +1.3 476,832 + +0.3 476,832 + -0.0 476,832 + +0.5 476,832 + +0.1 476,832 + +1.6 476,832 + +0.6 476,832 + -0.1 476,832 + -0.1 476,832 + +1.0 476,832 + -2.1 476,832 + -0.1 476,832 + +0.8 476,832 + -3.3 476,832 + -0.5 476,832 + -1.2 476,832 + +0.1 476,832 + +0.8 476,833 - -0.2 476,833 - +0.0 476,833 - +1.8 476,833 - -1.9 476,833 - +1.2 476,833 - +0.3 476,833 - -0.2 476,833 - -0.5 476,833 - -0.5 476,833 - -0.6 476,833 - -0.8 476,833 - +0.1 476,833 - -1.2 476,833 - -0.4 476,833 - +0.3 476,833 - -1.7 476,833 - -0.1 476,833 - -0.2 476,833 - +1.0 476,833 - -0.2 476,833 - +1.2 476,833 - -1.1 476,833 - -1.4 476,833 - +0.6 476,833 - -0.7 476,833 - +0.6 476,833 - +0.0 476,833 - -1.2 476,834 + -0.8 476,834 + -0.0 476,834 + +0.9 476,834 + +0.5 476,834 + -0.8 476,834 + +0.6 476,835 - -0.1 476,835 - +0.8 476,835 - -2.2 476,835 - +0.6 476,835 - -0.8 476,835 - +0.0 476,835 - -1.4 476,835 - +0.3 476,835 - +0.0 476,835 - -2.0 476,835 - -0.8 476,835 - -0.4 476,835 - -0.4 476,835 - +0.5 476,919 + IAI47_02300 0.25 +0.5 476,919 + IAI47_02300 0.25 -1.2 476,919 + IAI47_02300 0.25 -0.3 476,919 + IAI47_02300 0.25 -0.4 476,919 + IAI47_02300 0.25 -0.2 476,920 - IAI47_02300 0.26 -0.8 476,920 - IAI47_02300 0.26 -0.1 477,011 + IAI47_02300 0.45 -0.6 477,011 + IAI47_02300 0.45 -0.6 477,011 + IAI47_02300 0.45 -0.2 477,011 + IAI47_02300 0.45 -0.3 477,011 + IAI47_02300 0.45 -0.3 477,012 - IAI47_02300 0.45 -1.5 477,012 - IAI47_02300 0.45 +1.2 477,012 - IAI47_02300 0.45 -1.7 477,012 - IAI47_02300 0.45 +0.8 477,012 - IAI47_02300 0.45 +0.8 477,012 - IAI47_02300 0.45 +0.2 477,012 - IAI47_02300 0.45 +0.2 477,015 + IAI47_02300 0.46 +0.6 477,015 + IAI47_02300 0.46 -2.1 477,015 + IAI47_02300 0.46 +0.6 477,015 + IAI47_02300 0.46 -1.5 477,015 + IAI47_02300 0.46 -2.1 477,015 + IAI47_02300 0.46 -0.8 477,015 + IAI47_02300 0.46 -1.2 477,016 - IAI47_02300 0.46 +0.2 477,016 - IAI47_02300 0.46 +0.8 477,016 - IAI47_02300 0.46 -2.0 477,016 - IAI47_02300 0.46 +2.8 477,016 - IAI47_02300 0.46 +1.0 477,040 + IAI47_02300 0.51 -1.8 477,040 + IAI47_02300 0.51 -1.0 477,040 + IAI47_02300 0.51 -0.9 477,041 - IAI47_02300 0.51 -0.8 477,050 + IAI47_02300 0.53 +0.5 477,050 + IAI47_02300 0.53 +0.4 477,050 + IAI47_02300 0.53 -0.6 477,125 + IAI47_02300 0.69 -0.8 477,125 + IAI47_02300 0.69 -0.9 477,125 + IAI47_02300 0.69 +1.1 477,125 + IAI47_02300 0.69 -0.1 477,126 - IAI47_02300 0.69 -0.1 477,126 - IAI47_02300 0.69 -0.1 477,126 - IAI47_02300 0.69 -0.8 477,140 + IAI47_02300 0.72 +0.8 477,140 + IAI47_02300 0.72 -0.2 477,141 - IAI47_02300 0.72 -0.8 477,220 - IAI47_02300 0.89 -1.7 477,241 + +1.4 477,241 + +0.0 477,242 - -1.2 477,242 - -0.5 477,242 - +0.4 477,260 + +0.3 477,260 + +0.2 477,260 + -0.5 477,260 + +0.3 477,260 + -0.0 477,260 + +0.5 477,260 + +0.3 477,260 + +0.5 477,260 + +0.8 477,260 + +0.3 477,260 + -0.4 477,261 - -0.2 477,261 - +0.2 477,261 - -1.5 477,261 - -1.9 477,270 + +0.4 477,297 - -1.1 477,302 + -2.0 477,302 + -2.1 477,302 + +1.2 477,302 + -0.2 477,326 + +0.2 477,326 + -1.1 477,326 + -0.1 477,327 - -0.8 477,409 - IAI47_02305 0.20 -0.6 477,424 - IAI47_02305 0.23 -2.3 477,424 - IAI47_02305 0.23 -1.5 477,436 + IAI47_02305 0.25 -2.9 477,437 - IAI47_02305 0.26 +1.2 477,437 - IAI47_02305 0.26 -3.2 477,437 - IAI47_02305 0.26 -1.8 477,539 + IAI47_02305 0.44 +0.8 477,570 + IAI47_02305 0.50 -0.5 477,637 + IAI47_02305 0.62 -1.8 477,637 + IAI47_02305 0.62 -0.5 477,637 + IAI47_02305 0.62 +1.6 477,741 + IAI47_02305 0.81 -1.7 477,741 + IAI47_02305 0.81 +2.4 477,742 - IAI47_02305 0.81 +0.9 477,742 - IAI47_02305 0.81 +0.2 477,742 - IAI47_02305 0.81 -2.4 477,760 + IAI47_02305 0.84 -1.0 477,761 - IAI47_02305 0.85 -0.2 477,788 + IAI47_02305 0.89 -0.6 477,788 + IAI47_02305 0.89 -0.2 477,806 + +1.0 477,806 + -2.0 477,806 + +3.8 477,843 + +0.2 477,843 + +1.4 477,843 + +0.9 477,843 + +0.0 478,419 + -2.3
Or see this region's nucleotide sequence